EBG00000313339 - n.544T>C


Drug resistance types
75 Sensitive 25 RR-TB 46 HR-TB 43 MDR-TB 21 Pre-XDR-TB 0 XDR-TB 85 Other
lineage Counts
lineage Count
lineage4.1.1.3 5
lineage4;lineage2 1
lineage4.6.1.2 8
lineage4.9 94
lineage2.2.2 2
lineage4.8 7
lineage4 15
lineage3 11
lineage4.1.1 1
lineage2.2.1 30
lineage6.3.1 2
lineage4.3.3 14
15
lineage1.1.1 3
lineage4.1.4 1
lineage4.2.1.1 2
lineage4.6.2.2 2
lineage4.1 1
La1.8.1 5
lineage4.7 3
lineage4.2.1 4
lineage4.1.2.1 8
lineage4.3.4.2.1 3
lineage4.8.1 1
lineage4.3.4.1 1
lineage4.4.2 3
lineage4.6.1.1 2
La1.7.X-unk4 1
lineage4.4.1.2 1
La1.3 7
lineage4.9;La1.3 1
lineage2.2 7
lineage4.5;lineage2.2.1 1
lineage5.1.1 3
lineage4.3.2 1
lineage4.6.5 1
lineage4.9.1 1
lineage6 1
lineage4.3.4.2 1
lineage4.4.1.1 2
lineage4.8;lineage4.3.3 4
lineage4.6.1 1
lineage4.4.1.1.1 2
lineage4.3.2.1 1
lineage2.2.1.2 2
lineage4.9;lineage2.2 1
lineage2 1
lineage3.1.1 1
lineage4.2.2.1 1
La2 1
lineage4.4 1
lineage3.1.3 1
La1.7.1 3
lineage4.1.1.2 1
lineage1.2.2.2 1
lineage4.5 1
spoligotype Counts
spoligotype Count
None 295
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4816755 Other lineage4.1.1.3 None
ERR4816762 Other lineage4;lineage2 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
ERR4818710 Sensitive lineage4.9 None
SRR4033549 HR-TB lineage2.2.2 None
ERR4817667 HR-TB lineage4.8 None
ERR4815815 Sensitive lineage4 None
ERR228180 Sensitive lineage3 None
ERR228175 Sensitive lineage3 None
ERR3275709 HR-TB lineage3 nl
ERR4817915 RR-TB lineage4.9 None
ERR4818179 Other lineage4.1.1 None
ERR2513229 MDR-TB lineage2.2.1 None
ERR4818440 Other lineage6.3.1 None
ERR2513405 Other lineage2.2.1 None
ERR4818536 Other lineage4.9 None
ERR4818561 HR-TB lineage4 None
ERR4819357 Other lineage4.9 None
ERR4818583 Other lineage4.3.3 None
SRR5153091 HR-TB lineage4.3.3 None
ERR4819910 Other lineage4.9 None
ERR4819462 Other lineage4 None
ERR4819546 HR-TB lineage3 None
ERR4820494 Sensitive lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
ERR4819933 Other lineage4.9 None
ERR1023509 Other None
SRR5341330 HR-TB None
ERR4820829 Other lineage4.8 None
ERR4820608 Sensitive lineage4.9 None
ERR6359082 Other lineage4.9 None
ERR4821057 HR-TB lineage4 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR6045359 Sensitive lineage4.9 None
ERR4821143 RR-TB lineage4.9 None
SRR5535933 HR-TB None
ERR2660539 Other lineage4.9 None
SRR6045832 HR-TB lineage4.9 None
SRR6045217 Other lineage4 None
ERR4821276 Other lineage3 None
SRR6046141 Other lineage4.9 None
SRR6045053 Other None
SRR6045191 Sensitive lineage4.9 None
SRR6046046 Other None
ERR4799100 RR-TB lineage4.3.3 in
SRR6046225 HR-TB None
SRR6046376 Other lineage3 None
ERR2843451 HR-TB lineage1.1.1 None
ERR4828388 HR-TB lineage1.1.1 None
ERR4798198 Pre-XDR-TB lineage4.3.3 in
ERR4796907 MDR-TB lineage4.3.3 in
ERR4828806 Other lineage4.1.4 None
ERR4799228 Pre-XDR-TB lineage4.3.3 in
SRR6046839 Other lineage4.9 None
ERR4797353 MDR-TB lineage4.3.3 in
SRR6397640 Other lineage4.2.1.1 None
ERR4799466 Sensitive lineage4.3.3 in
ERR4799593 Sensitive lineage4.3.3 in
ERR502485 Sensitive lineage4.9 None
ERR502482 Sensitive lineage4.9 None
ERR323037 HR-TB lineage4 None
ERR502472 Other lineage4.6.2.2 None
ERR485006 HR-TB lineage4.9 None
ERR502483 Sensitive lineage4.9 None
ERR502484 Sensitive lineage4.9 None
ERR502489 Sensitive lineage4.9 None
ERR502486 Sensitive lineage4.9 None
ERR502492 Sensitive lineage4.9 None
ERR502490 Sensitive lineage4.9 None
ERR502493 Sensitive lineage4.9 None
SRR6982141 RR-TB lineage4.3.3 None
ERR502498 Sensitive lineage4.9 None
ERR502497 Sensitive lineage4.9 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
SRR6785281 Other lineage4.2.1.1 None
ERR502523 Other lineage6.3.1 None
SRR6789624 MDR-TB lineage4.1 None
SRR6855695 Sensitive lineage4.8 None
ERR5311077 RR-TB La1.8.1 None
ERR5087596 Other La1.8.1 None
SRR9971270 RR-TB lineage2.2.1 None
SRR7496523 Other lineage4.7 None
SRR7131296 Other lineage4.3.3 None
SRR7496471 Sensitive None
SRR7585435 Other lineage4.9 None
SRR9971333 MDR-TB lineage4.1.1.3 None
SRR7645901 MDR-TB lineage2.2.1 None
SRR7645899 RR-TB lineage2.2.1 None
SRR7645928 RR-TB lineage4.7 None
SRR7645906 Other lineage2.2.1 None
SRR7645927 Other lineage4.8 None
SRR7645971 Other lineage2.2.1 None
SRR7646018 MDR-TB lineage4.2.1 None
SRR7645972 MDR-TB lineage4.2.1 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
SRR9971080 RR-TB lineage2.2.1 None
SRR7755657 Other lineage4.8 None
SRR7755649 MDR-TB lineage4.2.1 None
SRR7755655 Other lineage4.1.2.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR9971122 MDR-TB lineage4.8 None
SRR9971150 RR-TB lineage4.8.1 None
SRR7755688 Pre-XDR-TB lineage4.2.1 None
SRR7765062 Pre-XDR-TB lineage4.1.2.1 None
ERR036207 Other lineage4.9 None
ERR323048 Pre-XDR-TB lineage4.9 None
ERR11466514 Sensitive lineage4.3.4.1 None
DRR188519 Other lineage4.4.2 None
ERR10762495 MDR-TB lineage2.2.1 None
ERR1034647 MDR-TB lineage4.1.1.3 None
ERR067712 HR-TB lineage4 None
ERR1023502 MDR-TB lineage2.2.1 None
ERR108125 Pre-XDR-TB lineage4.9 None
ERR1199132 Sensitive lineage4.6.1.1 None
ERR3445487 Other La1.7.X-unk4 None
ERR126597 MDR-TB lineage4.4.1.2 None
ERR4769436 Other La1.3 None
ERR473303 Sensitive lineage4.9 None
ERR473334 HR-TB lineage4.9 None
ERR473367 Sensitive lineage4.9 None
ERR4769408 Other La1.3 None
ERR3468488 RR-TB La1.8.1 None
ERR4596910 Sensitive lineage4 None
ERR473323 HR-TB lineage4.9 None
ERR4769444 HR-TB lineage4.9 None
ERR4769442 HR-TB lineage4 None
ERR4769452 HR-TB None
ERR4769457 Other lineage4.9 None
ERR4769514 Other La1.3 None
ERR4769450 HR-TB None
ERR4769506 Sensitive La1.3 None
ERR4769508 RR-TB lineage4.9 None
ERR4769516 Other La1.3 None
ERR4769530 RR-TB lineage4.9 None
ERR4769548 Other lineage4.9 None
ERR4769550 Other lineage4.9;La1.3 None
ERR4769552 Other La1.3 None
ERR4796472 Pre-XDR-TB lineage2.2.1 None
ERR4769555 Other La1.3 None
ERR4799513 HR-TB lineage2.2 None
ERR4798823 HR-TB lineage4 None
ERR4796577 MDR-TB None
ERR4799025 Pre-XDR-TB None
ERR4809333 Pre-XDR-TB lineage2.2.2 None
ERR4808964 RR-TB lineage2.2.1 None
ERR5987263 MDR-TB lineage2.2.1 None
ERR4811035 Pre-XDR-TB lineage4.5;lineage2.2.1 None
ERR751330 MDR-TB lineage5.1.1 None
ERR6359074 HR-TB lineage4.9 None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR6358951 HR-TB lineage4 None
ERR6359070 Other lineage4.9 None
ERR6359069 Other lineage4.9 None
ERR6866241 Other lineage4.3.2 None
ERR736831 HR-TB lineage4.9 None
ERR736837 Other lineage4.9 None
ERR751338 Other lineage5.1.1 None
ERR11050008 Sensitive lineage4.3.3 None
ERR751345 Other lineage5.1.1 None
ERR7801176 RR-TB lineage4.6.5 None
ERR037504 Other lineage4.9.1 None
ERR970449 RR-TB lineage4.1.1.3 None
ERR212114 Other lineage4.3.4.2.1 None
ERR9119733 MDR-TB lineage2.2.1 None
ERR9786705 Sensitive lineage4.1.2.1 None
ERR9786076 Sensitive lineage3 None
ERR9787336 Other lineage6 None
ERR987707 MDR-TB lineage4.7 None
ERR987695 HR-TB lineage4.3.4.2 None
SRR10315551 Sensitive lineage2.2.1 None
ERR987765 Sensitive lineage4.6.1.1 None
SRR10315751 MDR-TB lineage4.8 None
SRR1049581 MDR-TB lineage4.6.1.2 None
SRR1049582 MDR-TB lineage4.6.1.2 None
SRR1049675 HR-TB lineage2.2.1 None
SRR1049630 MDR-TB lineage4.4.1.1 None
SRR1049677 MDR-TB lineage4.8;lineage4.3.3 None
SRR1049674 HR-TB lineage2.2.1 None
SRR1049676 MDR-TB lineage4.8;lineage4.3.3 None
SRR1049751 RR-TB lineage4.6.1.2 None
SRR1049744 Sensitive lineage4.6.1 None
SRR1062880 MDR-TB lineage4.6.1.2 None
SRR1049752 RR-TB lineage4.6.1.2 None
SRR1062919 HR-TB lineage2.2.1 None
SRR1062920 MDR-TB lineage4.8;lineage4.3.3 None
SRR1140712 MDR-TB lineage4.6.1.2 None
SRR10869071 MDR-TB lineage2.2.1 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
SRR1140574 MDR-TB lineage4.8;lineage4.3.3 None
SRR1140586 HR-TB lineage4.9 None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR1172807 Sensitive lineage4.9 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR1140724 HR-TB lineage2.2.1 None
SRR11462861 Other La1.8.1 None
SRR1172717 Other lineage4.9 None
SRR1173185 HR-TB lineage4.9 None
SRR1172885 HR-TB lineage4.9 None
SRR1173281 RR-TB lineage3 None
SRR1173450 RR-TB lineage4.9 None
SRR1175127 Sensitive lineage2.2.1.2 None
SRR1173687 Pre-XDR-TB lineage2.2.1 None
SRR1173740 Other None
SRR1175052 HR-TB lineage4.9 None
SRR1175473 Other lineage4.9 None
SRR1175474 HR-TB lineage4.9 None
SRR1175491 MDR-TB lineage4 None
SRR1175472 MDR-TB lineage4 None
SRR1175512 Sensitive lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
SRR1175513 Other lineage4.9 None
SRR1180148 Sensitive lineage4.9 None
SRR1180250 Other lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR1180406 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9;lineage2.2 None
SRR1180446 Other lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR1180440 Other lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
SRR1181214 Other lineage4.9 None
SRR1181237 Sensitive lineage2.2 None
SRR1181325 Sensitive lineage4.9 None
SRR1181283 Sensitive lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
SRR1181390 Sensitive lineage2 None
SRR1181349 Sensitive lineage4.4.1.1.1 None
SRR1181351 Sensitive lineage4.9 None
SRR1181368 Other lineage4.9 None
SRR11972449 MDR-TB lineage2.2 None
SRR1184329 MDR-TB lineage4.9 None
SRR1196478 MDR-TB lineage4.9 None
SRR11972417 MDR-TB lineage2.2.1 None
SRR11972438 HR-TB lineage1.1.1 None
SRR1183054 Sensitive lineage4.9 None
SRR1184021 Sensitive lineage4.9 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR13180204 Sensitive lineage3 None
SRR12634609 MDR-TB lineage3.1.1 None
SRR13180363 Sensitive lineage4.1.2.1 None
SRR13423546 Other lineage4.4.2 None
SRR16149133 MDR-TB lineage4.2.2.1 None
SRR13888750 Other La2 None
SRR14782405 HR-TB None
SRR13591342 HR-TB lineage4.1.1.3 None
SRR16157123 Other lineage4.9 None
SRR1792011 Other La1.8.1 None
SRR16370416 MDR-TB lineage4.3.3 None
SRR16627752 RR-TB lineage4.4 None
SRR18002901 MDR-TB lineage2.2.1 None
SRR18913742 Sensitive lineage3.1.3 None
SRR18912069 Other lineage4.1.2.1 None
SRR20969731 Other lineage2.2.1 None
SRR20632814 Sensitive lineage4 None
SRR20969542 Other lineage4.4.2 None
SRR20969708 HR-TB lineage2.2 None
SRR20970016 Other lineage2.2 None
SRR21469202 Other La1.7.1 None
SRR21469200 Other La1.7.1 None
SRR21469201 Other La1.7.1 None
SRR21677886 Sensitive lineage4.9 None
SRR22424851 MDR-TB lineage4.3.3 None
SRR21686597 Sensitive lineage4.1.2.1 None
SRR22424787 Sensitive lineage4.9 None
ERR4815121 HR-TB lineage4.6.2.2 None
ERR176771 Sensitive None
SRR3601585 Pre-XDR-TB lineage2.2 None
ERR1750889 Other lineage4.4.1.1 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
SRR3619764 Pre-XDR-TB lineage2.2 None
ERR4814639 HR-TB lineage4 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
ERR4815471 Other lineage4.9 None
ERR1750909 RR-TB lineage4.1.1.2 None
SRR3675270 HR-TB None
ERR4814963 Other lineage4.1.2.1 None
ERR4815517 Other lineage1.2.2.2 None
ERR4816470 Other lineage3 None
ERR4816964 Other lineage4.9 None
ERR4816991 Sensitive lineage4.9 None
SAMN02381051 RR-TB lineage4.6.1.2 None
ERR216965 HR-TB lineage4.9 None
ERR4816548 MDR-TB lineage4.5 None
ERR216978 Sensitive lineage4.3.4.2.1 None
ERR4817204 RR-TB lineage4.9 None