lineage | Count |
---|---|
lineage4.8 | 54 |
lineage6.1.2 | 1 |
lineage2.2.1 | 38 |
La3;lineage4.9 | 1 |
lineage4.9 | 14 |
lineage3 | 14 |
lineage4.3.4.1;lineage4.9 | 1 |
lineage2.2.1;lineage4.5 | 1 |
lineage4.1.2.1 | 5 |
lineage4.3.4.2.1 | 3 |
lineage3.1.2 | 1 |
lineage1.1.2 | 9 |
lineage1.2.2.2 | 4 |
lineage4.6.2.2 | 1 |
lineage2.2.2 | 1 |
lineage4.1.1.3 | 4 |
lineage4.2.1 | 3 |
lineage4.4.1.2 | 2 |
lineage4.1.2 | 1 |
lineage2.2.1.1 | 3 |
lineage4.8;lineage4.9 | 2 |
lineage4.5 | 1 |
lineage3.1.1 | 1 |
lineage3.1.2;lineage4.1.1.3.1 | 1 |
lineage4.4.1.1.1 | 1 |
La1.8.1 | 3 |
lineage4.4.2 | 1 |
lineage5.1 | 1 |
La1.3 | 1 |
lineage2.2.1;lineage4 | 1 |
lineage4.3.3 | 1 |
lineage4.2.2.2 | 1 |
lineage4.3.4.1 | 2 |
lineage4.6.3 | 1 |
lineage4.4.1.1 | 1 |
lineage1.2.1.2 | 1 |
lineage4.1.2;lineage4.9 | 1 |
lineage1.1.3.2 | 1 |
lineage6.3.1 | 1 |
lineage4.6.5 | 1 |
spoligotype | Count |
---|---|
None | 185 |
ID | Drug resistance | Lineage | Country iso2 | ERR2228838 | Other | lineage4.8 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | ERR978762 | Other | lineage4.8 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR8158071 | Sensitive | lineage2.2.1 | None | SRR6152980 | HR-TB | lineage4.8 | ca | SRR6153229 | Sensitive | lineage2.2.1 | ca | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR6359073 | Sensitive | lineage4.9 | None | SRR1173367 | MDR-TB | lineage3 | None | ERR4828764 | Sensitive | lineage2.2.1 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR11342689 | Other | lineage4.1.2.1 | None | SRR5341346 | Sensitive | lineage3 | None | SAMN02599072 | Sensitive | lineage2.2.1 | None | ERR11466014 | Sensitive | lineage4.3.4.2.1 | None | SRR1175108 | Other | lineage3.1.2 | None | SRR6824287 | MDR-TB | lineage2.2.1 | cn | SAMN02599090 | MDR-TB | lineage3 | None | SRR1175131 | Sensitive | lineage2.2.1 | None | SRR7898217 | MDR-TB | lineage1.1.2 | None | ERR911929 | Other | lineage4.8 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR4828772 | HR-TB | lineage2.2.1 | None | ERR2515226 | Sensitive | lineage2.2.1 | None | SRR20970051 | Sensitive | lineage2.2.1 | None | ERR2228813 | Other | lineage4.8 | None | SRR6046737 | Other | lineage4.9 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175096 | Sensitive | lineage1.2.2.2 | None | SRR11348155 | Sensitive | lineage1.1.2 | None | ERR4821318 | HR-TB | lineage4.6.2.2 | gb | SRR1172798 | Sensitive | lineage2.2.1 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR1172706 | Sensitive | lineage2.2.1 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SAMN02599071 | Sensitive | lineage3 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR3283046 | Sensitive | lineage4.9 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR5073741 | Sensitive | lineage2.2.1 | vn | ERR11465777 | Sensitive | lineage4.1.1.3 | None | SAMN02599068 | Sensitive | lineage1.2.2.2 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR22424765 | HR-TB | lineage4.8 | None | SRR1172874 | Sensitive | lineage2.2.1 | None | ERR978726 | RR-TB | lineage4.8 | None | SAMN02599073 | Sensitive | lineage2.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR978752 | Other | lineage4.8 | None | ERR10796559 | Other | lineage4.9 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR6397579 | Other | lineage4.4.1.2 | ca | SRR11348178 | Sensitive | lineage1.1.2 | None | ERR270777 | HR-TB | lineage4.1.2 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | ERR978693 | Other | lineage4.8 | None | SRR16156188 | Sensitive | lineage4.9 | None | SAMN02599089 | MDR-TB | lineage3 | None | ERR2228890 | Other | lineage4.8;lineage4.9 | None | SRR1173139 | Sensitive | lineage4.9 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR4815816 | Other | lineage4.5 | gb | SRR27450469 | Sensitive | lineage2.2.1 | None | ERR5987400 | MDR-TB | lineage2.2.1.1 | None | SRR6397443 | Sensitive | lineage3.1.1 | ca | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | ERR751662 | Sensitive | lineage2.2.1 | th | ERR11465626 | Sensitive | lineage4.3.4.2.1 | None | ERR2228900 | Other | lineage4.8 | None | ERR11465627 | Sensitive | lineage4.3.4.2.1 | None | SRR1173621 | MDR-TB | lineage3 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR978735 | Other | lineage4.8 | None | ERR2228965 | Other | lineage4.8 | None | ERR9119892 | MDR-TB | lineage2.2.1.1 | None | SRR9971026 | Sensitive | lineage4.4.1.1.1 | None | ERR978754 | RR-TB | lineage4.8 | None | SRR1173833 | Other | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR1180487 | Sensitive | lineage1.1.2 | None | SRR8600288 | Other | La1.8.1 | None | SAMN02599067 | Sensitive | lineage2.2.1 | None | SRR5067688 | Sensitive | lineage2.2.1 | vn | ERR3283008 | Other | lineage4.9 | None | ERR978734 | RR-TB | lineage4.8 | None | ERR4811101 | Other | lineage4.4.2 | None | ERR978694 | Other | lineage4.8 | None | SRR5074055 | Sensitive | lineage2.2.1 | vn | SRR16156804 | Sensitive | lineage4.9 | None | ERR2228810 | Other | lineage4.8;lineage4.9 | None | SRR1173445 | Sensitive | lineage3 | None | SRR11348198 | Sensitive | lineage1.1.2 | None | SRR1173014 | MDR-TB | lineage3 | None | SRR6397733 | Other | lineage4.4.1.2 | None | ERR978733 | RR-TB | lineage4.8 | None | SRR24083593 | Sensitive | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR2228910 | Other | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR023450 | RR-TB | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR6896576 | Sensitive | lineage2.2.1 | None | ERR019855 | Other | lineage3 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | ERR4828749 | Sensitive | lineage2.2.1 | None | ERR4192364 | Sensitive | lineage5.1 | None | SRR1172086 | Sensitive | lineage1.1.2 | None | ERR4769423 | Other | La1.3 | None | SRR1169591 | Sensitive | lineage1.1.2 | None | ERR4828879 | HR-TB | lineage3 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR1175105 | MDR-TB | lineage3 | None | ERR4822157 | Sensitive | lineage2.2.1;lineage4 | gb | ERR2229198 | Sensitive | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR978748 | Other | lineage4.8 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR911930 | Other | lineage4.8 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | SRR7236134 | Other | La1.8.1 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4796351 | Sensitive | lineage4.9 | None | ERR978760 | RR-TB | lineage4.8 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR10796617 | Other | lineage4.3.4.1 | None | ERR2446413 | Sensitive | lineage4.6.3 | None | SAMN02599130 | MDR-TB | lineage3 | None | SRR6397815 | Other | lineage4.4.1.1 | None | ERR2229541 | Other | lineage4.8 | None | SRR1175165 | Sensitive | lineage2.2.1 | None | ERR2229366 | Other | lineage4.8 | None | ERR978747 | Other | lineage4.8 | None | ERR2228899 | Other | lineage4.8 | None | SRR1172293 | Sensitive | lineage1.1.2 | None | ERR4820484 | Sensitive | lineage4.8 | None | SRR14781861 | MDR-TB | lineage4.2.1 | None | SRR1169574 | Sensitive | lineage1.1.2 | None | ERR4818128 | Other | lineage4.1.2.1 | None | ERR3283051 | Other | lineage4.9 | None | SRR24083685 | Sensitive | lineage2.2.1 | None | ERR2229147 | Other | lineage4.8 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR10214505 | Sensitive | lineage1.2.1.2 | None | SRR6982246 | Sensitive | lineage4.1.2;lineage4.9 | None | DRR034348 | Other | lineage2.2.1 | None | ERR2027233 | Sensitive | lineage4.1.2.1 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR1035117 | Sensitive | lineage2.2.1 | vn | SAMEA3501046 | RR-TB | lineage4.8 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR978757 | RR-TB | lineage4.8 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | ERR017781 | Other | lineage3 | None | SRR1172710 | Sensitive | lineage1.2.2.2 | None | ERR10796599 | Other | lineage4.8 | None | SAMN02599052 | Sensitive | lineage2.2.1 | None | ERR9786613 | Sensitive | lineage4.1.2.1 | None | ERR978727 | Other | lineage4.8 | None | ERR2229733 | Other | lineage4.8 | dk | ERR978751 | Other | lineage4.8 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR5311095 | Other | La1.8.1 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | SRR1173686 | MDR-TB | lineage3 | None | SRR21732142 | Sensitive | lineage2.2.1 | None | ERR978761 | Other | lineage4.8 | None | ERR4818440 | Other | lineage6.3.1 | None | SRR1175107 | Sensitive | lineage2.2.1 | None | SRR1723651 | MDR-TB | lineage2.2.1 | cn | ERR2229436 | Other | lineage4.8 | None | SRR6153232 | Other | lineage2.2.1 | ca | ERR978756 | Other | lineage4.8 | None | ERR4814745 | Other | lineage4.6.5 | None | SRR5065315 | Sensitive | lineage2.2.1 | vn | SRR1173421 | Other | lineage4.9 | None | SRR26399545 | Sensitive | lineage2.2.1 | None |
---|