EBG00000313339 - n.544T>C
Drug resistance types
97 Sensitive
25 RR-TB
49 HR-TB
43 MDR-TB
22 Pre-XDR-TB
0 XDR-TB
88 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 17 |
| lineage4.9 | 95 |
| La2 | 1 |
| 15 | |
| lineage4.2.2.1 | 1 |
| La1.8.1 | 5 |
| lineage4.4 | 1 |
| lineage4 | 15 |
| lineage4.1.2.1 | 10 |
| lineage2.2.1 | 32 |
| lineage3.1.3 | 1 |
| lineage4.4.2 | 3 |
| lineage2.2 | 7 |
| La1.7.1 | 3 |
| lineage3 | 14 |
| lineage4.1.1.3 | 8 |
| lineage4.8 | 14 |
| lineage4.6.2.2 | 4 |
| lineage4.4.1.1 | 4 |
| lineage4.1.1.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage4.5 | 2 |
| lineage4.6.1.2 | 8 |
| lineage4;lineage2 | 1 |
| lineage2.2.2 | 2 |
| lineage4.2.1 | 5 |
| lineage4.1.1 | 1 |
| lineage6.3.1 | 2 |
| lineage3.1.1 | 2 |
| lineage1.1.1 | 3 |
| lineage4.1.2 | 1 |
| lineage4.1.4 | 1 |
| lineage4.2.1.1 | 2 |
| lineage4.1 | 1 |
| lineage4.7 | 3 |
| lineage4.8.1 | 1 |
| lineage4.9.1 | 1 |
| La1.7.X-unk4 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4.4.1.2 | 1 |
| La1.3 | 7 |
| lineage4.9;La1.3 | 1 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage4.3.2 | 1 |
| lineage5.1.1 | 3 |
| lineage4.6.5 | 1 |
| lineage6 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.8;lineage4.3.3 | 4 |
| lineage4.6.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage2.2.1.2 | 2 |
| lineage4.9;lineage2.2 | 1 |
| lineage2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 324 |
Geographic prevalence
Country level data for this variant is available for 36 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16370416 | MDR-TB | lineage4.3.3 | None | SRR16157123 | Other | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR14782405 | HR-TB | None | SRR16149133 | MDR-TB | lineage4.2.2.1 | None | SRR1792011 | Other | La1.8.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR20632814 | Sensitive | lineage4 | None | SRR18912069 | Other | lineage4.1.2.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR2100537 | Sensitive | lineage3 | None | SRR2100532 | Sensitive | lineage3 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR21469200 | Other | La1.7.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | ERR1750881 | Sensitive | lineage4.1.1.3 | zw | SRR22424787 | Sensitive | lineage4.9 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4 | None | ERR4815471 | Other | lineage4.9 | None | ERR1750874 | Sensitive | lineage4.8 | bw | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR176771 | Sensitive | None | ERR1750885 | Sensitive | lineage2.2.1 | zw | ERR1750883 | Sensitive | lineage3 | zw | ERR1750889 | Other | lineage4.4.1.1 | None | ERR1750888 | Sensitive | lineage4.8 | zw | ERR1750906 | Sensitive | lineage4.3.3 | za | ERR1750896 | Sensitive | lineage2.2.1 | zw | ERR1750930 | Sensitive | lineage4.1.1.3 | za | ERR1750909 | RR-TB | lineage4.1.1.2 | None | ERR1750922 | Sensitive | lineage4.1.1.3 | za | ERR1750920 | Sensitive | lineage4.4.1.1 | za | ERR1750931 | Sensitive | lineage4.1.2.1 | za | ERR1750923 | Sensitive | lineage4.8 | za | ERR1750919 | Sensitive | lineage4.4.1.1 | za | ERR4815517 | Other | lineage1.2.2.2 | None | SRR3675270 | HR-TB | None | ERR216978 | Sensitive | lineage4.3.4.2.1 | None | ERR4814963 | Other | lineage4.1.2.1 | None | ERR4816964 | Other | lineage4.9 | None | ERR4816991 | Sensitive | lineage4.9 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4816548 | MDR-TB | lineage4.5 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4815870 | HR-TB | lineage4.6.2.2 | gb | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | ERR4816470 | Other | lineage3 | None | ERR216964 | Sensitive | lineage4.3.4.2.1 | mw | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR228180 | Sensitive | lineage3 | None | ERR4816800 | Other | lineage4.8 | gb | SRR4033549 | HR-TB | lineage2.2.2 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR228175 | Sensitive | lineage3 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4819041 | Sensitive | lineage4.3.3 | gb | ERR4817915 | RR-TB | lineage4.9 | None | ERR2513398 | Other | lineage4.2.1 | gb | ERR2513405 | Other | lineage2.2.1 | None | ERR4818179 | Other | lineage4.1.1 | None | ERR4818561 | HR-TB | lineage4 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818440 | Other | lineage6.3.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818283 | Sensitive | lineage4.5 | gb | ERR4818583 | Other | lineage4.3.3 | None | ERR4817628 | Sensitive | lineage4.8 | gb | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819910 | Other | lineage4.9 | None | ERR4820494 | Sensitive | lineage4.9 | None | ERR1023509 | Other | None | ERR4820608 | Sensitive | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | ERR4820829 | Other | lineage4.8 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR4821057 | HR-TB | lineage4 | None | SRR5535933 | HR-TB | None | SRR5520603 | Sensitive | lineage4.9 | pg | ERR4821143 | RR-TB | lineage4.9 | None | ERR4822150 | Other | lineage4.8 | gb | ERR4821318 | HR-TB | lineage4.6.2.2 | gb | ERR4821276 | Other | lineage3 | None | SRR6046141 | Other | lineage4.9 | None | SRR5818683 | Sensitive | lineage3.1.1 | dj | SRR6045832 | HR-TB | lineage4.9 | None | SRR6046046 | Other | None | SRR6045053 | Other | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6046225 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR4828388 | HR-TB | lineage1.1.1 | None | ERR2843451 | HR-TB | lineage1.1.1 | None | ERR4829365 | HR-TB | lineage4.1.2.1 | it | ERR4830670 | Sensitive | lineage4.1.2 | dz | ERR4829746 | Sensitive | lineage4.8 | it | ERR4828806 | Other | lineage4.1.4 | None | SRR6397640 | Other | lineage4.2.1.1 | None | SRR6046839 | Other | lineage4.9 | None | ERR502490 | Sensitive | lineage4.9 | None | ERR502482 | Sensitive | lineage4.9 | None | ERR502483 | Sensitive | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR502472 | Other | lineage4.6.2.2 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR502484 | Sensitive | lineage4.9 | None | ERR502485 | Sensitive | lineage4.9 | None | ERR502486 | Sensitive | lineage4.9 | None | ERR502489 | Sensitive | lineage4.9 | None | ERR502492 | Sensitive | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | ERR502493 | Sensitive | lineage4.9 | None | ERR502498 | Sensitive | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR502497 | Sensitive | lineage4.9 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | ERR502523 | Other | lineage6.3.1 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR5087596 | Other | La1.8.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7131296 | Other | lineage4.3.3 | None | SRR7496471 | Sensitive | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7496523 | Other | lineage4.7 | None | SRR7585435 | Other | lineage4.9 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | DRR188519 | Other | lineage4.4.2 | None | ERR067712 | HR-TB | lineage4 | None | ERR036207 | Other | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4769408 | Other | La1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769450 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769548 | Other | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796907 | MDR-TB | lineage4.3.3 | in | ERR4797333 | Pre-XDR-TB | lineage4.3.3 | in | ERR4797353 | MDR-TB | lineage4.3.3 | in | ERR4799228 | Pre-XDR-TB | lineage4.3.3 | in | ERR4798823 | HR-TB | lineage4 | None | ERR4799100 | RR-TB | lineage4.3.3 | in | ERR4798198 | Pre-XDR-TB | lineage4.3.3 | in | ERR4799025 | Pre-XDR-TB | None | ERR4799466 | Sensitive | lineage4.3.3 | in | ERR4799513 | HR-TB | lineage2.2 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR4799593 | Sensitive | lineage4.3.3 | in | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR6359070 | Other | lineage4.9 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR11050008 | Sensitive | lineage4.3.3 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | ERR751338 | Other | lineage5.1.1 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786705 | Sensitive | lineage4.1.2.1 | None | ERR9787336 | Other | lineage6 | None | ERR987695 | HR-TB | lineage4.3.4.2 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049630 | MDR-TB | lineage4.4.1.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049744 | Sensitive | lineage4.6.1 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049752 | RR-TB | lineage4.6.1.2 | None | SRR1049751 | RR-TB | lineage4.6.1.2 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1140586 | HR-TB | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1180440 | Other | lineage4.9 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173740 | Other | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181368 | Other | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR13180204 | Sensitive | lineage3 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972438 | HR-TB | lineage1.1.1 | None | SRR11972449 | MDR-TB | lineage2.2 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None |
|---|
