Run ID: ERR400522
Sample name:
Date: 19-10-2023 15:09:25
Number of reads: 3342302
Percentage reads mapped: 95.88
Strain: lineage4.6.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.3 | Euro-American | T;LAM | None | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8049 | p.Ser250Ala | missense_variant | 1.0 |
gyrA | 9146 | c.1845C>T | synonymous_variant | 0.99 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620072 | p.Pro61Leu | missense_variant | 1.0 |
rpoB | 762375 | p.Ala857Thr | missense_variant | 0.92 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776987 | c.1493delC | frameshift_variant | 1.0 |
mmpS5 | 778673 | p.Pro78Leu | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
inhA | 1674090 | c.-112C>T | upstream_gene_variant | 0.99 |
rpsA | 1834040 | p.Lys167Gln | missense_variant | 0.99 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518609 | p.Met165Ile | missense_variant | 0.11 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878118 | c.390T>C | synonymous_variant | 0.11 |
rpoA | 3878436 | c.72A>G | synonymous_variant | 0.12 |
rpoA | 3878442 | c.66G>C | synonymous_variant | 0.13 |
embC | 4240968 | p.His369Arg | missense_variant | 0.97 |
embC | 4242185 | p.Asp775Asn | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268573 | p.Met88Ile | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |