Rv0667 - c.1290G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
19 Sensitive
34 RR-TB
33 HR-TB
35 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
73 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8.1 | 2 |
| lineage4.9 | 45 |
| lineage4.9;lineage6.1.3 | 1 |
| 6 | |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.8 | 12 |
| La1.7;lineage4.9 | 7 |
| lineage2.1;lineage4.9 | 2 |
| lineage4.1.1.1 | 1 |
| La1.7 | 2 |
| lineage4.8.2 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage5 | 1 |
| lineage3 | 4 |
| lineage2.2.1 | 17 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.2.1 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.1.1.3 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage5.2 | 2 |
| lineage4.1.1.3.1 | 2 |
| lineage3.1.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.1.2.1 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La1.7;M.canetti;lineage4.9 | 4 |
| La1;lineage4.9 | 1 |
| lineage4.4.1.1 | 3 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage3;lineage4 | 1 |
| lineage4 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage5.1.1 | 1 |
| lineage3.1.2.1 | 2 |
| lineage4.3.4.2 | 2 |
| lineage4.2.2.2 | 1 |
| lineage2.2.1.2 | 3 |
| La1.8.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage4.9;lineage7 | 5 |
| lineage2.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.2 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage6.1.1 | 2 |
| lineage1.2.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.6.1 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 197 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11342693 | MDR-TB | lineage4.8.1 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4796577 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR4818259 | RR-TB | lineage4.1.1.1 | None | ERR4830353 | Other | La1.7 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR5341330 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR4816967 | Other | lineage5 | None | ERR212123 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4819528 | RR-TB | lineage3 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4821222 | Other | lineage4.3.2.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | SRR3675441 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR29096150 | Other | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6046878 | Other | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR5485614 | RR-TB | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4820151 | Other | lineage4.8 | None | SRR3675222 | Other | La1.7 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR4798823 | HR-TB | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR4819305 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6045053 | Other | lineage4 | None | SRR6046046 | Other | lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR3675446 | RR-TB | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4797201 | Other | None | ERR751345 | Other | lineage5.1.1 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR3675280 | RR-TB | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR3468488 | Other | La1.8.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR4819546 | HR-TB | lineage3 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR6359082 | Other | lineage4.9 | None | ERR4816151 | Sensitive | lineage4.8 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR978765 | RR-TB | lineage4.8 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR2513830 | RR-TB | lineage4.8 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR176675 | Sensitive | lineage4.3.4.2.1 | None | SRR14782054 | Other | lineage4.9 | None | ERR6197043 | MDR-TB | lineage4.3.4.2 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4829816 | RR-TB | lineage4.4.1.1 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR161037 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR7535086 | Other | None | SRR18002941 | RR-TB | lineage2.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4769452 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR234659 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None |
|---|
