Run ID: ERR5311095
Sample name:
Date: 01-04-2023 22:31:14
Number of reads: 1605674
Percentage reads mapped: 46.76
Strain: La1.8.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.8 | M.bovis | None | None | 1.0 |
La1.8.1 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 0.96 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 8741 | c.1440C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
ccsA | 620713 | p.Tyr275His | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.11 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472996 | n.1151T>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.87 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473051 | n.1206T>C | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.69 |
rrs | 1473070 | n.1225G>A | non_coding_transcript_exon_variant | 0.58 |
rrl | 1475750 | n.2093A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.29 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102193 | p.Arg284Trp | missense_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2715125 | p.Thr70Ala | missense_variant | 1.0 |
Rv2752c | 3065988 | p.Glu68Asp | missense_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |