lineage | Count |
---|---|
lineage2.2.1 | 8 |
lineage4.4.1.1 | 3 |
lineage4.9 | 8 |
lineage4.3.3 | 2 |
lineage2.2.2 | 1 |
lineage1.2.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4 | 6 |
lineage3 | 8 |
lineage4.8 | 5 |
lineage4.3.4.2.1 | 2 |
lineage4.4.2 | 2 |
lineage1.1.3.1 | 2 |
lineage4.1.2 | 1 |
lineage2.2.1.1 | 1 |
lineage4.1 | 2 |
La1.8.2 | 1 |
lineage4.6.1.2 | 1 |
lineage4.1.2.1 | 6 |
5 | |
lineage6 | 1 |
lineage1 | 1 |
lineage4.3.2 | 1 |
lineage4.1.1 | 1 |
lineage4.1.1.3.1 | 3 |
lineage1.1.2 | 1 |
lineage4.3.4.1 | 2 |
lineage3.1.1 | 2 |
lineage4.6.2.2 | 1 |
lineage4.2.1 | 1 |
lineage4.3.1.1 | 1 |
spoligotype | Count |
---|---|
None | 81 |
ID | Drug resistance | Lineage | Country iso2 | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR1181161 | Other | lineage4.9 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR4814312 | Other | lineage4 | None | ERR4815298 | Other | lineage4.3.4.2.1 | None | ERR4815301 | Other | lineage4.4.2 | None | ERR4814763 | Other | lineage2.2.1 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4814748 | Other | lineage4.8 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4815909 | Other | lineage4.8 | None | ERR4815502 | Other | lineage4.1 | None | ERR4816133 | Other | La1.8.2 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4818785 | RR-TB | lineage4.1.2.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816756 | RR-TB | None | ERR4816866 | Other | lineage2.2.1 | None | ERR4819017 | RR-TB | lineage3 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | ERR4818274 | Other | lineage4 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | ERR2509886 | RR-TB | lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4819307 | RR-TB | lineage4 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4820265 | Other | lineage4.1.2.1 | None | ERR4819305 | RR-TB | lineage4.9 | None | ERR2513681 | Other | lineage1.1.2 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4820324 | Other | lineage4 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4819765 | Other | lineage4.1 | None | ERR4819784 | Other | lineage4.1.2.1 | None | ERR4820151 | RR-TB | lineage4.8 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR4820107 | RR-TB | None | ERR1023509 | Other | None | ERR4820833 | HR-TB | None | ERR4821214 | RR-TB | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | ERR4821769 | Other | lineage4.1.2.1 | None | SRR6045664 | Other | lineage4.2.1 | None | ERR4821530 | HR-TB | lineage4.3.4.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR6044936 | Other | lineage4 | None | SRR6045909 | Other | lineage4.8 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6045957 | Other | lineage4.9 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6046815 | Other | lineage3 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None |
---|