Rv3596c - c.648C>T
Drug resistance types
131 Sensitive
20 RR-TB
65 HR-TB
17 MDR-TB
13 Pre-XDR-TB
0 XDR-TB
59 Other
lineage Counts
| lineage | Count |
|---|---|
| 43 | |
| lineage4.6.1.1 | 2 |
| lineage2.2.1 | 17 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4 | 70 |
| lineage4.9 | 79 |
| lineage4.4.1.1.1 | 2 |
| lineage4.3.3 | 3 |
| lineage4.9;lineage4.2.1 | 2 |
| lineage3 | 5 |
| lineage2 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 4 |
| lineage2.2.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage1.1.2 | 3 |
| lineage2.2.1.1 | 1 |
| lineage3.1 | 2 |
| lineage4.4.2 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4.8 | 26 |
| La1.7.1 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.1.1.3 | 5 |
| lineage4.3.4.2.1 | 2 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage2.1 | 1 |
| lineage4.1 | 1 |
| lineage4.1.1 | 2 |
| lineage4;lineage2 | 1 |
| lineage4.1.2.1 | 6 |
| lineage4.1.1.2 | 1 |
| lineage1.1.1.1 | 1 |
| La1.8.1 | 2 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.2.1 | 2 |
| lineage4.3.2 | 1 |
| lineage4.9;lineage2 | 1 |
| lineage4.1.2 | 1 |
| La1 | 1 |
| lineage5.1.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage1.2.1.2.1 | 2 |
| lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 305 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR10808805 | Sensitive | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | SRR1166181 | MDR-TB | lineage4 | None | SRR1168955 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1173740 | Other | None | SRR1175513 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181368 | Other | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR11972171 | RR-TB | lineage2.2.2 | None | SRR11972166 | Sensitive | lineage1.1.3.1 | None | SRR11972169 | HR-TB | lineage2.2 | None | SRR11972332 | HR-TB | lineage2.2.1 | None | SRR11972222 | Sensitive | lineage1.1.2 | None | SRR11972328 | MDR-TB | lineage2.2.1.1 | None | SRR11972458 | Sensitive | lineage1.1.2 | None | SRR11972344 | Sensitive | lineage2.2.1 | None | SRR11972462 | Sensitive | lineage2.2.1 | None | SRR15316488 | Sensitive | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR14088361 | MDR-TB | lineage3.1 | None | SRR14782405 | HR-TB | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR8692812 | Other | lineage4.9 | None | SRR18572454 | RR-TB | lineage4.9 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18391668 | Other | La1.7.1 | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692905 | HR-TB | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692887 | Other | None | SRR8692791 | Other | lineage4.9 | None | SRR8692899 | Other | lineage4.9 | None | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | SRR3085281 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815627 | Other | lineage4.1.1.3 | gb | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR1750929 | Sensitive | lineage4.1.1.3 | za | ERR4815502 | Other | lineage4.1 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675270 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | ERR4815550 | Other | lineage4 | None | ERR176675 | Sensitive | lineage4.3.4.2.1 | None | ERR176740 | HR-TB | None | ERR2229741 | Sensitive | lineage4.8 | None | ERR1950022 | Sensitive | lineage4.8 | None | ERR4815909 | Other | lineage4.8 | None | ERR4816964 | Other | lineage4.9 | None | ERR2229076 | Other | lineage4 | None | ERR2229054 | Sensitive | lineage4.8 | None | ERR2229563 | Sensitive | lineage4.8 | None | ERR1950025 | Sensitive | lineage4.8 | dk | SRR3675538 | Other | lineage4.8 | None | ERR2229091 | Sensitive | lineage4.8 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2229578 | Sensitive | lineage4 | None | ERR2229574 | Sensitive | lineage4.8 | None | ERR212001 | HR-TB | None | ERR2229171 | Sensitive | lineage4 | None | ERR2229169 | HR-TB | lineage4.8 | None | ERR2229107 | Sensitive | lineage4 | None | ERR212034 | HR-TB | None | ERR2229138 | Other | lineage4 | None | ERR2229762 | HR-TB | lineage4.8 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR2229234 | RR-TB | lineage4.8 | None | ERR2229228 | HR-TB | lineage4.8 | None | ERR2229608 | HR-TB | lineage4.8 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR2229314 | Sensitive | lineage4.8 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR2229340 | Sensitive | lineage4.8 | None | ERR2229690 | Other | lineage4.8 | None | ERR4816729 | Sensitive | lineage4.9 | None | ERR2229403 | Sensitive | lineage4.8 | None | ERR2229408 | Sensitive | lineage4.8 | dk | ERR2245275 | Sensitive | lineage4.9 | None | ERR2229421 | Sensitive | lineage4.8 | dk | ERR2229462 | Other | lineage4.8 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4816847 | Sensitive | lineage4.1.1 | gb | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR2229521 | Sensitive | lineage4.8 | None | ERR2510682 | Pre-XDR-TB | lineage2.2.1 | it | ERR4817998 | Other | lineage3 | None | ERR2513109 | Sensitive | lineage3 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR2229726 | Sensitive | lineage4.8 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818186 | Other | lineage4 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | ERR4818536 | Other | lineage4.9 | None | ERR4819357 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR1023509 | Other | None | ERR4819607 | Other | lineage3 | None | ERR4819462 | Other | lineage4 | None | ERR2514197 | RR-TB | lineage1.1.1.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR5341330 | HR-TB | None | ERR4819933 | Other | lineage4.9 | None | SRR5431730 | Other | La1.8.1 | None | SRR5341456 | Other | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045503 | HR-TB | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR5535715 | HR-TB | lineage2.2.1 | None | ERR2660539 | Other | lineage4.9 | None | ERR4821620 | Sensitive | lineage4.1.1.3 | None | SRR6046133 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6046046 | Other | None | SRR6045053 | Other | None | SRR6045233 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046492 | Other | None | SRR6046299 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046594 | HR-TB | lineage4 | None | ERR4831117 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6280272 | Sensitive | lineage2.2.1 | cn | ERR502470 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4972584 | MDR-TB | lineage4.3.2 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR501639 | Sensitive | lineage4.9;lineage2 | None | SRR7535082 | Sensitive | lineage4 | None | ERR502510 | Sensitive | lineage4 | None | SRR6785157 | Sensitive | lineage4.2.1 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR3283010 | Other | La1 | None | ERR067699 | HR-TB | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR133825 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR108471 | HR-TB | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283028 | Other | None | ERR3283031 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3439265 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445504 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR3797046 | HR-TB | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR3797064 | Sensitive | None | ERR3797081 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4798898 | MDR-TB | lineage3.1.2.1 | None | ERR4797474 | Other | None | ERR4798431 | HR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR6336807 | HR-TB | lineage1.2.1.2.1 | None | ERR6336712 | Sensitive | lineage1.2.1.2.1 | None | ERR6336765 | HR-TB | None | ERR6336744 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359069 | Other | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR752229 | Other | lineage4.5 | None | ERR736837 | Other | lineage4.9 | None | ERR751326 | Sensitive | lineage4 | None | ERR9119669 | HR-TB | None |
|---|
