Rv0668 - c.-318G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
17 Sensitive
4 RR-TB
22 HR-TB
5 MDR-TB
5 Pre-XDR-TB
1 XDR-TB
26 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 3 |
| lineage4.9 | 18 |
| lineage2.2.1 | 13 |
| La3;lineage4.9 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.1.1.3 | 3 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage3.1.2.1 | 1 |
| lineage4.8 | 1 |
| lineage3 | 4 |
| lineage2.2.2 | 1 |
| lineage4.7 | 3 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.1.1.1 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.3.2.1 | 2 |
| lineage1.2.2.2 | 1 |
| La1.7.1 | 2 |
| La1.8.1 | 1 |
| lineage4.6.1.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage3.1.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.6;La3;lineage4.9 | 2 |
| lineage1.1.1 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 80 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12708419 | Other | lineage4.3.3 | None | SRR7069391 | Other | lineage4.9 | None | ERR4821747 | Sensitive | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR2432997 | Other | lineage4.8 | None | ERR4596902 | MDR-TB | lineage3 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR6197033 | Sensitive | lineage4.7 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4821276 | Sensitive | lineage3 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR3283032 | Other | lineage4.9 | None | ERR6197031 | Sensitive | lineage4.7 | None | ERR4818831 | Other | lineage3 | None | ERR4819546 | HR-TB | lineage3 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR1184329 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6046737 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR7236330 | Other | La1.8.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR5341373 | Other | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None |
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