SRR1175507
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
ERR926165
|
Sensitive
|
lineage4.9
|
None
|
ERR9786639
|
Sensitive
|
lineage4.8
|
None
|
SRR16156804
|
Sensitive
|
lineage4.9
|
None
|
SAMN02628522
|
Pre-XDR-TB
|
lineage3
|
ir
|
SRR11462861
|
Other
|
La1.8.1
|
None
|
SRR1173310
|
Other
|
lineage3.1.1
|
None
|
SRR1175474
|
Other
|
lineage4.9
|
None
|
SRR7131061
|
Other
|
lineage2.2.1
|
None
|
SRR18003030
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR323044
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR3275190
|
Other
|
lineage3
|
nl
|
ERR9786911
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR978751
|
Other
|
lineage4.8
|
None
|
ERR4818904
|
Other
|
lineage4.8
|
None
|
ERR4819314
|
Other
|
lineage1.1.1
|
None
|
ERR1815538
|
Other
|
La1.7.1
|
None
|
SAMEA3501063
|
RR-TB
|
lineage4.8
|
None
|
SRR1140712
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR1158918
|
Sensitive
|
lineage4.9
|
None
|
SRR7645928
|
Other
|
lineage4.7
|
None
|
ERR176580
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR176651
|
Other
|
lineage4.9
|
None
|
SRR18002874
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR137286
|
Other
|
lineage4.9
|
None
|
SRR6045359
|
Sensitive
|
lineage4.9
|
None
|
SRR6046611
|
Sensitive
|
lineage4.9
|
None
|
ERR363453
|
Sensitive
|
lineage4.9
|
None
|
SRR7131075
|
Other
|
lineage4.8
|
None
|
ERR736872
|
HR-TB
|
lineage4.9
|
None
|
ERR4798431
|
Sensitive
|
lineage4.1;lineage4.9
|
None
|
ERR4811031
|
Sensitive
|
lineage4.5
|
None
|
ERR4818646
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR14296220
|
Other
|
La1.8.1
|
None
|
SRR7069922
|
Other
|
lineage2.2.1
|
None
|
SRR18003015
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1175127
|
Other
|
lineage2.2.1.2
|
None
|
SRR7069347
|
Other
|
lineage4.1.2.1
|
None
|
SRR12708409
|
HR-TB
|
lineage4.3.3
|
None
|
ERR736817
|
HR-TB
|
lineage4.3.4
|
None
|
ERR3283028
|
Other
|
La3;lineage4
|
None
|
SRR11342640
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1792025
|
Other
|
La1.8.1
|
None
|
SRR1140574
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR18002941
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4812495
|
Other
|
lineage4.1.2.1
|
pe
|
ERR3797067
|
Other
|
La1.8.1
|
None
|
ERR502481
|
RR-TB
|
lineage4.9
|
None
|
SRR21469200
|
Other
|
La1.7.1
|
None
|
ERR978694_ERR978693
|
Other
|
lineage4.8
|
None
|
SRR5341313
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
ERR978756
|
Other
|
lineage4.8
|
None
|
SRR22175249
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5341455
|
Sensitive
|
lineage4.9
|
None
|
SRR1791747
|
Other
|
La1.8.1
|
None
|
ERR4817667
|
HR-TB
|
lineage4.8
|
None
|
ERR323108
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SRR7069835
|
Other
|
lineage2.2.1
|
None
|
SRR3675210
|
Sensitive
|
lineage4.9
|
None
|
SRR3675292
|
Sensitive
|
lineage4.9
|
None
|
SRR5341310
|
Other
|
lineage1.1.2
|
None
|
ERR6866410
|
Sensitive
|
lineage4.9
|
None
|
SRR3618864
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA3501015
|
Other
|
lineage4.8
|
None
|
SRR20969731
|
Other
|
lineage2.2.1
|
None
|
ERR4769408
|
Other
|
La1.3
|
None
|
ERR4769423
|
Other
|
La1.3
|
None
|
ERR2027257
|
Other
|
lineage4.1.2.1
|
None
|
ERR736848
|
Other
|
lineage4.9
|
None
|
SRR12708371
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR14801759
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR4799547
|
HR-TB
|
lineage2.2.1
|
None
|
SRR3601585
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR349300
|
Sensitive
|
lineage4.9
|
None
|
ERR4815550
|
Other
|
lineage2.2;lineage4.9
|
None
|
ERR369161
|
Sensitive
|
lineage4.9
|
None
|
ERR108125
|
RR-TB
|
lineage4.9
|
None
|
SRR5341293
|
Sensitive
|
lineage4.9
|
None
|
SRR5341425
|
Other
|
lineage4.9
|
None
|
ERR4799025
|
Other
|
lineage4.8
|
None
|
SRR6046492
|
Other
|
lineage4.9
|
None
|
ERR2446509
|
Other
|
lineage3
|
nl
|
ERR978761_ERR978762_ERR978760
|
RR-TB
|
lineage4.8
|
None
|
ERR4596904
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR5341345
|
Sensitive
|
lineage4.9
|
None
|
ERR9786276
|
Sensitive
|
lineage4.8
|
None
|
ERR736856
|
Sensitive
|
lineage4.9
|
None
|
SRR14782054
|
Other
|
lineage4.9
|
None
|
ERR2229198
|
Sensitive
|
lineage4.8
|
None
|
ERR502510
|
Sensitive
|
lineage4.9
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
ERR349265
|
Other
|
lineage4.9
|
None
|
ERR363426
|
Sensitive
|
lineage4.9
|
None
|
ERR400345
|
Other
|
lineage4.9
|
None
|
ERR5087596
|
Other
|
La1.8.1
|
None
|
SRR14801749
|
HR-TB
|
lineage4.9
|
None
|
ERR405219
|
HR-TB
|
La1.7;lineage3.1;lineage4
|
None
|
SRR3675389
|
Other
|
lineage4.9
|
None
|
ERR4799478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662694
|
Other
|
lineage4.9
|
None
|
ERR3283047
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR3797063
|
Sensitive
|
La3;lineage4.9
|
None
|
SRR1175508
|
Sensitive
|
lineage4.9
|
None
|
SAMN02380990
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR10315567
|
HR-TB
|
lineage2.2.1
|
None
|
SRR3675582
|
Other
|
lineage4.9
|
None
|
SRR7496471
|
Sensitive
|
lineage4
|
None
|
ERR6865513
|
Other
|
lineage4.1.2.1
|
None
|
ERR4816198
|
Sensitive
|
lineage4.1.3
|
None
|
ERR502473
|
RR-TB
|
lineage4.9
|
None
|
ERR1063846
|
HR-TB
|
lineage4.9
|
None
|
SRR1184308
|
Sensitive
|
lineage4.9
|
None
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
ERR400326
|
Other
|
lineage4.9
|
None
|
SRR6789624
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR10808805
|
Other
|
La1;lineage4.9
|
None
|
SRR3675318
|
Other
|
lineage4.9
|
None
|
SRR20970043
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
SRR18002967
|
HR-TB
|
lineage2.2.1
|
None
|
SRR18003012
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR751326
|
Other
|
lineage4.9
|
None
|
SRR3675260
|
Sensitive
|
lineage4.9
|
None
|
ERR176779
|
HR-TB
|
lineage4.9
|
None
|
ERR3283032
|
Other
|
lineage4.9
|
None
|
ERR867541
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR363509
|
Sensitive
|
lineage4.9
|
None
|
ERR171142
|
Other
|
lineage3.1.1;lineage4.9
|
None
|
ERR926159
|
Sensitive
|
lineage4.9
|
None
|
ERR4596902
|
MDR-TB
|
lineage3
|
None
|
ERR5987263
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12708372
|
Sensitive
|
lineage4.9
|
None
|
SRR1180179
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR1172885
|
HR-TB
|
lineage4.9
|
None
|
SRR3675541
|
Sensitive
|
lineage4.9
|
None
|
SRR5341453
|
Other
|
lineage4.9
|
None
|
ERR6358951
|
Sensitive
|
lineage4.9
|
None
|
ERR3468488
|
Other
|
La1.8.1
|
None
|
ERR363445
|
Other
|
lineage4.9
|
None
|
ERR3797062
|
RR-TB
|
lineage4.9
|
None
|
ERR133825
|
HR-TB
|
La1;lineage4.9
|
None
|
ERR4819546
|
HR-TB
|
lineage3
|
None
|
ERR1023509
|
Other
|
lineage4.9
|
None
|
ERR8479578
|
Sensitive
|
lineage1.1.3.1
|
None
|
ERR363502
|
Other
|
lineage4.9
|
None
|
SRR5341437
|
Sensitive
|
lineage4.9
|
None
|
SRR7236330
|
Other
|
La1.8.1
|
None
|
ERR126597
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR323056
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR4797193
|
HR-TB
|
lineage1.1.2
|
None
|
SRR3619841
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
SRR22424778
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR9786613
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR978727
|
Other
|
lineage4.8
|
None
|
SRR1049725
|
Other
|
lineage4.1.2.1;lineage4.4.1
|
None
|
ERR4817915
|
Other
|
lineage4.9
|
None
|
ERR6866807
|
Other
|
lineage4.9
|
None
|
SRR12062493
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR3806850
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR7236177
|
Other
|
La1.8.1
|
None
|
ERR926155
|
Sensitive
|
lineage4.9
|
None
|
ERR4596944
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR11349147
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR1140716
|
Other
|
lineage3
|
None
|
SRR1175472
|
RR-TB
|
lineage4.3.4.1
|
None
|
SRR14782539
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4816762
|
Sensitive
|
lineage4.9
|
None
|
ERR10796560
|
Other
|
lineage4.9
|
None
|
ERR4024582
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1049560
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR6866547
|
Other
|
La1.7;lineage4.9;lineage6
|
None
|
ERR4769444
|
HR-TB
|
lineage4.9
|
None
|
ERR752229
|
Other
|
lineage4.5
|
None
|
ERR369162
|
Other
|
lineage4.9
|
None
|
SRR7755657
|
Other
|
lineage4.8
|
None
|
SRR1173568
|
Sensitive
|
lineage4.9
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
ERR4769439
|
HR-TB
|
lineage4.9
|
None
|
ERR978755
|
RR-TB
|
lineage4.8
|
None
|
SRR10993951
|
RR-TB
|
La1.6
|
None
|
SRR1181403
|
Other
|
lineage4.9
|
None
|
ERR978746_ERR978747_ERR978748
|
RR-TB
|
lineage4.8
|
None
|
SRR1172075
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR18912069
|
Other
|
lineage4.1.2.1
|
None
|
SRR6044875
|
Sensitive
|
lineage4.9
|
None
|
SRR1049676
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR1175496
|
Sensitive
|
lineage4.9
|
None
|
SRR1180440
|
Other
|
lineage4.9
|
None
|
ERR369163
|
Sensitive
|
lineage4.9
|
None
|
SRR18003013
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR12708399
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR1238559
|
Other
|
lineage4.9
|
None
|
ERR369158
|
Other
|
lineage4.9
|
None
|
ERR369151
|
Other
|
lineage4.9
|
None
|
ERR473323
|
HR-TB
|
lineage4.9
|
None
|
ERR502474
|
RR-TB
|
lineage4.9
|
None
|
ERR1063839
|
MDR-TB
|
La2;lineage2.2
|
None
|
SRR6046839
|
Other
|
lineage4.9
|
None
|
ERR502943
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
SRR1140753
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
SRR22424765
|
HR-TB
|
lineage4.8
|
None
|
ERR9119733
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8774355
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119669
|
HR-TB
|
lineage4.9
|
None
|
SRR5535933
|
Other
|
lineage4.9
|
None
|
ERR9786592
|
Other
|
lineage4.3.4.2
|
None
|
SRR7755655
|
Other
|
lineage4.1.2.1
|
None
|
SRR15316595
|
RR-TB
|
lineage4.4.2
|
None
|
SRR6982239
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR5153091
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4188247
|
HR-TB
|
lineage4.9
|
None
|
SRR5341400
|
Sensitive
|
lineage4.9
|
None
|
ERR502525
|
Sensitive
|
lineage6.2.1
|
gh
|
SRR7131123
|
Other
|
lineage4.8
|
None
|
ERR4821172
|
RR-TB
|
lineage4.9
|
None
|
SRR7645899
|
Other
|
lineage2.2.1
|
None
|
ERR10796634
|
Other
|
lineage4.7
|
None
|
ERR4178309
|
Other
|
lineage4.1.2.1
|
None
|
ERR4457829
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR702405
|
Sensitive
|
lineage4.9
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR978752
|
Other
|
lineage4.8
|
None
|
ERR363506
|
Sensitive
|
lineage4.9
|
None
|
ERR926162
|
Sensitive
|
lineage4.9
|
None
|
ERR983238
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR363490
|
Sensitive
|
lineage4.9
|
None
|
ERR5908124
|
Other
|
lineage4.8
|
None
|
SRR16156832
|
RR-TB
|
lineage2.2;lineage4
|
None
|
ERR323107
|
Sensitive
|
lineage4.9
|
None
|
SRR5341300
|
HR-TB
|
lineage4.9
|
None
|
ERR363479
|
Sensitive
|
lineage4.9
|
None
|
ERR067712
|
Sensitive
|
lineage4.9
|
None
|
SRR7755645
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1063857
|
MDR-TB
|
La2;lineage4.9
|
None
|
ERR4831616
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070535
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR7131147
|
Other
|
lineage4.1.2.1
|
None
|
ERR9787033
|
Sensitive
|
lineage6.1.2
|
None
|
ERR978762
|
Other
|
lineage4.8
|
None
|
SRR18002976
|
Other
|
lineage2.2.1
|
None
|
SRR11342691
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR181887
|
Other
|
lineage4.9
|
None
|
ERR978750_ERR978752_ERR978751
|
RR-TB
|
lineage4.8
|
None
|
SRR18002937
|
Other
|
lineage2.2.1
|
None
|
SRR12708374
|
Sensitive
|
lineage4.1;lineage4.9
|
None
|
SRR12708398
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR3283014
|
Sensitive
|
La3;lineage4.9
|
None
|
SRR11342651
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR978748
|
Other
|
lineage4.8
|
None
|
ERR1063883
|
HR-TB
|
lineage4.9
|
None
|
SRR10315751
|
MDR-TB
|
lineage4.8
|
None
|
SRR1062880
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR6981999
|
Sensitive
|
lineage2.2.1
|
None
|
ERR970449
|
RR-TB
|
lineage4.1.1.3
|
None
|
SRR3675548
|
Sensitive
|
lineage4.9
|
None
|
ERR363449
|
Sensitive
|
lineage4.9
|
None
|
ERR926158
|
Sensitive
|
lineage4.9
|
None
|
SRR6982141
|
Other
|
lineage4.3.3
|
None
|
ERR4769450
|
Other
|
lineage4.9
|
None
|
ERR4797184
|
Sensitive
|
lineage4.9
|
None
|
ERR3445503
|
Other
|
La1.7.1;La1.7.X-unk4
|
None
|
SRR7645901
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798769
|
Other
|
lineage1.1.3.3
|
None
|
ERR911930
|
Other
|
lineage4.8
|
None
|
ERR3283011
|
Other
|
La3;lineage4.9
|
None
|
ERR349299
|
Other
|
lineage4.9
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR6511621
|
Sensitive
|
lineage4.9
|
None
|
ERR4814639
|
HR-TB
|
lineage4.9
|
None
|
SRR5341323
|
Sensitive
|
lineage4.9
|
None
|
ERR400336
|
Sensitive
|
lineage4.9
|
None
|
SRR6045371
|
Other
|
lineage4.9
|
None
|
ERR3273109
|
HR-TB
|
lineage4
|
None
|
ERR926163
|
Other
|
lineage4.9
|
None
|
ERR3283021
|
HR-TB
|
lineage4.9
|
None
|
DRR184629
|
Other
|
lineage2.2.1
|
None
|
SRR6046376
|
Other
|
lineage3
|
None
|
ERR4821272
|
RR-TB
|
lineage4.1.2.1
|
None
|
SRR7131145
|
Other
|
lineage4.1.2.1
|
None
|
SRR1062920
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
ERR10796593
|
Other
|
lineage4.3
|
None
|
SRR11342698
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR245794
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR926154
|
Sensitive
|
lineage4.9
|
None
|
ERR9787362
|
Sensitive
|
lineage6
|
None
|
ERR2600422
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR978747
|
Other
|
lineage4.8
|
None
|
SRR12416842
|
HR-TB
|
lineage4.9
|
None
|
ERR369160
|
Sensitive
|
lineage4.9
|
None
|
SRR11342685
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR926164
|
Other
|
lineage4.9
|
None
|
ERR9119120
|
Other
|
lineage4.8
|
None
|
ERR1063849
|
HR-TB
|
lineage4.9
|
None
|
SRR14334194
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782405
|
HR-TB
|
lineage4.9
|
None
|
ERR3445501
|
HR-TB
|
La1.7.1;La1.7.X-unk4;lineage7
|
None
|
DRR185000
|
Other
|
lineage1.1.1.1
|
None
|
SRR18002935
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9971065
|
RR-TB
|
lineage2.2.1
|
None
|
ERR473332
|
Other
|
lineage4.9
|
None
|
SRR1173740
|
Other
|
lineage3;lineage4
|
None
|
SRR9970978
|
Sensitive
|
La1;lineage4.1.2
|
None
|
ERR3797086
|
Sensitive
|
lineage4.9
|
None
|
SRR18002875
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR18002964
|
Other
|
lineage2.2.1
|
None
|
SRR1184329
|
Other
|
lineage4.9
|
None
|
SRR1049726
|
Other
|
lineage4.1.2.1;lineage4.4.1.1
|
None
|
SRR6045002
|
RR-TB
|
lineage4.9
|
None
|
SRR6045909
|
Other
|
lineage4.8.1
|
None
|
SRR12708406
|
HR-TB
|
lineage2.2.1;lineage4.9
|
None
|
SRR18002887
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR18002981
|
Other
|
lineage2.2.1
|
None
|
ERR867570
|
RR-TB
|
lineage4.9
|
None
|
ERR10796592
|
Other
|
lineage4.9
|
None
|
SRR6045217
|
Sensitive
|
lineage4.9
|
None
|
ERR970445
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6045503
|
Sensitive
|
lineage4.9
|
None
|
SRR1140736
|
Other
|
lineage4.1.2.1
|
None
|
ERR1063858
|
HR-TB
|
lineage4.9
|
None
|
ERR363500
|
Sensitive
|
lineage4.9
|
None
|
SRR7535082
|
Sensitive
|
lineage4.9
|
None
|
SRR5818694
|
Other
|
lineage3;lineage4.2.2.2
|
None
|
ERR323062
|
Sensitive
|
lineage4.9
|
None
|
ERR3445504
|
Other
|
lineage4.9;lineage6.1.3
|
None
|
ERR4798823
|
HR-TB
|
lineage4
|
None
|
ERR10762275
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR10762495
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR926157
|
Sensitive
|
lineage4.9
|
None
|
SRR1049677
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR1173170
|
Other
|
lineage4.9
|
None
|
ERR9786597
|
Other
|
lineage4.6.2.2
|
None
|
SRR18549032
|
HR-TB
|
lineage2.2.1.2;lineage7
|
None
|
SRR7131149
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR323066
|
Sensitive
|
lineage4.9
|
None
|
ERR3283046
|
Sensitive
|
lineage4.9
|
None
|
SRR7645906
|
Other
|
lineage2.2.1
|
None
|
SRR10808668
|
Sensitive
|
lineage2.2.1
|
None
|
ERR3797029
|
Other
|
lineage4.9
|
None
|
SRR5007204
|
Other
|
lineage4.1.2.1
|
None
|
ERR4811030
|
Sensitive
|
lineage4.9
|
None
|
SRR1175052
|
HR-TB
|
lineage4.9
|
None
|
SRR5341373
|
Other
|
lineage4.9
|
None
|
SRR5007161
|
RR-TB
|
lineage4.1.1.3.1;lineage4.9
|
None
|
ERR978761
|
Other
|
lineage4.8
|
None
|
ERR4810624
|
MDR-TB
|
lineage2.2
|
None
|
ERR911929_ERR911930
|
Other
|
lineage4.8
|
None
|
ERR2027209
|
MDR-TB
|
lineage1.2.1.1
|
None
|
SRR18003004
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR18003009
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002891
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971041
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10315558
|
Sensitive
|
lineage2.2.1
|
None
|
SRR11342684
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR10219876
|
Other
|
lineage4.3.4.2
|
None
|
SRR12142339
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4815121
|
HR-TB
|
lineage4.6.2.2
|
None
|
ERR036207
|
Other
|
lineage4.3;lineage4.9
|
None
|
ERR1063896
|
Sensitive
|
|
None
|
SRR18003042
|
Other
|
lineage2.2.1
|
None
|
SRR3619764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515230
|
Sensitive
|
lineage4.8
|
None
|
SRR6046440
|
Other
|
lineage3.1.2.2
|
None
|
ERR363498
|
Sensitive
|
lineage4.9
|
None
|
SRR21727760
|
Other
|
lineage2.2.1
|
None
|
ERR400320
|
Sensitive
|
lineage4.9
|
None
|
ERR4872077
|
Pre-XDR-TB
|
lineage5.2
|
None
|
SRR1173719
|
Other
|
lineage4.9
|
None
|
SRR3675265
|
Other
|
lineage4
|
None
|
SRR18002974
|
Other
|
lineage2.2.1
|
None
|
ERR5162090
|
RR-TB
|
lineage4.9
|
None
|
SRR6045191
|
Sensitive
|
lineage4.9
|
None
|
SRR11972425
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5341296
|
Sensitive
|
lineage4.9
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|
SRR7131229
|
Other
|
lineage4.1.2.1
|
None
|
SRR6046299
|
Other
|
lineage4.3.1;lineage4.9;lineage6
|
None
|
SRR6824501
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3797048
|
Other
|
La3;lineage4.9
|
None
|
ERR6358979
|
Other
|
lineage4.9
|
None
|
ERR10796589
|
Other
|
lineage4.9
|
None
|
DRR184982
|
Other
|
lineage2.2.1
|
None
|
ERR4769427
|
Other
|
La1.2
|
None
|
ERR4872322
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR171135
|
Other
|
lineage2.2.1
|
za
|
ERR867538
|
Other
|
lineage4.2.2.2
|
None
|
SRR6045548
|
Sensitive
|
lineage4.9
|
None
|
ERR3275709
|
HR-TB
|
lineage3
|
nl
|
SRR18002963
|
Other
|
lineage2.2.1
|
None
|
ERR363421
|
Sensitive
|
lineage4.9
|
None
|
SRR3675514
|
Sensitive
|
lineage4.9
|
None
|
ERR323115
|
Sensitive
|
lineage4.9
|
None
|
ERR1035138
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR7070521
|
Other
|
lineage4.2.1.1
|
None
|
ERR323045
|
HR-TB
|
lineage1;lineage4.9
|
None
|
ERR926160
|
Sensitive
|
lineage4.9
|
None
|
ERR9787256
|
Other
|
lineage6.1.3
|
None
|
SAMEA3501065
|
RR-TB
|
lineage4.8
|
None
|
SRR18002984
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR10809074
|
Sensitive
|
lineage4.9
|
None
|
SRR5341384
|
HR-TB
|
lineage4.9
|
None
|
SRR5818647
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR4818561
|
Sensitive
|
lineage4.9
|
None
|
SRR16627752
|
RR-TB
|
lineage4.4
|
None
|
ERR373945
|
Sensitive
|
lineage4.9
|
None
|
ERR4769521
|
RR-TB
|
lineage4.9
|
None
|
ERR4811708
|
HR-TB
|
lineage4
|
None
|
ERR978755_ERR978756_ERR978754_ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR16156817
|
Other
|
lineage4.9
|
None
|
SRR5341330
|
Other
|
lineage4.9
|
None
|
SRR6046482
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
SRR19304104
|
Other
|
lineage4.8
|
None
|
ERR5087846
|
Other
|
La1.8.1
|
None
|
ERR4812328
|
Other
|
lineage4.3.3
|
pe
|
ERR363474
|
Sensitive
|
lineage4.9
|
None
|
SRR22424787
|
Sensitive
|
lineage4.9
|
None
|
ERR4769474
|
HR-TB
|
lineage4.9
|
None
|
ERR124636
|
Sensitive
|
lineage4.9
|
None
|
ERR216938
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR067699
|
Sensitive
|
La1;lineage2;lineage4.9
|
None
|
SRR3675209
|
Sensitive
|
lineage4.9
|
None
|
SRR5341461
|
HR-TB
|
lineage4.9
|
None
|
ERR926161
|
Sensitive
|
lineage4.9
|
None
|
ERR502478
|
RR-TB
|
lineage4.9
|
None
|
ERR6359074
|
HR-TB
|
lineage4.9
|
None
|
SRR6044841
|
Other
|
lineage4.9
|
None
|
SRR18003047
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12708411
|
HR-TB
|
lineage1.2.2.2
|
None
|
ERR4796351
|
Sensitive
|
lineage4.9
|
None
|
ERR2041726
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMEA3450033
|
Other
|
lineage4.8
|
None
|
SRR18003046
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812763
|
Other
|
lineage2.2.1
|
None
|
SRR3675509
|
Other
|
lineage4.9
|
None
|
ERR4820030
|
Other
|
lineage4.9
|
None
|
SRR6046359
|
Other
|
lineage4.7
|
None
|
DRR188519
|
Other
|
lineage4.4.2
|
None
|
ERR1063859
|
HR-TB
|
La1.7.1;lineage4.9
|
None
|
ERR3439489
|
RR-TB
|
La1.8.1
|
None
|
ERR363499
|
Sensitive
|
lineage4.9
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
SRR11349203
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4813263
|
MDR-TB
|
lineage4.8
|
None
|
ERR971389
|
Sensitive
|
lineage4.9
|
None
|
ERR3797064
|
Other
|
La3;lineage4.9
|
None
|
ERR1035122
|
Sensitive
|
lineage4.9
|
None
|
ERR4812155
|
Other
|
lineage4.9
|
None
|
SAMN02380982
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
DRR185024
|
Other
|
lineage2.2.2
|
None
|
ERR3797047
|
MDR-TB
|
lineage4.9
|
None
|
ERR4769516
|
Sensitive
|
lineage4.9
|
None
|
SRR1180446
|
Other
|
lineage4.9
|
None
|
ERR4769480
|
Other
|
La1.3
|
None
|
SRR5341308
|
Sensitive
|
lineage4.9
|
None
|
SRR4033549
|
Other
|
lineage2.2.2
|
None
|
SRR18002994
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR3797046
|
HR-TB
|
lineage4.9
|
None
|
SRR18003032
|
Other
|
lineage2.2.1
|
None
|
ERR9786346
|
Sensitive
|
lineage4.3.4.2
|
None
|
ERR978734_ERR978733_ERR978735
|
RR-TB
|
lineage4.8
|
None
|
ERR4769452
|
Other
|
lineage4.9
|
None
|
ERR8975044
|
Other
|
lineage4.1.1.2
|
None
|
ERR373947
|
Other
|
lineage4.9
|
None
|
ERR779852
|
Sensitive
|
lineage4.9
|
None
|
ERR970413
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR037504
|
Other
|
lineage4.9.1
|
None
|
ERR349266
|
Sensitive
|
lineage4.9
|
None
|
ERR373946
|
Sensitive
|
lineage4.9
|
None
|
SRR1173185
|
Other
|
lineage4.9
|
None
|
ERR978726_ERR978727
|
RR-TB
|
lineage4.8
|
None
|
SRR9971112
|
Other
|
lineage2.2.1
|
None
|
SRR1238558
|
Other
|
lineage4.9
|
None
|
SRR12708416
|
Sensitive
|
|
None
|
SRR6785281
|
Other
|
lineage4.2.1.1
|
None
|
SRR1062871
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
SRR1196478
|
Other
|
lineage4.9
|
None
|
SRR5341396
|
Other
|
lineage3;lineage4.9
|
None
|
SRR5709926
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7131195
|
Other
|
lineage2.2.1
|
None
|
ERR6359082
|
Other
|
lineage4.9
|
None
|
SRR2010299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3283006
|
RR-TB
|
lineage4.9
|
None
|
SRR9971168
|
Other
|
lineage4.3.2.1
|
None
|
SRR1792011
|
Other
|
La1.8.1
|
None
|
ERR10796566
|
Other
|
lineage4.9
|
None
|
ERR4815815
|
Sensitive
|
lineage4.9
|
None
|
ERR349296
|
Sensitive
|
lineage4.9
|
None
|
ERR4819863
|
RR-TB
|
lineage4.9
|
None
|
ERR4769514
|
Other
|
La1.3
|
None
|
SRR5341469
|
HR-TB
|
lineage4.9
|
None
|
SRR18002987
|
Other
|
lineage2.2.1
|
None
|
SRR1183965
|
Sensitive
|
lineage4.9
|
None
|
SRR7070144
|
Other
|
lineage4.8
|
None
|
ERR176560
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR5341387
|
Other
|
lineage4.9
|
None
|
ERR3275996
|
HR-TB
|
lineage4.3.4.1
|
nl
|
SRR9971046
|
MDR-TB
|
lineage4.8
|
None
|
SRR9971122
|
MDR-TB
|
lineage4.8
|
None
|
ERR4769442
|
Sensitive
|
lineage4.9
|
None
|
ERR4769497
|
Other
|
La1;lineage4.9
|
None
|
ERR4797313
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1173281
|
Other
|
lineage3
|
None
|
SRR18003024
|
RR-TB
|
lineage2.2.1
|
None
|
SRR5341365
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR176778
|
HR-TB
|
lineage4.9
|
None
|
ERR349330
|
Sensitive
|
lineage4.9
|
None
|
ERR926156
|
Sensitive
|
lineage4.9
|
None
|
SRR11342671
|
RR-TB
|
lineage4.1.3
|
None
|
SRR1181256
|
Other
|
lineage4.9
|
None
|
SRR2100067
|
Other
|
lineage4.3.3
|
None
|
ERR4797474
|
Sensitive
|
lineage4.9
|
None
|
ERR736875
|
HR-TB
|
lineage4.9
|
None
|
ERR978694
|
Other
|
lineage4.8
|
None
|
SRR18003045
|
Other
|
lineage2.2.1
|
None
|
SRR7496523
|
Other
|
lineage4.7
|
None
|
ERR10796597
|
Other
|
lineage4.3.3
|
None
|
SRR18002980
|
Other
|
lineage2.2.1
|
None
|
ERR3797065
|
RR-TB
|
lineage4.9
|
None
|
ERR978735
|
Other
|
lineage4.8
|
None
|
SAMN02567682
|
Other
|
lineage4.6.1.1
|
ug
|
ERR4799513
|
HR-TB
|
lineage2.2
|
None
|
SRR8758877
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4800102
|
Sensitive
|
lineage3.1.2.1
|
None
|
SRR1062928
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
ERR4819383
|
RR-TB
|
lineage4.9
|
None
|
ERR736834
|
Sensitive
|
lineage4.9
|
None
|
SRR1792022
|
Other
|
La1.8.1
|
None
|
ERR212125
|
HR-TB
|
lineage4.9
|
None
|
SRR5341298
|
Sensitive
|
lineage4.9
|
None
|
ERR9787030
|
RR-TB
|
lineage6.1.2
|
None
|
SRR6982246
|
Sensitive
|
lineage4.1.2;lineage4.9
|
None
|
ERR1023502
|
MDR-TB
|
lineage2;lineage4
|
None
|
SRR7645972
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR18002998
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2041725
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4831638
|
Sensitive
|
lineage1.1.1;lineage4
|
None
|
SRR5341299
|
HR-TB
|
lineage4.9
|
None
|
ERR1034647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR3324368
|
RR-TB
|
lineage1.1.2;lineage6.2.3
|
None
|
ERR9992784
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
SAMEA3501070
|
RR-TB
|
lineage4.8
|
None
|
SRR5341456
|
Other
|
lineage4.9
|
None
|
ERR4811493
|
HR-TB
|
lineage4.9
|
None
|
SRR19303899
|
Other
|
lineage3
|
None
|
SRR20970016
|
Other
|
lineage2.2
|
None
|
SRR6046442
|
Other
|
lineage3
|
None
|
SAMEA3501046
|
RR-TB
|
lineage4.8
|
None
|
ERR3283025
|
MDR-TB
|
La1.7;lineage4.9
|
None
|
ERR363456
|
Sensitive
|
lineage4.9
|
None
|
SRR18003023
|
Other
|
lineage2.2.1
|
None
|
SAMEA3501067
|
RR-TB
|
lineage4.8
|
None
|
SRR1049582
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR7070134
|
Other
|
lineage3.1.1
|
None
|
SRR1173770
|
Other
|
lineage4.9
|
None
|
SRR28044873
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR369159
|
Sensitive
|
lineage4.9
|
None
|
ERR405209
|
Sensitive
|
La1.7;lineage4.9
|
None
|
SRR9971333
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR1049559
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR10808730
|
Other
|
lineage4.9
|
None
|
ERR181824
|
HR-TB
|
lineage4.9
|
None
|
ERR369156
|
Sensitive
|
lineage4.9
|
None
|
ERR3797079
|
Sensitive
|
lineage4.9
|
None
|
ERR5917985
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5979407
|
Other
|
lineage3
|
None
|
SRR1175491
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR212034
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR363446
|
Sensitive
|
lineage4.9
|
None
|
ERR3797087
|
Sensitive
|
lineage4.9
|
None
|
ERR9786076
|
Sensitive
|
lineage3
|
None
|
SRR11342673
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR12062533
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR12634609
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR17567917
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR18003002
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3445502
|
Sensitive
|
lineage4.9;lineage7
|
None
|
SRR1175500
|
Sensitive
|
lineage4.1.1.3;lineage4.9
|
None
|
SRR15508556
|
Other
|
lineage4.3.4.1
|
None
|
ERR10796568
|
Other
|
lineage4.9
|
None
|
ERR10762248
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1172796
|
Sensitive
|
lineage2.2.1.2
|
None
|
SRR16156697
|
RR-TB
|
lineage2.2.1
|
None
|
ERR363447
|
Other
|
lineage4.9
|
None
|
ERR752012
|
HR-TB
|
lineage1.1.1.1
|
None
|
SRR11342647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR1173777
|
Sensitive
|
lineage4.9
|
None
|
SRR11972367
|
Sensitive
|
lineage2.2.1
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
ERR502517
|
Other
|
lineage5.1.1
|
None
|
ERR369157
|
Sensitive
|
lineage4.9
|
None
|
ERR9992879
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR5341315
|
Other
|
La1.7;lineage3;lineage4.9;lineage7
|
None
|
SRR5341422
|
HR-TB
|
La1.7;lineage4.9;lineage7
|
None
|
SRR10214505
|
Sensitive
|
lineage1.2.1.2
|
None
|
SRR1173182
|
Other
|
lineage4.6.1.1
|
None
|
SRR7069074
|
Other
|
lineage3
|
None
|
ERR3283057
|
Sensitive
|
La3;lineage4.9
|
None
|
ERR4796929
|
Sensitive
|
lineage4.9
|
None
|
ERR212114
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR1915487
|
Other
|
La1.2.BCG
|
None
|
SRR1062918
|
Other
|
lineage3
|
None
|
SAMEA3501052
|
RR-TB
|
lineage4.8
|
None
|
SRR21686597
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR5341412
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR349264
|
Sensitive
|
lineage4.9
|
None
|
ERR9119483
|
Pre-XDR-TB
|
lineage5.2
|
None
|
SRR13423546
|
Other
|
lineage4.4.2
|
None
|
SRR7755649
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR3283055
|
HR-TB
|
lineage4.9
|
None
|
ERR978734
|
RR-TB
|
lineage4.8
|
None
|
SRR19295647
|
Sensitive
|
lineage4.9
|
None
|
ERR038289
|
Other
|
lineage4.3.3
|
None
|
ERR4811101
|
Other
|
lineage4.4.2
|
None
|
SRR18913742
|
Sensitive
|
lineage3.1.3
|
None
|
SRR19303907
|
Other
|
lineage4.8
|
None
|