EBG00000313339 - n.1019T>C
Drug resistance types
26 Sensitive
40 RR-TB
30 HR-TB
53 MDR-TB
25 Pre-XDR-TB
0 XDR-TB
121 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 24 |
| lineage4 | 16 |
| lineage4.1.2.1 | 21 |
| lineage1.2.1.2.1 | 2 |
| lineage1.1.1 | 1 |
| lineage4.9 | 40 |
| lineage3 | 13 |
| lineage3.1.2.1 | 2 |
| lineage2.2.1 | 58 |
| 8 | |
| lineage4.1.1.3.1 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.2.2.2;lineage3 | 1 |
| lineage4.2.2.2 | 3 |
| lineage4.4 | 2 |
| lineage4.4.1.1 | 10 |
| lineage3.1.1 | 4 |
| lineage4.8.2 | 1 |
| lineage1.1.2 | 3 |
| lineage4.1.2 | 2 |
| lineage4.7 | 2 |
| lineage4.3.3 | 2 |
| lineage4.6.2.2 | 3 |
| lineage4.6 | 2 |
| lineage1.2.2.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.2.1.1 | 2 |
| lineage2.2.1.1 | 3 |
| lineage4.3.4.1 | 2 |
| lineage4.3.4.2 | 5 |
| lineage4.6.1.1 | 2 |
| lineage4.2.1 | 6 |
| lineage4.3.2.1 | 1 |
| lineage4.3.4.2.1 | 6 |
| lineage2.2.2 | 4 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.3.4 | 1 |
| La1 | 1 |
| La1.8.1 | 3 |
| La1.3 | 2 |
| lineage1.1.3.3 | 1 |
| lineage4.4.2 | 5 |
| lineage1.1.1.1 | 1 |
| lineage4.3.2 | 2 |
| lineage5.1.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.6.1.2 | 5 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.6 | 1 |
| lineage4.5 | 2 |
| La2 | 1 |
| lineage2.2 | 2 |
| lineage3.1.3 | 1 |
| lineage6.1.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage1.2.2 | 1 |
| lineage4.1.3 | 1 |
| lineage4;lineage2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 295 |
Geographic prevalence
Country level data for this variant is available for 18 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4817628 | Sensitive | lineage4.8 | gb | ERR4818904 | Other | lineage4.8 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5007172 | Sensitive | lineage4.1.2.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR2514181 | Other | lineage1.2.1.2.1 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR2513762 | Sensitive | lineage3 | gb | ERR4819546 | HR-TB | lineage3 | None | ERR4820484 | Other | lineage4.8 | None | ERR4819720 | Other | lineage3.1.2.1 | gb | ERR4820503 | Other | lineage2.2.1 | None | ERR2517074 | Pre-XDR-TB | lineage3 | gb | ERR4819863 | RR-TB | lineage4.9 | None | ERR4819910 | Other | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR1023509 | Other | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4820030 | Other | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR4821811 | RR-TB | lineage4.9 | None | SRR6045553 | RR-TB | lineage4.9 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6046210 | Other | lineage4 | None | SRR5818694 | RR-TB | lineage4.2.2.2;lineage3 | None | SRR6044838 | Other | lineage4.9 | None | SRR5818690 | Other | lineage4.2.2.2 | None | SRR6044787 | Other | lineage4.4 | None | SRR6045928 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6044896 | Other | lineage4.8 | gb | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6045022 | Other | lineage3.1.1 | None | SRR6046020 | Other | lineage3 | None | SRR6045999 | Sensitive | lineage4.8.2 | gb | SRR6045261 | Other | lineage1.1.2 | gb | ERR4830856 | MDR-TB | lineage4.4.1.1 | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046376 | Other | lineage3 | None | ERR4829907 | HR-TB | lineage4.1.2.1 | it | SRR6045359 | Sensitive | lineage4.9 | None | ERR4830868 | MDR-TB | lineage4.4.1.1 | sz | ERR4830864 | MDR-TB | lineage4.4.1.1 | sz | ERR4830674 | Sensitive | lineage4.1.2.1 | dz | ERR4829536 | Sensitive | lineage2.2.1 | it | ERR4829615 | Sensitive | lineage4.3.3 | None | ERR4829725 | HR-TB | lineage4.6.2.2 | it | ERR4828805 | Other | lineage4.6 | None | ERR4829772 | MDR-TB | lineage4.1.2.1 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046442 | Other | lineage3 | None | ERR4829788 | MDR-TB | lineage4.3.3 | it | ERR4830887 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046482 | HR-TB | None | ERR502479 | RR-TB | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR6397640 | Other | lineage4.2.1.1 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR7131026 | Other | lineage2.2.1 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6982246 | Sensitive | lineage4 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131182 | Other | lineage4.1.2.1 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR8649119 | Other | lineage4.6 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | DRR184932 | Other | lineage2.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | DRR184903 | Sensitive | lineage2.2.2 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR036207 | Other | lineage4.9 | None | DRR184982 | RR-TB | lineage2.2.1 | None | ERR067712 | HR-TB | lineage4 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796568 | Other | lineage4.9 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796592 | Other | lineage4 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796599 | Other | lineage4 | None | ERR10796629 | Other | lineage4 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR3283021 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4769516 | Other | La1.3 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR4769517 | Other | La1.3 | None | ERR4796577 | MDR-TB | None | ERR4769539 | Sensitive | lineage4.9 | None | ERR5908124 | Other | lineage4.8 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4811101 | Other | lineage4.4.2 | None | ERR4797974 | Other | lineage1.1.2 | in | ERR4798823 | HR-TB | lineage4 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4812495 | Other | lineage4.1.2.1 | pe | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR6197036 | Other | lineage4 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119120 | Other | lineage4.8 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR983241 | MDR-TB | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315641 | MDR-TB | lineage4.4.1.1.1 | None | SRR10315709 | MDR-TB | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049672 | Other | lineage3 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR10272572 | Sensitive | lineage4.4.1.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140736 | RR-TB | None | SRR1173170 | Other | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | SRR1173182 | Other | lineage4.6.1.1 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1173740 | Other | None | SRR1180446 | Other | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR11972215 | RR-TB | lineage4.5 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972327 | Pre-XDR-TB | lineage2.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR13888750 | Other | La2 | None | SRR14296220 | Other | La1.8.1 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR16058218 | MDR-TB | lineage4.3.4.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16058205 | HR-TB | lineage2.2.1 | None | SRR16058249 | Sensitive | lineage4.2.2.2 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003036 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18003033 | Other | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18911462 | Sensitive | lineage1.2.1.2.1 | None | SRR18913779 | Other | lineage3 | None | SRR19304104 | Other | lineage4.8 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303899 | Other | lineage3 | None | SRR19303907 | Other | lineage4.8 | None | SRR19304083 | Other | lineage4.4.1.1 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR20995191 | Sensitive | lineage4.4.1.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR21658552 | Other | lineage6.1.1 | None | SRR21727888 | Other | lineage1.2.1.2 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR2486952 | Sensitive | lineage4.8 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR4815225 | RR-TB | lineage1.2.2 | None | SRR3675265 | Other | lineage4 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4 | None | ERR1665405 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675227 | Other | lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR2024953 | MDR-TB | lineage2.2.1 | cn | SRR3675282 | Other | None | SAMEA3501015 | Other | lineage4.8 | None | SRR3675509 | Other | lineage4.9 | None | ERR2027232 | Other | lineage4.3.4.2 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4816782 | Other | lineage4.1.2.1 | None | ERR4817497 | Other | lineage1.1.2 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR4033523 | Other | lineage2.2 | None | ERR4817667 | HR-TB | lineage4.8 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817915 | RR-TB | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR2432997 | Other | lineage4.8 | None |
|---|
