EBG00000313339 - n.485C>G
Drug resistance types
9 Sensitive
22 RR-TB
7 HR-TB
23 MDR-TB
15 Pre-XDR-TB
0 XDR-TB
79 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 23 |
| lineage4.1.2.1 | 7 |
| lineage2.2.1 | 43 |
| La2 | 1 |
| lineage4.2.1 | 1 |
| lineage4.8 | 7 |
| 6 | |
| lineage4.4.1.1 | 1 |
| lineage2.2.2 | 5 |
| lineage2.2 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.4.2 | 2 |
| lineage4.6.2.2 | 2 |
| lineage3 | 12 |
| lineage4.2.2 | 1 |
| lineage4.2.2.2 | 1 |
| La1.7.1 | 2 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4 | 8 |
| lineage1.2.1.1 | 1 |
| lineage4.1.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage3.1.3 | 1 |
| lineage4.7 | 1 |
| lineage4.2.1.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.6.5 | 1 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.3.3 | 1 |
| La1.3 | 7 |
| lineage4.9;La1.3 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.1.1 | 1 |
| lineage1.1.1 | 1 |
| lineage4.3.4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 155 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16156188 | HR-TB | lineage4.9 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR19303907 | Other | lineage4.8 | None | SRR16156832 | RR-TB | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002956 | HR-TB | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19303899 | Other | lineage3 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR19304104 | Other | lineage4.8 | None | SRR2100532 | Sensitive | lineage3 | None | SRR2100537 | Sensitive | lineage3 | None | SRR22048352 | Sensitive | lineage4.2.2.2 | None | SRR21469201 | Other | La1.7.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR4817069 | RR-TB | None | SRR3675230 | RR-TB | lineage3 | None | SRR3675265 | Other | lineage4 | None | SRR3675509 | Other | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675513 | Other | lineage4.8 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR228175 | Sensitive | lineage3 | None | ERR228180 | Sensitive | lineage3 | None | ERR2510804 | Other | lineage2.2.1 | None | ERR4820030 | Other | lineage4.9 | None | ERR4820503 | Other | lineage2.2.1 | None | ERR1023509 | Other | None | ERR4819935 | Sensitive | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821811 | RR-TB | lineage4.9 | None | SRR6046087 | Other | None | SRR6046089 | Other | lineage4.1.2.1 | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6045600 | Other | lineage3.1.2 | gb | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045621 | Other | lineage4.1.1.3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR6046210 | Other | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6044993 | Other | lineage3 | None | SRR6045986 | Other | lineage3 | None | SRR6045178 | Other | lineage3 | None | SRR6046359 | Other | lineage4.7 | None | SRR6397640 | Other | lineage4.2.1.1 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046482 | HR-TB | None | SRR6046497 | Other | lineage4.9 | None | SRR6046761 | Other | lineage3 | gb | SRR6046848 | Other | lineage4.6.5 | None | SRR6046907 | Other | lineage4.9 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796592 | Other | lineage4 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796627 | Other | lineage4 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796629 | Other | lineage4 | None | ERR4769436 | Other | La1.3 | None | ERR10796634 | Other | lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4769555 | Other | La1.3 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117823 | Other | lineage1.1.1 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None |
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