Rv3457c - c.429C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
78 Sensitive
1 RR-TB
13 HR-TB
4 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 72 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.4.1.1 | 1 |
| lineage4 | 3 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.2.1 | 1 |
| lineage4.1.2.1 | 3 |
| lineage2.2.1 | 16 |
| lineage3 | 4 |
| 1 | |
| lineage4.2;lineage4.9 | 3 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.2.1.1 | 1 |
| lineage1.1.1;lineage4 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage1.1.1.1;lineage2.2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.3 | 1 |
| lineage1.1.3.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 125 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR29051439 | Sensitive | lineage2.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR4812155 | Other | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR29050811 | Sensitive | lineage2.2.1 | None | SRR12708416 | Sensitive | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR4828285 | Sensitive | lineage2.2.1 | vn | ERR369159 | Sensitive | lineage4.9 | None | ERR4828289 | Sensitive | lineage2.2.1 | None | SRR30182471 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR5073819 | Sensitive | lineage2.2.1 | vn | ERR4819357 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | SRR26399289 | Sensitive | lineage2.2.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR26399768 | Sensitive | lineage2.2.1 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR11050602 | Sensitive | lineage2.2.1 | None | SRR26399819 | Sensitive | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR11050636 | Sensitive | lineage2.2.1 | None | SRR6046065 | Sensitive | lineage3 | gb | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR4830360 | Sensitive | lineage1.1.1.1;lineage2.2.1 | vn | ERR6358979 | Other | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR22249931 | Sensitive | lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR363502 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR373947 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR13289806 | Sensitive | lineage3 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR363453 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR369158 | Other | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None |
|---|
