lineage | Count |
---|---|
lineage2.2.1;lineage4.9 | 2 |
lineage4.4.2 | 1 |
lineage4.2.1 | 2 |
lineage4.8 | 39 |
lineage2.2.1.1 | 1 |
lineage4.3 | 1 |
lineage4.4.1.1 | 4 |
lineage2.2.1 | 25 |
lineage4.9 | 18 |
lineage4.1.1.3 | 4 |
La1.8.1 | 1 |
lineage4.4.1.2 | 3 |
lineage4.3.4.1 | 1 |
lineage3 | 3 |
lineage4.3.2.1 | 1 |
lineage4.1.2.1 | 2 |
lineage4.3.3 | 2 |
lineage3.1.2.1 | 1 |
lineage4.6.5 | 2 |
lineage2.2;lineage4 | 1 |
lineage4.7 | 1 |
lineage4.4 | 1 |
lineage4.5 | 1 |
lineage4.2.2.2 | 1 |
lineage4 | 1 |
lineage3.1.2;lineage4.1.1.3.1 | 1 |
lineage4.6.1.1 | 1 |
La1.4 | 1 |
La1.2 | 1 |
lineage4.1.3 | 1 |
lineage4.3.4.2 | 1 |
lineage4.6.3 | 3 |
lineage4.6.2.2 | 1 |
lineage2.2;lineage4.9 | 1 |
lineage2.2.2 | 1 |
lineage4.2.2.1 | 1 |
La1.3 | 1 |
La1.7.1 | 1 |
lineage4.8;lineage4.9 | 1 |
La1.7.X-unk4 | 1 |
lineage4.1.1.3.1 | 1 |
1 |
spoligotype | Count |
---|---|
None | 138 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
ERR4815310 | Other | lineage2.2.1;lineage4.9 | None |
SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None |
ERR10762275 | MDR-TB | lineage4.2.1 | None |
ERR978755 | RR-TB | lineage4.8 | None |
ERR978756 | Other | lineage4.8 | None |
SRR18909918 | Other | lineage2.2.1.1 | None |
ERR3275941 | RR-TB | lineage4.3 | nl |
ERR5917972 | MDR-TB | lineage4.4.1.1 | za |
SRR10869071 | MDR-TB | lineage2.2.1 | None |
ERR13246334 | Sensitive | lineage2.2.1 | None |
SRR16156775 | Other | lineage4.9 | None |
SAMEA3501065 | RR-TB | lineage4.8 | None |
ERR4816852 | Other | lineage4.9 | None |
ERR978693 | Other | lineage4.8 | None |
ERR2512423 | Other | lineage4.1.1.3 | None |
SRR10808568 | Sensitive | lineage4.8 | None |
SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None |
SRR6397815 | Other | lineage4.4.1.1 | None |
ERR4814976 | Other | lineage4.9 | None |
SRR18003049 | Other | lineage2.2.1 | None |
ERR4769493 | Other | lineage4.9 | None |
SRR7236330 | Other | La1.8.1 | None |
ERR126597 | HR-TB | lineage4.4.1.2 | None |
SRR16156697 | RR-TB | lineage2.2.1 | None |
ERR502470 | RR-TB | lineage4.9 | None |
SRR9971080 | RR-TB | lineage2.2.1 | None |
ERR978726_ERR978727 | RR-TB | lineage4.8 | None |
ERR13264888 | Sensitive | lineage4.8 | None |
ERR3283006 | RR-TB | lineage4.9 | None |
ERR978754 | RR-TB | lineage4.8 | None |
DRR188585 | Sensitive | lineage2.2.1 | None |
DRR188893 | Sensitive | lineage2.2.1 | None |
SAMEA3501052 | RR-TB | lineage4.8 | None |
SAMEA3501046 | RR-TB | lineage4.8 | None |
ERR978757 | RR-TB | lineage4.8 | None |
SRR11349207 | RR-TB | lineage2.2.1 | None |
SRR18003024 | RR-TB | lineage2.2.1 | None |
SRR1175491 | MDR-TB | lineage4.3.4.1 | None |
SRR5341365 | Pre-XDR-TB | lineage3 | None |
SRR18002897 | Pre-XDR-TB | lineage2.2.1 | None |
SRR11349147 | RR-TB | lineage4.3.2.1 | None |
SAMEA3501063 | RR-TB | lineage4.8 | None |
SRR14782539 | MDR-TB | lineage4.2.1 | None |
ERR978750 | RR-TB | lineage4.8 | None |
SRR5007204 | Other | lineage4.1.2.1 | None |
SRR6397733 | Other | lineage4.4.1.2 | None |
ERR978733 | RR-TB | lineage4.8 | None |
SRR1049673 | Pre-XDR-TB | lineage3 | None |
SRR18002974 | Other | lineage2.2.1 | None |
SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None |
ERR4822138 | Other | lineage4.1.2.1 | None |
ERR4769554 | RR-TB | lineage4.9 | None |
ERR4816717 | RR-TB | lineage3.1.2.1 | None |
SRR6397585 | Other | lineage4.4.1.2 | None |
ERR7801176 | RR-TB | lineage4.6.5 | None |
SRR16156832 | RR-TB | lineage2.2;lineage4 | None |
SRR18002963 | Other | lineage2.2.1 | None |
SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None |
ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None |
SRR10809050 | Sensitive | lineage4.8 | None |
ERR987707 | MDR-TB | lineage4.7 | None |
ERR4769508 | RR-TB | lineage4.9 | None |
SRR16627752 | RR-TB | lineage4.4 | None |
ERR4769433 | RR-TB | lineage4.9 | None |
ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None |
ERR9634277 | Sensitive | lineage4.8 | None |
SRR15723237 | Other | lineage2.2.1 | None |
SRR3675582 | Other | lineage4.9 | None |
ERR4815816 | Other | lineage4.5 | gb |
SRR18003046 | MDR-TB | lineage2.2.1 | None |
SRR5818586 | RR-TB | lineage4.2.2.2 | None |
SRR5341267 | Pre-XDR-TB | lineage3 | None |
ERR4829333 | Other | lineage4 | None |
ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None |
ERR978747 | Other | lineage4.8 | None |
SRR7535047 | RR-TB | lineage4.6.1.1 | None |
SRR6046250 | Other | lineage4.9 | None |
ERR2228900 | Other | lineage4.8 | None |
SRR18003032 | Other | lineage2.2.1 | None |
ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None |
ERR978746 | RR-TB | lineage4.8 | None |
SRR16278274 | Other | La1.4 | None |
SAMEA3501067 | RR-TB | lineage4.8 | None |
SRR2024944 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR2024960 | MDR-TB | lineage2.2.1 | cn |
SRR9971122 | MDR-TB | lineage4.8 | None |
ERR4769418 | Other | La1.2 | None |
ERR5917985 | MDR-TB | lineage2.2.1 | None |
SRR11342671 | RR-TB | lineage4.1.3 | None |
SRR11342673 | RR-TB | lineage4.3.4.2 | None |
SRR15723298 | Other | lineage2.2.1 | None |
SRR17567917 | RR-TB | lineage4.4.1.1 | None |
ERR400395 | Sensitive | lineage4.6.3 | gb |
ERR400498 | Sensitive | lineage4.6.3 | gb |
ERR400522 | Sensitive | lineage4.6.3 | gb |
SRR18002930 | MDR-TB | lineage2.2.1 | None |
ERR4816322 | Other | lineage4.9 | None |
DRR188888 | Sensitive | lineage2.2.1 | None |
ERR4769417 | Pre-XDR-TB | lineage4.9 | None |
ERR2228910 | Other | lineage4.8 | None |
ERR978761 | Other | lineage4.8 | None |
ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None |
ERR2513382 | RR-TB | lineage4.1.1.3 | None |
ERR4815121 | HR-TB | lineage4.6.2.2 | None |
ERR978694_ERR978693 | Other | lineage4.8 | None |
ERR978726 | RR-TB | lineage4.8 | None |
ERR5162090 | RR-TB | lineage4.9 | None |
ERR7801175 | HR-TB | lineage4.6.5 | None |
SAMEA3501015 | Other | lineage4.8 | None |
ERR978752 | Other | lineage4.8 | None |
ERR176741 | Other | lineage4.9 | None |
ERR4815550 | Other | lineage2.2;lineage4.9 | None |
ERR978762 | Other | lineage4.8 | None |
SRR18002984 | MDR-TB | lineage2.2.2 | None |
ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None |
ERR4817047 | Sensitive | lineage4.2.2.1 | gb |
ERR4769495 | Other | La1.3 | None |
SRR21469201 | Other | La1.7.1 | None |
ERR2228890 | Other | lineage4.8;lineage4.9 | None |
ERR978760 | RR-TB | lineage4.8 | None |
ERR13264887 | Sensitive | lineage4.8 | None |
SRR11342698 | RR-TB | lineage4.4.1.1 | None |
ERR9634271 | Sensitive | lineage4.8 | None |
ERR3797062 | RR-TB | lineage4.9 | None |
ERR3445487 | Other | La1.7.X-unk4 | None |
ERR978735 | Other | lineage4.8 | None |
ERR9992879 | XDR-TB | lineage4.3.3 | None |
SAMEA3501070 | RR-TB | lineage4.8 | None |
SRR7070157 | Other | lineage4.1.1.3.1 | None |
ERR4817069 | RR-TB | None | |
SRR2024989 | MDR-TB | lineage2.2.1 | cn |
SRR9971333 | MDR-TB | lineage4.1.1.3 | None |
ERR4819175 | Other | lineage4.1.1.3 | gb |
ERR9634322 | Sensitive | lineage4.8 | None |
SRR15723109 | Other | lineage2.2.1 | None |
SRR6044952 | Other | lineage4.9 | None |
SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None |
ERR4769530 | RR-TB | lineage4.9 | None |