Rv3596c - c.648C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
120 Sensitive
12 RR-TB
33 HR-TB
17 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
55 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 138 |
| La3;lineage4.9 | 8 |
| lineage4.1.1.1 | 3 |
| lineage2.2.1 | 8 |
| lineage4 | 6 |
| lineage4.1.1.2 | 1 |
| lineage4.2.1 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4.4.2 | 1 |
| La1.8.1 | 1 |
| lineage2.2.1.2 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.2 | 1 |
| lineage3;lineage4 | 1 |
| lineage2.2 | 1 |
| lineage2;lineage4 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.1.1.3 | 3 |
| lineage1.2.2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.3.4.1 | 2 |
| lineage2.2.1;lineage4 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage4.3.4.2.1 | 5 |
| lineage4.8 | 5 |
| La1;lineage2;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.2.1 | 6 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.3.3 | 3 |
| lineage4.4.1.1.1 | 2 |
| lineage4.1 | 1 |
| lineage4.3.4.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage4.9;lineage7 | 2 |
| lineage3 | 2 |
| lineage4.1;lineage4.9 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.5 | 1 |
| La1;lineage4.9 | 2 |
| lineage3.1.2 | 1 |
| lineage4.9.1 | 1 |
| 1 | |
| lineage2.2;lineage4 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La3;lineage4 | 1 |
| lineage4.4.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 241 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045219 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR15316488 | Sensitive | lineage2.2.1 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR6045371 | Other | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR751326 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR5431730 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR363502 | Other | lineage4.9 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR4821143 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR11465497 | Sensitive | lineage4.3.2.1 | None | ERR11466070 | Sensitive | lineage4.3.4.1 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR24466794 | MDR-TB | lineage4.8 | None | ERR3273109 | HR-TB | lineage4 | None | SRR6046802 | Other | lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR3725688 | Sensitive | lineage4.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR11465347 | Sensitive | lineage4.3.4.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR11465900 | Sensitive | lineage4.3.4.2.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | SRR1173281 | Other | lineage3 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR11464985 | Sensitive | lineage4.3.4.2.1 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1173515 | Sensitive | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR13266892 | MDR-TB | lineage3.1.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | ERR4817998 | Other | lineage3 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR11465201 | Sensitive | lineage4.3.4.1 | None | ERR373947 | Other | lineage4.9 | None | SRR29097054 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR11466062 | Sensitive | lineage4.9.1 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR212001 | HR-TB | None | ERR349264 | Sensitive | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR3283028 | Other | La3;lineage4 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR12420603 | Sensitive | lineage2.2.1 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR2229234 | Sensitive | lineage4.8 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR11465670 | Sensitive | lineage4.4.1.1 | None | ERR176675 | Sensitive | lineage4.3.4.2.1 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR502479 | RR-TB | lineage4.9 | None |
|---|
