Rv0668 - c.291T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
110 Sensitive
33 RR-TB
10 HR-TB
38 MDR-TB
15 Pre-XDR-TB
1 XDR-TB
69 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3;lineage4.8 | 4 |
| lineage4 | 1 |
| La1.6 | 1 |
| La3;M.canetti | 9 |
| lineage2.2.1 | 31 |
| La1.8.1 | 1 |
| lineage4.9 | 66 |
| La1.7.1 | 2 |
| lineage2.2.1;lineage4 | 2 |
| lineage3 | 13 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.1.2.1;lineage4.9 | 1 |
| M.canetti | 72 |
| lineage2.2.1;lineage4.9 | 3 |
| lineage4.1.1.3.1 | 2 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.8.1 | 3 |
| La2;M.canetti | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage2.2.2 | 1 |
| lineage4.8 | 5 |
| lineage4.3.3 | 4 |
| lineage4.7 | 2 |
| lineage4.2.1 | 3 |
| lineage4.1.1.2 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.2.1 | 6 |
| La1.3 | 1 |
| lineage2.2.1.1 | 2 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.4 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.3.4.2.1 | 6 |
| lineage4.3.4.1 | 2 |
| lineage4.4.1.1.1 | 3 |
| M.canetti;lineage4.9 | 2 |
| 2 | |
| lineage4.1.1.1 | 1 |
| lineage1.1.1.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.8.2 | 1 |
| La2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 276 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1181349 | Sensitive | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | ERR1336820 | Sensitive | La3;M.canetti | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR1792011 | Other | La1.8.1 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR21469202 | Other | La1.7.1 | None | SRR15315797 | RR-TB | lineage2.2.1;lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR28170812 | Sensitive | M.canetti | None | SRR5818605 | Other | M.canetti | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SAMEA2533665 | Sensitive | M.canetti | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4821747 | Sensitive | lineage4.9 | None | SRR5818668 | Sensitive | M.canetti | dj | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR1175474 | Other | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | ERR266121 | Sensitive | M.canetti | None | SRR18665458 | MDR-TB | lineage4.1.1.3 | None | ERR4817915 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR266126 | Sensitive | La2;M.canetti | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR3597004 | Sensitive | M.canetti | None | ERR3597007 | Sensitive | M.canetti | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4817181 | Sensitive | M.canetti | None | ERR4819927 | Sensitive | M.canetti | None | ERR4821046 | Sensitive | M.canetti | None | ERR551182 | Sensitive | M.canetti | None | ERR551057 | Sensitive | M.canetti | None | ERR551179 | Sensitive | M.canetti | None | ERR552307 | Sensitive | M.canetti | None | ERR552304 | Sensitive | M.canetti | None | SRR10522783 | Sensitive | M.canetti | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR4769508 | RR-TB | lineage4.9 | None | DRR184629 | Other | lineage2.2.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | ERR867567 | RR-TB | lineage3 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR8975044 | Other | lineage4.1.1.2 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR3324368 | RR-TB | lineage1.1.2 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4769436 | Other | La1.3 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR16157123 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR21469201 | Other | La1.7.1 | None | ERR266109 | Sensitive | M.canetti | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SRR6046376 | Other | lineage3 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR1023509 | Other | lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | SRR10177263 | Sensitive | M.canetti | None | SRR5818661 | Other | M.canetti | dj | SRR9971168 | Other | lineage4.3.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR5818676 | Other | M.canetti | dj | SRR1180399 | Sensitive | lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | SRR24061598 | Sensitive | M.canetti | None | SRR10177260 | Other | M.canetti | None | SRR1173185 | Other | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | ERR1336826 | Sensitive | La3;M.canetti | None | SRR6046485 | Other | lineage4.9 | None | ERR551180 | Sensitive | M.canetti | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | SAMEA6086630 | Sensitive | M.canetti | None | SAMEA2534556 | Sensitive | M.canetti | None | SAMEA2533757 | Sensitive | M.canetti | None | SRR10177262 | Sensitive | M.canetti | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR3597003 | Sensitive | M.canetti | None | SRR1181256 | Other | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR24061599 | Sensitive | M.canetti | None | SRR24061600 | Sensitive | M.canetti | None | ERR3597005 | Sensitive | M.canetti | None | SRR7645928 | Other | lineage4.7 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1180440 | Other | lineage4.9 | None | ERR4821143 | Other | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR266107 | Other | M.canetti | None | SRR10522763 | Sensitive | M.canetti | None | ERR551055 | Sensitive | M.canetti | None | ERR9125480 | Sensitive | M.canetti | None | ERR1336822 | Sensitive | M.canetti | None | SRR5818614 | Sensitive | M.canetti | dj | ERR313115 | Sensitive | M.canetti | None | ERR313116 | Sensitive | M.canetti | None | ERR313114 | Sensitive | M.canetti | None | ERR266124 | Other | M.canetti | None | ERR4815361 | Other | M.canetti | None | ERR313113 | Sensitive | M.canetti | None | ERR3597001 | Sensitive | M.canetti | None | ERR3597002 | Sensitive | M.canetti | None | ERR3597006 | Sensitive | M.canetti | None | SRR10177261 | Sensitive | M.canetti | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR22179528 | Sensitive | M.canetti | None | SRR16058668 | Sensitive | M.canetti | None | SRR16058674 | Sensitive | M.canetti | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR266110 | Other | M.canetti | None | SRR29056248 | Sensitive | M.canetti | None | SRR5818685 | Sensitive | M.canetti | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR6358991 | HR-TB | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR4821276 | Sensitive | lineage3 | None | ERR4820030 | Other | lineage4.9 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR266120 | Sensitive | M.canetti | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | SRR5818652 | Sensitive | M.canetti | dj | SRR5818653 | Sensitive | M.canetti | dj | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR551181 | Sensitive | M.canetti | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | ERR4816019 | Sensitive | M.canetti | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR10177258 | Other | M.canetti | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR1180446 | Other | lineage4.9 | None | ERR552305 | Sensitive | M.canetti | None | SRR9971113 | Other | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175473 | Other | lineage4.9 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR1336821 | Sensitive | La3;M.canetti | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR552306 | Sensitive | M.canetti;lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR1043164 | Other | La3;M.canetti | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | ERR1043163 | Other | La3;M.canetti | None | ERR4817069 | RR-TB | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173770 | Other | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR1173281 | Other | lineage3 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR266122 | Sensitive | La3;M.canetti | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1140716 | Other | lineage3 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1173170 | Other | lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | ERR266123 | Sensitive | M.canetti | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR5818567 | Other | M.canetti | dj | SRR6046839 | Other | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR3283033 | Sensitive | lineage4.9 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR9125475 | Sensitive | M.canetti | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR313117 | Sensitive | M.canetti | None | ERR266125 | Other | M.canetti | None | ERR7451301 | Sensitive | M.canetti | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR551056 | Sensitive | M.canetti | None | ERR266108 | Sensitive | M.canetti | None | SRR1049672 | Other | lineage3 | None | SRR6650709 | Sensitive | M.canetti | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR10177259 | Other | M.canetti | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR266106 | Sensitive | M.canetti | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR18289196 | Sensitive | M.canetti | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR1183054 | Sensitive | lineage4.9 | None |
|---|
