lineage | Count |
---|---|
La1.6 | 1 |
lineage2.2.1 | 17 |
lineage4.8 | 8 |
lineage4.3.3 | 6 |
lineage4.9 | 26 |
lineage4.3.4.2.1 | 6 |
lineage4.2.2.2 | 1 |
lineage2.2;lineage4.9 | 1 |
lineage3 | 7 |
lineage1.2.1.2 | 1 |
lineage4.1.2.1 | 4 |
lineage4.1.1.3.1 | 1 |
lineage4.1.1.3 | 2 |
lineage4.3.2.1 | 1 |
La1.8.1 | 1 |
lineage3.1.1 | 2 |
lineage4.2.1 | 3 |
lineage4.3.3;lineage4.8 | 2 |
lineage4.8.1 | 2 |
lineage4.3.4.1 | 2 |
lineage4.4.2 | 1 |
lineage4.4.1.1 | 3 |
lineage2.2.1.1 | 1 |
lineage4.1.2 | 1 |
lineage4.4 | 1 |
lineage4.8.2;lineage4.9 | 1 |
lineage4.4.1.1.1 | 2 |
lineage3;lineage4 | 1 |
lineage1.1.1.1 | 1 |
lineage4.1.2.1;lineage4.9 | 1 |
lineage1.1.3.1 | 1 |
lineage1.1.2;lineage6.2.3 | 1 |
lineage2.2.2 | 1 |
La1.2 | 1 |
lineage4.1.1.3.1;lineage4.9 | 1 |
lineage4.1.1.1 | 2 |
lineage2.2;lineage4 | 1 |
lineage4.7 | 2 |
La1.7.1 | 1 |
La1.4 | 1 |
lineage4.1.2.1;lineage4.4.1.1 | 1 |
lineage4.1.2.1;lineage4.4.1 | 1 |
lineage2.2.1;lineage4.9 | 1 |
spoligotype | Count |
---|---|
None | 122 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SRR10993951 | RR-TB | La1.6 | None |
ERR4822261 | RR-TB | lineage2.2.1 | None |
ERR978765 | RR-TB | lineage4.8 | None |
SRR11342649 | MDR-TB | lineage4.3.3 | None |
SRR1735596 | RR-TB | lineage4.9 | None |
SRR1140753 | RR-TB | lineage4.3.4.2.1 | None |
SAMEA3501073 | RR-TB | lineage4.8 | None |
SRR11342687 | RR-TB | lineage4.2.2.2 | None |
SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4815550 | Other | lineage2.2;lineage4.9 | None |
ERR867567 | RR-TB | lineage3 | None |
SRR5818647 | Other | lineage4.3.4.2.1 | None |
SRR11342653 | MDR-TB | lineage2.2.1 | None |
ERR4818583 | Other | lineage4.3.3 | None |
ERR4820030 | Other | lineage4.9 | None |
DRR184629 | Other | lineage2.2.1 | None |
SRR20969475 | Other | lineage1.2.1.2 | None |
ERR4821272 | RR-TB | lineage4.1.2.1 | None |
SRR5007193 | RR-TB | lineage4.1.1.3.1 | None |
ERR3797062 | RR-TB | lineage4.9 | None |
SRR16156697 | RR-TB | lineage2.2.1 | None |
SRR11342647 | MDR-TB | lineage4.1.1.3 | None |
SRR1062871 | RR-TB | lineage4.3.4.2.1 | None |
SRR6046737 | Other | lineage4.9 | None |
ERR3283006 | RR-TB | lineage4.9 | None |
ERR1034647 | MDR-TB | lineage4.1.1.3 | None |
SRR9971168 | Other | lineage4.3.2.1 | None |
SRR1792011 | Other | La1.8.1 | None |
SRR11342655 | MDR-TB | lineage2.2.1 | None |
SRR1735598 | RR-TB | lineage4.9 | None |
SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None |
ERR4816729 | Sensitive | lineage4.9 | None |
ERR4821747 | Sensitive | lineage4.9 | None |
SRR1140724 | Other | lineage2.2.1 | None |
SRR1173310 | Other | lineage3.1.1 | None |
SRR1175474 | Other | lineage4.9 | None |
ERR4818904 | Other | lineage4.8 | None |
ERR10762275 | MDR-TB | lineage4.2.1 | None |
SRR1049674 | HR-TB | lineage2.2.1 | None |
SRR1140716 | Other | lineage3 | None |
SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None |
SRR1173170 | Other | lineage4.9 | None |
SRR11342662 | MDR-TB | lineage4.8.1 | None |
SRR1175472 | RR-TB | lineage4.3.4.1 | None |
SRR14782539 | MDR-TB | lineage4.2.1 | None |
SRR1049673 | Pre-XDR-TB | lineage3 | None |
SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None |
ERR502474 | RR-TB | lineage4.9 | None |
SRR1062919 | HR-TB | lineage2.2.1 | None |
SRR1173719 | Other | lineage4.9 | None |
SRR15316595 | RR-TB | lineage4.4.2 | None |
SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4821119 | Other | lineage4.4.1.1 | None |
SRR18909918 | Other | lineage2.2.1.1 | None |
SRR11342682 | Other | lineage4.1.2 | None |
SRR16627752 | RR-TB | lineage4.4 | None |
ERR4769433 | RR-TB | lineage4.9 | None |
SRR11342660 | MDR-TB | lineage2.2.1 | None |
ERR4821704 | Other | lineage4.3.3 | None |
ERR502479 | RR-TB | lineage4.9 | None |
ERR502473 | RR-TB | lineage4.9 | None |
ERR502478 | RR-TB | lineage4.9 | None |
SRR11342636 | MDR-TB | lineage4.3.3 | None |
ERR867523 | Pre-XDR-TB | lineage2.2.1 | None |
SRR18003047 | MDR-TB | lineage2.2.1 | None |
SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None |
SRR5007168 | Other | lineage4.8.2;lineage4.9 | None |
SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None |
SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1173740 | Other | lineage3;lineage4 | None |
ERR752012 | HR-TB | lineage1.1.1.1 | None |
SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None |
ERR4819383 | RR-TB | lineage4.9 | None |
ERR502470 | RR-TB | lineage4.9 | None |
ERR4819864 | RR-TB | lineage1.1.3.1 | None |
SRR1062918 | Other | lineage3 | None |
ERR4819863 | RR-TB | lineage4.9 | None |
ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None |
SRR11342664 | MDR-TB | lineage2.2.2 | None |
ERR4769418 | Other | La1.2 | None |
SRR1175491 | MDR-TB | lineage4.3.4.1 | None |
SRR1140736 | Other | lineage4.1.2.1 | None |
ERR4817915 | Other | lineage4.9 | None |
SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None |
ERR4815079 | RR-TB | lineage3 | None |
ERR4816610 | Other | lineage4.3.3 | None |
SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None |
ERR502481 | RR-TB | lineage4.9 | None |
ERR4821172 | RR-TB | lineage4.9 | None |
SRR11342642 | MDR-TB | lineage4.1.1.1 | None |
ERR2027257 | Other | lineage4.1.2.1 | None |
ERR2229234 | Sensitive | lineage4.8 | None |
SRR16156832 | RR-TB | lineage2.2;lineage4 | None |
SRR1049672 | Other | lineage3 | None |
ERR987707 | MDR-TB | lineage4.7 | None |
SRR11342651 | MDR-TB | lineage4.1.1.1 | None |
ERR6197035 | Sensitive | lineage4.7 | None |
SRR21469201 | Other | La1.7.1 | None |
ERR867541 | MDR-TB | lineage4.2.1 | None |
ERR978767 | RR-TB | lineage4.8 | None |
SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4813263 | MDR-TB | lineage4.8 | None |
ERR4769493 | Other | lineage4.9 | None |
ERR978766 | RR-TB | lineage4.8 | None |
ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None |
SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None |
ERR4820075 | Other | lineage4.1.2.1 | None |
SRR1175473 | Other | lineage4.9 | None |
SRR16278274 | Other | La1.4 | None |
ERR9992879 | XDR-TB | lineage4.3.3 | None |
SRR1173770 | Other | lineage4.9 | None |
ERR4818851 | RR-TB | lineage4.4.1.1 | None |
SRR1173281 | Other | lineage3 | None |
SRR12634609 | MDR-TB | lineage3.1.1 | None |
SRR17567917 | RR-TB | lineage4.4.1.1 | None |
SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None |
SRR11342693 | MDR-TB | lineage4.8.1 | None |
ERR867570 | RR-TB | lineage4.9 | None |
SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None |
ERR4815310 | Other | lineage2.2.1;lineage4.9 | None |
SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None |
SRR1049675 | HR-TB | lineage2.2.1 | None |