EBG00000313339 - n.1019T>C


Drug resistance types
26 Sensitive 40 RR-TB 28 HR-TB 50 MDR-TB 25 Pre-XDR-TB 0 XDR-TB 116 Other
lineage Counts
lineage Count
lineage6.1.1 1
lineage2.2.1 57
lineage1.2.1.2 1
lineage4 16
lineage2.2.1.1 3
lineage4.9 42
lineage4.6.2.2 2
lineage4.8 21
lineage1.2.2 1
8
lineage3.1.2.1 1
lineage4.3.4.2 5
lineage4.4.1.1 8
lineage4.1.3 1
lineage4.5 2
lineage4;lineage2 1
lineage4.1.2.1 20
lineage1.1.2 1
lineage2.2 2
lineage4.6.1.2 5
lineage4.3.4.1 3
lineage1.1.1 1
lineage1.2.1.2.1 2
lineage3 12
lineage4.2.2.2 3
lineage4.1.1.3 4
lineage4.4 2
lineage4.2.2.2;lineage3 1
lineage4.1.1.3.1 1
lineage3.1.1 4
lineage4.1.2 2
lineage4.7 2
lineage4.6 2
lineage4.3.3 1
lineage3.1.2.2 1
lineage1.2.2.2 1
lineage4.2.1.1 2
lineage4.6.1.1 2
lineage4.2.1 6
lineage4.3.2.1 1
lineage4.3.4.2.1 6
lineage2.2.2 4
lineage4.9;lineage1.1 1
lineage4.9;lineage4.1 1
lineage4.3.4 1
La1 1
La1.8.1 3
La1.3 2
lineage1.1.3.3 1
lineage4.4.2 5
lineage4.3.2 2
lineage1.1.1.1 1
lineage5.1.1 1
lineage4.4.1.1.1 1
lineage4.4.1.1;lineage4.1.2.1 1
La1.6 1
La2 1
lineage3.1.3 1
spoligotype Counts
spoligotype Count
None 285
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR21658552 Other lineage6.1.1 None
SRR21727760 Other lineage2.2.1 None
SRR21727888 Other lineage1.2.1.2 None
SRR22424765 MDR-TB lineage4 None
SRR22424778 RR-TB lineage2.2.1.1 None
SRR22424787 Sensitive lineage4.9 None
ERR4814639 HR-TB lineage4 None
ERR4815121 HR-TB lineage4.6.2.2 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
SAMEA3501065 RR-TB lineage4.8 None
ERR4815225 RR-TB lineage1.2.2 None
ERR1665405 Pre-XDR-TB lineage2.2.1 None
SRR3675227 Other lineage4.9 None
ERR2229791 RR-TB lineage4.9 None
SRR3675265 Other lineage4 None
SRR3675282 Other None
SRR3675509 Other lineage4.9 None
SAMEA3501015 Other lineage4.8 None
ERR4816717 RR-TB lineage3.1.2.1 None
ERR4813263 MDR-TB lineage4.8 None
ERR2027232 Other lineage4.3.4.2 None
ERR2027255 HR-TB lineage4.4.1.1 None
ERR4816198 Sensitive lineage4.1.3 None
ERR4816548 MDR-TB lineage4.5 None
ERR4816762 Other lineage4;lineage2 None
ERR4816782 Other lineage4.1.2.1 None
ERR4817497 Other lineage1.1.2 None
SRR4033523 Other lineage2.2 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
ERR4815815 Sensitive lineage4 None
ERR3275996 HR-TB lineage4.3.4.1 nl
ERR4818646 Sensitive lineage4.1.2.1 None
ERR4817667 HR-TB lineage4.8 None
ERR2432997 Other lineage4.8 None
SAMN02380982 MDR-TB lineage4.3.4.2 None
SAMEA3450033 Other lineage4.8 None
ERR4817915 RR-TB lineage4.9 None
ERR4818904 Other lineage4.8 None
SAMEA3501063 RR-TB lineage4.8 None
SRR5007204 Other lineage4.1.2.1 None
SRR5007172 Sensitive lineage4.1.2.1 None
ERR4818561 HR-TB lineage4 None
SAMEA3501067 RR-TB lineage4.8 None
ERR4819314 Other lineage1.1.1 None
ERR4819383 RR-TB lineage4.9 None
ERR2514181 Other lineage1.2.1.2.1 None
ERR4819546 HR-TB lineage3 None
ERR4820484 Other lineage4.8 None
ERR1023509 Other None
ERR4820503 Other lineage2.2.1 None
ERR4819863 RR-TB lineage4.9 None
ERR4819910 Other lineage4.9 None
SRR2024953 MDR-TB lineage2.2.1 cn
SAMEA3501070 RR-TB lineage4.8 None
SAMEA3501052 RR-TB lineage4.8 None
ERR4820030 Other lineage4.9 None
ERR4821811 RR-TB lineage4.9 None
SAMEA3501046 RR-TB lineage4.8 None
SRR5818690 Other lineage4.2.2.2 None
SRR6045553 RR-TB lineage4.9 None
ERR4821172 RR-TB lineage4.9 None
SRR6046210 Other lineage4 None
ERR4821143 RR-TB lineage4.9 None
ERR4821272 RR-TB lineage4.1.2.1 None
SRR6045621 Other lineage4.1.1.3 None
SRR6044787 Other lineage4.4 None
SRR5818694 RR-TB lineage4.2.2.2;lineage3 None
SRR6044873 Other lineage4.1.1.3.1 None
SRR6044838 Other lineage4.9 None
SRR6045928 Other lineage4.9 None
SRR6045944 Other lineage4.1.2.1 None
SRR6045022 Other lineage3.1.1 None
SRR6044958 Other lineage4.4.1.1 None
SRR6045952 HR-TB None
SRR6046020 Other lineage3 None
ERR2517074 Pre-XDR-TB lineage3 gb
SRR6045359 Sensitive lineage4.9 None
SRR6045384 Other lineage4.1.2 None
SRR6046359 Other lineage4.7 None
SRR6046376 Other lineage3 None
ERR4828805 Other lineage4.6 None
ERR4830856 MDR-TB lineage4.4.1.1 None
ERR4829615 Sensitive lineage4.3.3 None
ERR4829772 MDR-TB lineage4.1.2.1 None
ERR4830887 Pre-XDR-TB lineage2.2.1 None
SRR6046440 Other lineage3.1.2.2 None
SRR6046442 Other lineage3 None
ERR502474 Pre-XDR-TB lineage4.9 None
SRR6046484 Other lineage1.2.2.2 None
SRR6046839 Other lineage4.9 None
SRR6046482 HR-TB None
SRR6397640 Other lineage4.2.1.1 None
ERR502473 Pre-XDR-TB lineage4.9 None
ERR502479 RR-TB lineage4.9 None
ERR502478 RR-TB lineage4.9 None
SRR6982239 HR-TB lineage4.1.1.3 None
ERR502481 Pre-XDR-TB lineage4.9 None
SRR6785281 Other lineage4.2.1.1 None
ERR11465777 Sensitive lineage4.1.1.3 None
SRR6982246 Sensitive lineage4 None
SRR7131026 Other lineage2.2.1 None
ERR4831863 HR-TB lineage2.2.1.1 None
ERR4812495 Other lineage4.1.2.1 pe
SRR7131075 Other lineage4.8 None
SRR7131216 Other lineage4.1.2.1 None
SRR7131147 Other lineage4.1.2.1 None
SRR7131123 Other lineage4.8 None
SRR7131145 Other lineage4.1.2.1 None
SRR7131149 Pre-XDR-TB lineage4.8 None
SRR7131182 Other lineage4.1.2.1 None
SRR7131230 HR-TB lineage4.3.4.2 None
SRR7645899 RR-TB lineage2.2.1 None
SRR7131229 Other lineage4.1.2.1 None
ERR11465830 Sensitive lineage4.9 None
SRR7535047 RR-TB lineage4.6.1.1 None
SRR7645928 RR-TB lineage4.7 None
SRR7645901 MDR-TB lineage2.2.1 None
SRR7645906 Other lineage2.2.1 None
SRR7645972 MDR-TB lineage4.2.1 None
SRR7645971 Other lineage2.2.1 None
SRR8649119 Other lineage4.6 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
SRR7755649 MDR-TB lineage4.2.1 None
DRR184932 Other lineage2.2.1 None
SRR9971168 Other lineage4.3.2.1 None
DRR184629 Other lineage2.2.1 None
SRR7755688 Pre-XDR-TB lineage4.2.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR7765062 Pre-XDR-TB lineage4.1.2.1 None
DRR184903 Sensitive lineage2.2.2 None
ERR10219876 Other lineage4.3.4.2 None
DRR184982 RR-TB lineage2.2.1 None
DRR185024 Other lineage2.2.2 None
ERR036207 Other lineage4.9 None
ERR11465579 Sensitive lineage4.3.4.1 None
ERR11465192 Sensitive lineage4.3.4.2.1 None
ERR067712 HR-TB lineage4 None
ERR10762248 MDR-TB lineage4.2.1 None
ERR1023502 MDR-TB lineage2.2.1 None
ERR1034647 MDR-TB lineage4.1.1.3 None
ERR10796581 HR-TB lineage4.1.2 None
ERR10796553 Other lineage4.9;lineage1.1 None
ERR10796560 MDR-TB lineage4.9;lineage4.1 None
ERR10796568 Other lineage4.9 None
ERR10762297 MDR-TB lineage4.2.1 None
ERR10762495 MDR-TB lineage2.2.1 None
ERR108125 Pre-XDR-TB lineage4.9 None
ERR10796599 Other lineage4 None
ERR10796631 Other lineage4.3.4 None
ERR10796592 Other lineage4 None
ERR10796629 Other lineage4 None
ERR11465490 Sensitive lineage4.1.2.1 None
ERR11465829 Sensitive lineage4.9 None
ERR3283010 Other La1 None
ERR4596910 Sensitive lineage4 None
ERR3283021 HR-TB None
ERR3806850 HR-TB lineage4.1.2.1 None
ERR4024582 MDR-TB lineage4.1.2.1 None
ERR3283033 Sensitive lineage4.9 None
ERR3439489 RR-TB La1.8.1 None
ERR3797047 HR-TB lineage4 None
ERR4457829 MDR-TB lineage4.1.2.1 None
ERR4596902 HR-TB lineage3 None
ERR4596904 MDR-TB lineage3.1.1 None
ERR4596944 MDR-TB lineage3.1.1 None
ERR4769516 Other La1.3 None
ERR4769539 Sensitive lineage4.9 None
ERR4769517 Other La1.3 None
ERR4798769 Other lineage1.1.3.3 None
ERR4796577 MDR-TB None
ERR4808964 RR-TB lineage2.2.1 None
ERR4798823 HR-TB lineage4 None
ERR4811101 Other lineage4.4.2 None
ERR4809333 Pre-XDR-TB lineage2.2.2 None
ERR5908124 Other lineage4.8 None
ERR6866241 Other lineage4.3.2 None
ERR5987263 MDR-TB lineage2.2.1 None
ERR6197036 Other lineage4 None
ERR752012 HR-TB lineage1.1.1.1 None
ERR751345 Other lineage5.1.1 None
SRR10315558 Sensitive lineage2.2.1 None
ERR9117805 Other lineage4.3.2 None
ERR9119120 Other lineage4.8 None
ERR9285979 RR-TB lineage3.1.1 None
SRR10272572 Sensitive lineage4.4.1.1 None
SRR10315465 MDR-TB lineage4.4.1.1 None
ERR9119733 MDR-TB lineage2.2.1 None
ERR9786911 HR-TB lineage4.1.2.1 None
ERR983241 MDR-TB lineage2.2.1 None
SRR10315709 MDR-TB lineage2.2.1 None
SRR10315641 MDR-TB lineage4.4.1.1.1 None
SRR1049560 MDR-TB lineage4.3.4.2.1 None
SRR10315751 MDR-TB lineage4.8 None
SRR1049581 MDR-TB lineage4.6.1.2 None
SRR1049559 MDR-TB lineage4.3.4.2.1 None
SRR1049582 MDR-TB lineage4.6.1.2 None
SRR1062918 Pre-XDR-TB lineage3 None
SRR1049725 RR-TB lineage4.1.2.1 None
SRR1062871 MDR-TB lineage4.3.4.2.1 None
SRR1062880 MDR-TB lineage4.6.1.2 None
SRR1049672 Other lineage3 None
SRR1049726 MDR-TB lineage4.4.1.1;lineage4.1.2.1 None
SRR11342688 Other lineage4.2.2.2 None
SRR10993951 RR-TB La1.6 None
SRR11342685 HR-TB lineage4.4.1.1 None
SRR1062928 RR-TB lineage4 None
SRR11462861 Other La1.8.1 None
SRR1140736 RR-TB None
SRR1140712 MDR-TB lineage4.6.1.2 None
SRR1140716 Pre-XDR-TB lineage3 None
SRR1140753 MDR-TB lineage4.3.4.2.1 None
SRR1173185 HR-TB lineage4.9 None
SRR1173170 Other lineage4.9 None
SRR1173182 Other lineage4.6.1.1 None
SRR1173450 RR-TB lineage4.9 None
SRR1173281 RR-TB lineage3 None
SRR1173385 Sensitive lineage4.9 None
SRR1173515 HR-TB lineage4.9 None
SRR1184308 Sensitive lineage4.9 None
SRR1173740 Other None
SRR1173770 Other lineage4.9 None
SRR1180440 Other lineage4.9 None
SRR1180446 Other lineage4.9 None
SRR1196478 MDR-TB lineage4.9 None
SRR1184329 MDR-TB lineage4.9 None
SRR1196545 HR-TB lineage4.9 None
SRR15316595 RR-TB lineage4.4.2 None
SRR11972215 RR-TB lineage4.5 None
SRR11972327 Pre-XDR-TB lineage2.2.1 None
SRR11972369 Pre-XDR-TB lineage2.2.1 None
SRR13423546 Other lineage4.4.2 None
SRR13888750 Other La2 None
SRR11972417 MDR-TB lineage2.2.1 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR14296220 Other La1.8.1 None
SRR14801325 Pre-XDR-TB lineage4.2.1 None
SRR15315797 RR-TB lineage2.2.1 None
SRR16156188 HR-TB lineage4.9 None
SRR16058218 MDR-TB lineage4.3.4.1 None
SRR16058205 HR-TB lineage2.2.1 None
SRR16058249 Sensitive lineage4.2.2.2 None
SRR16627752 RR-TB lineage4.4 None
SRR18002909 MDR-TB lineage2.2.1 None
SRR18002874 MDR-TB lineage2.2.1 None
SRR18002901 MDR-TB lineage2.2.1 None
SRR18002937 Other lineage2.2.1 None
SRR18002935 Pre-XDR-TB lineage2.2.1 None
SRR18002945 RR-TB lineage2.2.1 None
SRR18002941 RR-TB lineage2.2.1 None
SRR18002981 Other lineage2.2.1 None
SRR18002948 Other lineage2.2 None
SRR18002963 Other lineage2.2.1 None
SRR18002974 Pre-XDR-TB lineage2.2.1 None
SRR18002964 Other lineage2.2.1 None
SRR18002984 MDR-TB lineage2.2.2 None
SRR18002980 Other lineage2.2.1 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
SRR18002987 Other lineage2.2.1 None
SRR18002995 Other lineage4.4.2 None
SRR18003023 Other lineage2.2.1 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
SRR18003033 Other lineage2.2.1 None
SRR18003032 Other lineage2.2.1 None
SRR18003015 MDR-TB lineage2.2.1 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR18003036 Other lineage2.2.1 None
SRR18003042 Other lineage2.2.1 None
SRR18003038 Other lineage2.2.1 None
SRR18003049 Other lineage2.2.1 None
SRR18003045 Other lineage2.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR18003046 MDR-TB lineage2.2.1 None
SRR18909918 Other lineage2.2.1.1 None
SRR18913742 Sensitive lineage3.1.3 None
SRR18911462 Sensitive lineage1.2.1.2.1 None
SRR19303819 Other lineage4.6.2.2 None
SRR18913779 Other lineage3 None
SRR19303818 Other lineage4.3.4.2 None
SRR19303899 Other lineage3 None
SRR19303907 Other lineage4.8 None
SRR5709926 MDR-TB lineage2.2.1 None
SRR19304083 Other lineage4.4.1.1 None
SRR19304104 Other lineage4.8 None
SRR20995191 Sensitive lineage4.4.1.1 None