Rv3596c - c.1119G>C
Drug resistance types
105 Sensitive
9 RR-TB
103 HR-TB
13 MDR-TB
7 Pre-XDR-TB
0 XDR-TB
94 Other
lineage Counts
| lineage | Count |
|---|---|
| 80 | |
| lineage4.9 | 88 |
| lineage4 | 63 |
| lineage4.1.2.1 | 19 |
| lineage2.2.1 | 19 |
| lineage1.1 | 1 |
| lineage4.3.3 | 4 |
| lineage3.1 | 2 |
| lineage4.7 | 2 |
| lineage4.3.2.1 | 2 |
| lineage4.3.4.2.1 | 3 |
| La1 | 1 |
| La1.8.1 | 4 |
| lineage5.1.2 | 1 |
| lineage3 | 5 |
| La1.3 | 5 |
| lineage4.9;La1.3 | 3 |
| lineage4.5 | 2 |
| lineage4.3.4.1 | 1 |
| La1.2 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage3.1.1 | 1 |
| lineage2.2.2 | 2 |
| lineage6 | 1 |
| lineage2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage4.4.2 | 1 |
| lineage4.1 | 2 |
| lineage3;lineage2.1 | 1 |
| lineage4.3.4 | 1 |
| lineage4.8 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.2.1 | 2 |
| lineage1.1.1 | 1 |
| lineage5.1.4 | 1 |
| lineage4;lineage1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 331 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6325448 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | ERR323036 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4831638 | Sensitive | None | ERR323037 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831719 | MDR-TB | lineage2.2.1 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR294248 | HR-TB | None | SRR6982196 | Sensitive | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR502943 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502889 | Other | None | ERR5311081 | HR-TB | None | SRR7496471 | Sensitive | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR133986 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323038 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323063 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063855 | Other | lineage4 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR067681 | HR-TB | None | ERR1034652 | Other | None | ERR3283017 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283014 | HR-TB | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283028 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283032 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3439432 | Other | None | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR349264 | Sensitive | lineage4 | None | ERR3468544 | HR-TB | None | ERR349298 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349299 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797019 | Other | La1.8.1 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797063 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR4188350 | HR-TB | None | ERR400320 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR403298 | HR-TB | lineage4 | None | ERR4596902 | HR-TB | lineage3 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769516 | Other | La1.3 | None | ERR4769408 | Other | La1.3 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769446 | Sensitive | lineage4.9;La1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769514 | Other | La1.3 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4796577 | MDR-TB | None | ERR4797313 | HR-TB | None | ERR4798823 | HR-TB | lineage4 | None | ERR4798431 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798406 | HR-TB | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR6359070 | Other | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR4812155 | Sensitive | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6198317 | Other | La1.2 | None | ERR6358837 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR736837 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR8976043 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786428 | Sensitive | lineage4.7 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | ERR9787336 | Other | lineage6 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069989 | HR-TB | lineage2 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1062933 | Sensitive | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR13861243 | HR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR13837642 | RR-TB | lineage4.9 | None | SRR13837853 | Sensitive | lineage4.9 | None | SRR13837507 | HR-TB | lineage4.9 | None | SRR13837638 | Other | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861636 | Sensitive | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR13861666 | Sensitive | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR1791696 | Other | La1.8.1 | None | SRR8692905 | HR-TB | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR8692822 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR26399255 | Sensitive | lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR158583 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | ERR4815310 | Other | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675488 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675486 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | SRR3675222 | Other | None | ERR4815471 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR1750907 | RR-TB | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675279 | Other | None | SRR3675265 | Other | lineage4 | None | SRR3675283 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage4 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | SRR3675501 | HR-TB | None | SRR3675387 | Sensitive | None | SRR3675383 | HR-TB | None | SRR3675502 | Other | None | ERR4816964 | Other | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675537 | Sensitive | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | SRR3675558 | HR-TB | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4816470 | Other | lineage3 | None | ERR4816466 | HR-TB | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR163965 | Sensitive | lineage4.3.4.2.1 | mw | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR2513283 | Other | lineage5.1.4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341396 | Other | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341418 | Other | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341323 | Sensitive | lineage4 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR4821053 | Other | lineage3 | None | SRR6045503 | HR-TB | None | SRR6045519 | HR-TB | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2693239 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046015 | Other | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6045263 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | ERR4830353 | Other | None | ERR278594 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6046460 | HR-TB | None |
|---|
