Rv1630 - c.528G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
113 Sensitive
42 RR-TB
45 HR-TB
27 MDR-TB
14 Pre-XDR-TB
1 XDR-TB
98 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 5 |
| lineage4.1.2.1 | 4 |
| La3;lineage4.9 | 8 |
| lineage4.9 | 152 |
| lineage2.2.1 | 30 |
| lineage4.2.1 | 3 |
| lineage4.8 | 35 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.1.3 | 5 |
| La1.2.BCG;lineage4.9 | 1 |
| lineage4.2.2.2 | 2 |
| lineage2.2.2 | 5 |
| lineage4.4.1.1.1 | 3 |
| La1.8.1 | 1 |
| lineage4.2.2.1 | 1 |
| lineage3 | 11 |
| lineage4.3.3 | 2 |
| lineage2.2.1;lineage4 | 3 |
| lineage4.3.1.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage3;lineage4 | 1 |
| lineage4.3.4.1 | 3 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 5 |
| La1.7;lineage4.9 | 2 |
| lineage4.7 | 2 |
| lineage4.3.2.1 | 3 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.6.1.2 | 5 |
| lineage4.1;lineage4.9 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4.4.1.2 | 2 |
| lineage5.1.2 | 1 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.8.1 | 3 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| La1.7.1 | 1 |
| lineage4.4 | 1 |
| lineage4.1.1.3.1 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.2.BCG | 3 |
| lineage4.9.1 | 2 |
| lineage2;lineage4 | 1 |
| lineage4.3.4 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage5.1.1 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage1.2.2.2 | 1 |
| lineage3.1.1 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage3.1.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| 1 | |
| lineage1.1.2 | 1 |
| La1.3 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 340 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7496471 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR1915481 | Other | La1.2.BCG;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR6046802 | Other | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR16149129 | MDR-TB | lineage4.2.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR2229366 | Other | lineage4.8 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4814976 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | SRR15315797 | RR-TB | lineage2.2.1;lineage4 | None | SRR6046616 | Other | lineage4.3.1.1 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR6397815 | Other | lineage4.4.1.1 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR978747 | Other | lineage4.8 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR4033549 | Other | lineage2.2.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR978757 | RR-TB | lineage4.8 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR978751 | Other | lineage4.8 | None | ERR4816322 | Other | lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR926157 | Sensitive | lineage4.9 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1180250 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR3797029 | Other | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR2513259 | Other | lineage3 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR978760 | RR-TB | lineage4.8 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR926163 | Other | lineage4.9 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR21469201 | Other | La1.7.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR18003042 | Other | lineage2.2.1 | None | ERR4817998 | Other | lineage3 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR1023509 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR2228900 | Other | lineage4.8 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | ERR978735 | Other | lineage4.8 | None | ERR373947 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1915487 | Other | La1.2.BCG | None | ERR349296 | Sensitive | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR978733 | RR-TB | lineage4.8 | None | ERR978755 | RR-TB | lineage4.8 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR2228910 | Other | lineage4.8 | None | ERR978761 | Other | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR369158 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR1915479 | Other | La1.2.BCG | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR978726 | RR-TB | lineage4.8 | None | ERR978756 | Other | lineage4.8 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR212123 | Other | lineage4.9 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | ERR161037 | Other | lineage4.9 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR2228890 | Other | lineage4.8;lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR926164 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR6397733 | Other | lineage4.4.1.2 | None | SRR1180446 | Other | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | SRR28351408 | Pre-XDR-TB | lineage2.2.1;lineage4 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | ERR017781 | Other | lineage3 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR2228810 | Other | lineage4.8;lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1180440 | Other | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR369151 | Other | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR6046210 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR978752 | Other | lineage4.8 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR1049672 | Other | lineage3 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR037504 | Other | lineage4.9.1 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4769436 | Other | La1.3 | None | SRR1180148 | Sensitive | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR29050859 | Other | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR978693 | Other | lineage4.8 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None |
|---|
