| lineage | Count |
|---|---|
| lineage4.8 | 8 |
| lineage4.9 | 26 |
| lineage2.2.1 | 17 |
| lineage4.7 | 2 |
| lineage3 | 7 |
| lineage4.1.2.1 | 4 |
| lineage1.1.3.1 | 1 |
| lineage4.4.1.1 | 3 |
| lineage2.2.2 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.1.1.3 | 2 |
| lineage4.8.1 | 2 |
| lineage3.1.1 | 2 |
| lineage1.2.1.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.3.4.2.1 | 6 |
| lineage2.2;lineage4 | 1 |
| lineage1.1.2 | 1 |
| La1.2 | 1 |
| lineage4.3.3 | 5 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.1.2 | 1 |
| La1.8.1 | 1 |
| La1.7.1 | 1 |
| lineage4.2.1 | 3 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.3.4.1 | 2 |
| lineage2.2;lineage4.9 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.4.2 | 1 |
| La1.4 | 1 |
| La1.6 | 1 |
| lineage4.4 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.3.3;lineage4.8 | 2 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| spoligotype | Count |
|---|---|
| None | 122 |
| ID | Drug resistance | Lineage | Country iso2 | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR867567 | RR-TB | lineage3 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR1173281 | Other | lineage3 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1140716 | Other | lineage3 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR3324368 | RR-TB | lineage1.1.2 | None | ERR4769418 | Other | La1.2 | None | ERR4816610 | Other | lineage4.3.3 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR4820030 | Other | lineage4.9 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR1792011 | Other | La1.8.1 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR21469201 | Other | La1.7.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR6046737 | Other | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173770 | Other | lineage4.9 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR4821747 | Sensitive | lineage4.9 | None | SRR1173170 | Other | lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1173719 | Other | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | ERR2229234 | Sensitive | lineage4.8 | None | SRR1049672 | Other | lineage3 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | DRR184629 | Other | lineage2.2.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR4818904 | Other | lineage4.8 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR6197035 | Sensitive | lineage4.7 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR16278274 | Other | La1.4 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR4769493 | Other | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR1175474 | Other | lineage4.9 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR4815079 | RR-TB | lineage3 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None |
|---|