Run ID: ERR4192364
Sample name:
Date: 01-04-2023 05:05:39
Number of reads: 3694125
Percentage reads mapped: 96.07
Strain: lineage5
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage5 | West-Africa 1 | AFRI_2;AFRI_3 | RD711 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9566 | c.2265C>T | synonymous_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 761431 | p.Ile542Thr | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
Rv1258c | 1407273 | p.Asp23Val | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472571 | n.726G>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472582 | n.737G>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472585 | n.740A>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472767 | n.922G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472996 | n.1151T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476204 | n.2547C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476235 | n.2578A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476363 | n.2706A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476366 | n.2709A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476368 | n.2711T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476374 | n.2717T>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.11 |
inhA | 1673338 | c.-864G>A | upstream_gene_variant | 1.0 |
fabG1 | 1673357 | c.-83G>A | upstream_gene_variant | 0.14 |
fabG1 | 1673359 | c.-81T>C | upstream_gene_variant | 0.14 |
fabG1 | 1673361 | c.-79C>G | upstream_gene_variant | 0.14 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.2 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2101921 | c.1122G>A | synonymous_variant | 1.0 |
ndh | 2103112 | c.-70G>T | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.27 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.28 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290062 | c.-821G>A | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
ald | 3087184 | c.368_373delCCGACG | disruptive_inframe_deletion | 1.0 |
Rv3083 | 3449452 | p.Val317Met | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
alr | 3840241 | p.Pro394Ser | missense_variant | 1.0 |
alr | 3840932 | c.489C>T | synonymous_variant | 1.0 |
ddn | 3986987 | c.144G>T | synonymous_variant | 1.0 |
ddn | 3987180 | p.Asp113Asn | missense_variant | 1.0 |
clpC1 | 4040824 | c.-120C>T | upstream_gene_variant | 1.0 |
embC | 4239843 | c.-20A>C | upstream_gene_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embA | 4244635 | p.Val468Ala | missense_variant | 1.0 |
embA | 4245147 | p.Pro639Ser | missense_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4247933 | p.Gly474Ser | missense_variant | 1.0 |
aftB | 4268735 | c.102C>G | synonymous_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethR | 4326928 | c.-621G>A | upstream_gene_variant | 1.0 |
ethA | 4327103 | p.Gly124Asp | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |