Rv0668 - c.114G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
17 Sensitive
32 RR-TB
12 HR-TB
23 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
53 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.1 | 2 |
| lineage4.4.1.1.1 | 2 |
| lineage2.2.1 | 13 |
| lineage4.1.1.3 | 2 |
| lineage4.8.1 | 2 |
| La1.4 | 1 |
| lineage4.3.4.2.1 | 6 |
| lineage1.2.1.2 | 1 |
| lineage4.2.1 | 1 |
| lineage4.8 | 9 |
| lineage2.2.1.1 | 1 |
| lineage4.9 | 37 |
| lineage4.1.2 | 2 |
| lineage4.3.2.1 | 4 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage3.1.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.6.1.2 | 5 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.7 | 2 |
| lineage3 | 6 |
| lineage2.2;lineage4.9 | 1 |
| La1.7;lineage4.9 | 5 |
| lineage4.1.2.1 | 3 |
| lineage4.7 | 1 |
| lineage4.1.1.2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.2.2.2 | 1 |
| La1.7.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage3;lineage4 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage2;lineage4 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage3.1.2.1 | 1 |
| La1.3 | 1 |
| lineage4.5 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.4.2 | 2 |
| lineage4.8.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage2.2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage4.3.4.1 | 1 |
| La1.2 | 1 |
| La1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 144 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR16278274 | Other | La1.4 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR4821747 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR1173310 | Other | lineage3.1.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR3675222 | Other | La1.7 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424765 | HR-TB | lineage4.8 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR1049672 | Other | lineage3 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR6197035 | Sensitive | lineage4.7 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR1173281 | Other | lineage3 | None | SRR1140724 | Other | lineage2.2.1 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR11465830 | Sensitive | lineage4.9 | None | SRR1140716 | Other | lineage3 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR1180440 | Other | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR11465833 | Sensitive | lineage4.3.2.1 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4818904 | Other | lineage4.8 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR3675389 | Other | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342682 | Other | lineage4.1.2 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR11465627 | Sensitive | lineage4.3.4.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4821143 | Other | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046492 | Other | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | ERR4769418 | Other | La1.2 | None | SRR16157123 | Other | lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None |
|---|
