EBG00000313339 - n.2547C>T
Drug resistance types
30 Sensitive
44 RR-TB
17 HR-TB
23 MDR-TB
17 Pre-XDR-TB
0 XDR-TB
209 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 19 |
| lineage1.1.2 | 5 |
| lineage4.1.2.1 | 28 |
| lineage3 | 33 |
| lineage4.8 | 55 |
| lineage4.6.2.2 | 8 |
| lineage1.2.2 | 1 |
| lineage4 | 15 |
| lineage4.1.2 | 4 |
| lineage4.7 | 2 |
| lineage4.4.2 | 2 |
| lineage4.9 | 39 |
| lineage4.1.3 | 1 |
| lineage4.6.1 | 2 |
| lineage2.2.1 | 37 |
| lineage4.1 | 2 |
| 11 | |
| lineage4.6.5 | 1 |
| lineage2.2.1.1 | 3 |
| lineage5 | 3 |
| lineage1.2.1.1 | 1 |
| lineage4.6.1.2 | 2 |
| lineage3.1.1 | 4 |
| lineage4.5 | 3 |
| lineage1.1.3.1 | 3 |
| lineage4.8.2 | 2 |
| lineage4.3.4.1 | 6 |
| lineage1.1.1 | 1 |
| lineage1 | 2 |
| lineage2.2.2 | 1 |
| lineage4.1.1.3 | 3 |
| lineage3.1.2.1 | 1 |
| lineage4.4.1.1 | 9 |
| lineage4.3.2 | 3 |
| lineage4.3.4.2 | 2 |
| lineage4.1.1.3.1 | 1 |
| lineage1.2.2.2 | 2 |
| lineage3.1.2 | 1 |
| lineage4.9;lineage4.8 | 1 |
| lineage4.1.1.3.1;lineage3.1.2 | 1 |
| lineage4.4.1.2 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage4.2.1 | 1 |
| lineage4.3.1.1 | 1 |
| lineage2.1 | 1 |
| La1.8.1 | 2 |
| lineage4.1.1 | 3 |
| lineage2.2 | 1 |
| lineage4.2.2 | 1 |
| lineage4.6 | 1 |
| lineage4.3.4 | 1 |
| lineage6 | 1 |
| lineage4.5;lineage2.2.1 | 1 |
| La1.2 | 1 |
| lineage4.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 340 |
Geographic prevalence
Country level data for this variant is available for 14 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR22048536 | Other | lineage4.3.3 | None | SRR22424743 | Pre-XDR-TB | lineage1.1.2 | None | ERR4815165 | Other | lineage4.1.2.1 | None | SRR22424776 | Sensitive | lineage3 | None | ERR4815104 | Other | lineage4.8 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR4815613 | Other | lineage3 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | SRR3082067 | Sensitive | lineage4.8 | None | SRR3085326 | Sensitive | lineage4.8 | None | SRR3085299 | Pre-XDR-TB | lineage4 | None | ERR4815268 | Other | lineage4.8 | None | ERR4815655 | Other | lineage4.1.2 | None | SRR3086370 | Pre-XDR-TB | lineage4 | None | ERR4814341 | Other | lineage4.7 | None | ERR4815301 | Other | lineage4.4.2 | None | ERR2229733 | Other | lineage4.8 | dk | ERR4814362 | Other | lineage4.8 | None | ERR4815777 | Other | lineage4.9 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | ERR4814584 | Sensitive | lineage4.4.2 | None | ERR2229811 | Other | lineage4.8 | dk | ERR4815452 | Other | lineage4.3.3 | None | ERR4814623 | Other | lineage4.8 | None | ERR4815467 | Other | lineage3 | None | SAMN02567676 | MDR-TB | lineage4.6.1 | None | ERR1665404 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814714 | Other | lineage3 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4815502 | Other | lineage4.1 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR3675240 | Sensitive | None | ERR4814745 | Other | lineage4.6.5 | None | ERR4814748 | Other | lineage4.8 | None | ERR4814763 | Other | lineage2.2.1 | None | ERR2229541 | Other | lineage4.8 | None | ERR4814911 | Other | lineage4.3.3 | None | ERR4815005 | Other | lineage4.1.2.1 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4814952 | Sensitive | lineage3 | None | ERR2228965 | Other | lineage4.8 | None | ERR2229540 | Other | lineage4.8 | None | ERR4816967 | RR-TB | lineage5 | None | ERR2229810 | Other | lineage4.8 | None | ERR4815919 | Other | lineage4.8 | None | ERR4816954 | Other | lineage4.1.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4815910 | Other | lineage4.1.2.1 | None | ERR4816243 | Sensitive | lineage3 | None | ERR4816183 | Other | None | ERR4817478 | Other | lineage3 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4816232 | Other | lineage4 | None | ERR4816300 | Other | lineage4.1.2.1 | None | ERR4816270 | Other | lineage4.1.2.1 | None | ERR4817060 | RR-TB | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR4816464 | Other | lineage3 | None | ERR2229147 | Other | lineage4.8 | None | ERR4817070 | Other | lineage1.1.2 | None | ERR4816510 | Other | lineage4.1.2.1 | None | ERR2229204 | Other | lineage4.8 | None | ERR4817134 | HR-TB | lineage2.2.1 | None | ERR4817131 | Pre-XDR-TB | None | ERR4817175 | Other | lineage4.8 | None | ERR4817398 | Other | lineage3.1.1 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816549 | Other | lineage2.2.1 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR2229366 | Other | lineage4.8 | None | ERR4817189 | Other | lineage4.7 | None | ERR2229436 | Other | lineage4.8 | None | ERR4816690 | Other | None | ERR4816696 | Other | lineage3 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR2229439 | Other | lineage4.8 | None | ERR4816831 | Other | lineage4.1.2.1 | None | ERR4817435 | Other | lineage1.1.3.1 | None | ERR4816804 | Other | lineage4.1 | None | ERR4816818 | Other | lineage4.8.2 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR2228813 | Other | lineage4.8 | None | ERR2228810 | RR-TB | lineage4 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR4817452 | Other | lineage4.8 | None | ERR2229505 | Other | lineage4.8 | None | ERR2228890 | Other | lineage4 | None | ERR4817665 | Other | lineage4.8 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR2228900 | RR-TB | lineage4.8 | None | ERR2228910 | Other | lineage4.8 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | ERR4817703 | Other | lineage1.1.1 | None | ERR4818655 | Other | lineage4.3.3 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817710 | Other | lineage1.1.2 | None | ERR4818685 | Other | lineage4.6.2.2 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR4818691 | Other | lineage4.8 | None | ERR4818988 | Other | lineage1 | None | ERR4816425 | Other | lineage2.2.2 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR4817874 | Other | lineage3 | None | ERR4818752 | Other | lineage3 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR4819007 | Other | lineage2.2.1 | None | ERR4818190 | Other | lineage4.8 | None | ERR4818064 | Other | lineage4.8 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR4818173 | Other | lineage2.2.1 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR4818050 | Other | lineage4.6.2.2 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4819087 | Other | lineage4.3.3 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR2513231 | RR-TB | lineage4.3.4.2 | None | ERR4818449 | Other | lineage4.3.3 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | ERR4818536 | Other | lineage4.9 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | ERR4818548 | Other | lineage4.3.3 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR4818556 | Other | lineage3 | None | ERR4819096 | Other | lineage4.4.1.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4819192 | Other | lineage3 | None | ERR4819191 | Other | lineage4.6.2.2 | None | ERR4819133 | Other | lineage1.2.2.2 | None | ERR4819140 | Other | lineage4.1.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4820256 | Other | lineage2.2.1 | None | ERR4820720 | Other | lineage4.1.2.1 | None | ERR4819217 | Other | lineage1.2.2.2 | None | ERR4820324 | Other | lineage4 | None | ERR4819242 | HR-TB | lineage4.6.2.2 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR4820725 | Other | lineage4.1.2.1 | None | ERR2513830 | RR-TB | lineage4.8 | None | ERR4819313 | Other | lineage3.1.1 | None | ERR2514261 | Other | lineage3 | None | ERR4819462 | Other | lineage4 | None | ERR4819456 | Other | lineage4.8 | None | ERR4819528 | RR-TB | lineage3 | None | ERR4820746 | RR-TB | lineage3 | None | ERR4819550 | Other | lineage3 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR4819555 | Other | lineage4.8 | None | ERR4819525 | Other | lineage3 | None | ERR4819567 | Other | lineage2.2.1 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | SRR2100877 | HR-TB | lineage4.1.2 | None | ERR4819593 | Other | lineage4.5 | None | ERR4819636 | Other | lineage3.1.2 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4819640 | RR-TB | lineage4.6.2.2 | None | ERR4820769 | Other | lineage4.8 | None | ERR4819655 | Other | lineage4.8 | None | ERR4820864 | Other | lineage4.9;lineage4.8 | None | ERR2514430 | Other | lineage4.1.1.3.1;lineage3.1.2 | None | ERR4820817 | Other | lineage4.1.2.1 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4819784 | Other | lineage4.1.2.1 | None | SRR6397579 | Other | lineage4.4.1.2 | ca | ERR4819766 | Other | lineage4.4.1.1 | None | SRR6152980 | HR-TB | lineage4.8 | ca | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR4820833 | HR-TB | None | ERR2515032 | Other | lineage3 | None | ERR2514968 | Other | lineage4.3.3 | None | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR4821214 | RR-TB | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR4820959 | Other | lineage4.1.2.1 | None | ERR4820956 | Sensitive | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR270777 | HR-TB | lineage4.1.2 | None | ERR4820107 | RR-TB | None | ERR4820151 | RR-TB | lineage4.8 | None | ERR4820161 | Other | lineage3 | None | ERR4821775 | Other | lineage4 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821286 | Other | lineage4.8 | None | ERR4821245 | Other | lineage4.1.2.1 | None | ERR4821310 | Other | lineage5 | None | ERR4821981 | Other | lineage4.1.2.1 | None | ERR4821360 | Other | lineage4.1.2.1 | None | ERR4822114 | Other | lineage4.1.2.1 | None | ERR4821372 | Other | lineage4.1.2.1 | None | ERR4821409 | Other | lineage4.8 | None | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4821526 | Other | lineage4.3.2 | None | ERR4821584 | Other | lineage4.8.2 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | SRR5818395 | Sensitive | lineage4.9 | None | ERR4821712 | HR-TB | None | SRR6045565 | Other | lineage4.6.2.2 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR5818391 | Other | lineage4.9 | None | SRR5818397 | Other | lineage4.9 | None | SRR6045705 | Other | lineage4.9 | None | SRR5818402 | Other | lineage4.9 | None | SRR5818408 | Other | lineage4.9 | None | SRR5818430 | Sensitive | lineage4.9 | None | SRR5818404 | Other | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR5818446 | Other | lineage4.9 | None | SRR5818452 | Other | lineage4.9 | None | SRR5818459 | Other | lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | SRR5818469 | Other | lineage4.9 | None | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045125 | Other | lineage1.1.2 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6044784 | MDR-TB | lineage3 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046208 | Other | lineage4 | None | ERR4829208 | RR-TB | lineage4.8 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR6397642 | RR-TB | None | SRR6046815 | Other | lineage3 | None | SRR6046824 | HR-TB | None | SRR6046852 | MDR-TB | lineage3 | None | ERR4832002 | Pre-XDR-TB | lineage2.1 | None | SRR6397815 | Other | lineage4.4.1.1 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR6397733 | Other | lineage4.4.1.2 | None | SRR6982192 | Sensitive | lineage4.1.1.3 | None | SRR7131030 | Other | lineage4.1.2.1 | None | SRR6982246 | Sensitive | lineage4 | None | ERR4815784 | Other | lineage2.2.1 | gb | ERR5087596 | Other | La1.8.1 | None | SRR7131094 | Other | lineage4.3.3 | None | SRR7131035 | Sensitive | lineage4.8 | None | SRR9971372 | MDR-TB | lineage4.1.1 | None | SRR7131150 | Other | lineage2.2.1 | None | ERR019855 | Other | lineage3 | None | SRR7517752 | MDR-TB | lineage2.2 | None | DRR188816 | Sensitive | lineage4.2.2 | None | SRR8600288 | Other | La1.8.1 | None | ERR017781 | Other | lineage3 | None | ERR10796558 | Sensitive | lineage4 | None | ERR4819166 | Other | lineage3 | gb | ERR4819324 | Other | lineage4.8 | gb | ERR10796552 | Sensitive | lineage4.3.4.1 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796576 | RR-TB | lineage4.9 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796580 | RR-TB | lineage4.6 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796583 | Other | lineage2.2.1 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796599 | Other | lineage4 | None | ERR10796615 | Other | lineage4 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR4820736 | Sensitive | lineage4.1.2.1 | gb | ERR10796626 | Other | lineage4.1.2 | None | ERR10796627 | Other | lineage4 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796635 | Other | lineage4 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR4192364 | Sensitive | lineage5 | None | ERR3806588 | Other | lineage6 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR4769418 | Other | La1.2 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR5865915 | MDR-TB | lineage2.2.1 | None | ERR5864811 | Pre-XDR-TB | lineage4.3.3 | None | ERR5864927 | MDR-TB | lineage2.2.1 | None | ERR5864713 | MDR-TB | lineage2.2.1 | None | ERR736816 | Other | lineage4.9 | None | ERR5865953 | MDR-TB | lineage2.2.1 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117711 | Other | lineage4.3.4.2.1 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | ERR9117788 | Other | lineage3 | None | ERR9117763 | HR-TB | lineage3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR023450 | RR-TB | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR11342643 | MDR-TB | lineage4.1.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR1062872 | MDR-TB | lineage4.6.1.2 | None | SRR1173833 | Other | lineage4.9 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172282 | Other | lineage4.9 | None | SRR1173361 | MDR-TB | lineage4.6.1 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1175517 | MDR-TB | lineage4.8 | None | SRR1183080 | RR-TB | lineage4.9 | None | SRR1181250 | Other | lineage4.9 | None | SRR1180252 | Other | lineage4.9 | None | SRR1181161 | Other | lineage4.9 | None | SRR15276982 | Pre-XDR-TB | lineage3 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR15368751 | Sensitive | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003020 | Sensitive | lineage2.2.1 | None | SRR18003033 | Other | lineage2.2.1 | None | SRR18911555 | Other | lineage4.1.2.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR18572455 | Sensitive | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None |
|---|
