lineage | Count |
---|---|
lineage4.9 | 42 |
35 | |
lineage4 | 52 |
lineage1.1.2 | 2 |
lineage4.3.4.2.1 | 1 |
lineage4.1.2.1 | 5 |
lineage3.1.2.1 | 1 |
lineage4.8 | 2 |
lineage3 | 5 |
lineage2.2.1 | 11 |
lineage4.2.1 | 2 |
lineage5.1.4 | 1 |
La2 | 1 |
lineage4.4.1.1;lineage1.2.2.1 | 1 |
lineage4.4.2 | 1 |
lineage6.1.1 | 2 |
lineage5.1.2 | 1 |
La1 | 1 |
lineage2.2 | 4 |
lineage3.1.2 | 1 |
lineage4.5 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2.2.1.2 | 2 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.1 | 1 |
lineage4.3.4 | 1 |
spoligotype | Count |
---|---|
None | 178 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675501 | HR-TB | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR3675279 | Other | None | ERR4814874 | MDR-TB | lineage1.1.2 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | SRR3675318 | Other | lineage4.9 | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675387 | Sensitive | None | ERR176740 | HR-TB | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | SRR3675522 | Other | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212123 | Other | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4817131 | Pre-XDR-TB | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR2229507 | Sensitive | lineage4.8 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4817998 | Other | lineage3 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818285 | HR-TB | lineage4.1.2.1 | None | ERR2513283 | Other | lineage5.1.4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | SRR5341470 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045519 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR2693227 | Other | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4830353 | Other | None | SRR6045957 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6046245 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045399 | Other | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046644 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046482 | HR-TB | None | ERR4831638 | Sensitive | None | ERR502524 | HR-TB | La2 | None | SRR6982365 | Other | lineage2.2.1 | None | ERR323039 | HR-TB | None | ERR502943 | HR-TB | None | SRR8217918 | HR-TB | None | SRR9971114 | Other | lineage2.2.1 | None | ERR323053 | HR-TB | None | ERR11465714 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | DRR188519 | Other | lineage4.4.2 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR373947 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797313 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4798504 | Other | lineage3 | None | ERR4798262 | HR-TB | La1 | None | ERR4798431 | HR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811030 | Sensitive | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4812155 | Sensitive | None | ERR6865502 | Sensitive | lineage4 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | ERR987722 | HR-TB | None | ERR9787014 | Other | lineage6.1.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172310 | HR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1174897 | HR-TB | None | SRR20969731 | Other | lineage2.2.1 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR14782405 | HR-TB | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR3675477 | Other | lineage4.9 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675455 | Sensitive | lineage4 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675488 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | SRR3675222 | Other | None | SRR3675229 | Other | lineage4 | None |
---|