EBG00000313339 - n.1019T>C
Drug resistance types
20 Sensitive
42 RR-TB
16 HR-TB
38 MDR-TB
16 Pre-XDR-TB
0 XDR-TB
97 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 4 |
| lineage2.2.1 | 42 |
| lineage4.3.4.2 | 2 |
| lineage4.8 | 43 |
| lineage4.3.4.1 | 2 |
| lineage4.1.3 | 2 |
| lineage2.2.2 | 3 |
| lineage2.2.1.1 | 2 |
| lineage4.9 | 42 |
| lineage4.2.1 | 4 |
| lineage1.2.2.2 | 1 |
| lineage4.2.2.2 | 2 |
| lineage3;lineage4 | 1 |
| lineage4.7 | 1 |
| lineage4.3.4.2.1 | 7 |
| lineage4.6.1.2 | 4 |
| lineage4.1;lineage4.9 | 1 |
| lineage3 | 12 |
| lineage4.1.2.1 | 10 |
| lineage4.4.1.1 | 2 |
| lineage4.3.3 | 2 |
| lineage4.6.2.2 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.3.2 | 1 |
| lineage1.1.1 | 1 |
| lineage3.1.1 | 4 |
| lineage4.4 | 1 |
| La2 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage4.3.4.2;lineage4.9 | 1 |
| lineage1.1.1.1 | 1 |
| 1 | |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| La1.6 | 1 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4 | 2 |
| lineage4.4.2 | 4 |
| lineage4.1.2 | 1 |
| lineage3.1.3 | 1 |
| lineage4.2.1.1 | 2 |
| lineage4.3;lineage4.9 | 1 |
| lineage5.1.1 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage2;lineage4 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.1.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 229 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR14296220 | Other | La1.8.1 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR18002937 | Other | lineage2.2.1 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | DRR184932 | Other | lineage2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | ERR10796592 | Other | lineage4.9 | None | ERR911930 | Other | lineage4.8 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR6046359 | Other | lineage4.7 | None | ERR978751 | Other | lineage4.8 | None | ERR11465192 | Sensitive | lineage4.3.4.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR1173170 | Other | lineage4.9 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | ERR9119120 | Other | lineage4.8 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | SRR1184329 | Other | lineage4.9 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR1173185 | Other | lineage4.9 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR10796629 | Other | lineage4.1;lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR11465579 | Sensitive | lineage4.3.4.1 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR19303899 | Other | lineage3 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | SRR10315558 | RR-TB | lineage2.2.1 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR4830856 | MDR-TB | lineage4.4.1.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | ERR978694 | Other | lineage4.8 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SRR1181256 | Other | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR2024953 | MDR-TB | lineage2.2.1 | cn | SRR11342669 | Other | lineage4.8 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4819314 | HR-TB | lineage1.1.1 | None | ERR5908124 | Other | lineage4.8 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR16058249 | Sensitive | lineage4.2.2.2 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR19304104 | Other | lineage4.8 | None | ERR978727 | Other | lineage4.8 | None | SRR13888750 | Other | La2 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR6046020 | Other | lineage3 | None | ERR4820030 | Other | lineage4.9 | None | ERR11465490 | Sensitive | lineage4.1.2.1 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342646 | HR-TB | lineage3 | None | SRR1140716 | Other | lineage3 | None | SRR7069074 | Other | lineage3 | None | DRR184982 | Other | lineage2.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR11465829 | Sensitive | lineage4.9 | None | ERR10796631 | Other | lineage4.3.4.2;lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR7236330 | Other | La1.8.1 | None | ERR978752 | Other | lineage4.8 | None | ERR4830887 | Pre-XDR-TB | lineage2.2.1 | None | ERR978734 | RR-TB | lineage4.8 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR1023509 | MDR-TB | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR1180446 | Other | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1196478 | Other | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR3283021 | MDR-TB | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR978761 | Other | lineage4.8 | None | SRR18002987 | Other | lineage2.2.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | ERR4796577 | HR-TB | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR7070134 | Other | lineage3.1.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR6982246 | RR-TB | lineage4.1.2;lineage4.9 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | ERR978747 | Other | lineage4.8 | None | SRR11462861 | Other | La1.8.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR11465777 | Sensitive | lineage4.1.1.3 | None | DRR184629 | Other | lineage2.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR10796581 | Other | lineage4.1.2 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR7070521 | Other | lineage4.2.1.1 | None | ERR978735 | Other | lineage4.8 | None | ERR4818904 | Other | lineage4.8 | None | ERR4818561 | Sensitive | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR978748 | Other | lineage4.8 | None | ERR2517074 | Pre-XDR-TB | lineage3 | gb | ERR4798823 | HR-TB | lineage4 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | ERR4821811 | Sensitive | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR3675582 | Other | lineage4.9 | None | ERR11465830 | Sensitive | lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | SRR7645906 | Other | lineage2.2.1 | None | ERR867555 | Other | lineage3 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR6046376 | Other | lineage3 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR1184308 | RR-TB | lineage4.9 | None | ERR10796560 | Other | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR19303907 | Other | lineage4.8 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR1173281 | Other | lineage3 | None | ERR4819546 | HR-TB | lineage3 | None | DRR185024 | Other | lineage2.2.2 | None | ERR4811101 | Other | lineage4.4.2 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | ERR4820484 | Sensitive | lineage4.8 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR3675389 | Other | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817915 | Other | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR6045952 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR4798769 | Other | lineage1.1.3.3 | None | SRR6045359 | HR-TB | lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR22424765 | HR-TB | lineage4.8 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR7131075 | Other | lineage4.8 | None | SRR1181403 | Other | lineage4.9 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR978756 | Other | lineage4.8 | None | SRR1180440 | Other | lineage4.9 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR7131123 | Other | lineage4.8 | None | SRR18002974 | Other | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131229 | Other | lineage4.1.2.1 | None | ERR10796599 | Other | lineage4.8 | None | ERR4812495 | Other | lineage4.1.2.1 | pe |
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