EBG00000313339 - n.478G>A
Drug resistance types
87 Sensitive
9 RR-TB
40 HR-TB
9 MDR-TB
8 Pre-XDR-TB
0 XDR-TB
45 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 108 |
| lineage2.2.1 | 21 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| La1;lineage4.9 | 3 |
| La1.3 | 4 |
| lineage4.2.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| La3;lineage4.9 | 5 |
| lineage1.1.2 | 2 |
| lineage4.8;lineage4.9 | 2 |
| La1.2 | 1 |
| lineage3 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.3.3 | 3 |
| lineage4.4.1.1.1 | 2 |
| lineage2;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.1.1.3 | 3 |
| lineage4.8 | 2 |
| La2 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.3.2.1 | 3 |
| lineage4 | 2 |
| lineage2.2.1.1 | 4 |
| lineage1.1.3.1 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage3.1.3 | 1 |
| 2 | |
| lineage5.2 | 2 |
| lineage4.6.2.2 | 1 |
| lineage4.3 | 1 |
| lineage4.8.1 | 1 |
| lineage6.1.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage6 | 1 |
| lineage4.9.1 | 1 |
| La1.8.1 | 2 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 198 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR4769514 | Other | La1.3 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR9786076 | Sensitive | lineage3 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR16156817 | Other | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR751326 | Other | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR4769493 | Other | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR1023509 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR736831 | Other | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR4817069 | RR-TB | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR1063896 | Sensitive | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR6358979 | Other | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR5341300 | HR-TB | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9787362 | Sensitive | lineage6 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR7236177 | Other | La1.8.1 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR1159378 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769408 | Other | La1.3 | None | ERR176741 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None |
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