EBG00000313339 - n.544T>C
Drug resistance types
69 Sensitive
16 RR-TB
36 HR-TB
34 MDR-TB
18 Pre-XDR-TB
0 XDR-TB
74 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 97 |
| lineage3.1.1 | 1 |
| lineage4.1.1.3 | 6 |
| lineage2.2.1 | 32 |
| lineage3 | 5 |
| lineage4.2.1 | 4 |
| lineage4.1.2.1 | 6 |
| lineage3;lineage4 | 1 |
| lineage4.3.3 | 17 |
| lineage2.2.1.2 | 2 |
| La1.8.1 | 3 |
| lineage4.6.1.2 | 7 |
| La1;lineage4.9 | 1 |
| lineage4.7 | 3 |
| lineage4.3.2.1 | 2 |
| lineage2.2.1;lineage4.9 | 3 |
| 2 | |
| lineage4.3.3;lineage4.8 | 4 |
| lineage4.3.4.1 | 3 |
| lineage2.2.2 | 2 |
| lineage4.3;lineage4.9 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage4.4.2 | 3 |
| lineage5.1.1 | 2 |
| lineage4.8 | 6 |
| lineage1.2.2.2 | 1 |
| lineage6 | 1 |
| lineage4 | 2 |
| lineage4.4 | 1 |
| lineage4.8.1 | 1 |
| lineage4.2.1.1 | 2 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.3 | 3 |
| lineage6.3.1 | 1 |
| lineage4.4.1.1.1 | 2 |
| La2 | 1 |
| La1.7.1 | 2 |
| lineage2.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4.6.5 | 1 |
| lineage4.9.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.5 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.6.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 247 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4596910 | Sensitive | lineage4.9 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR1023509 | Other | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR7240033 | Other | La1.8.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR4769452 | Other | lineage4.9 | None | SRR1173185 | Other | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR7645971 | Other | lineage2.2.1 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1049752 | RR-TB | lineage4.6.1.2 | None | SRR1175474 | Other | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | ERR4799593 | Sensitive | lineage4.3.3 | in | ERR4796577 | HR-TB | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR11466514 | Sensitive | lineage4.3.4.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4799100 | RR-TB | lineage4.3.3 | in | SRR1180345 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | DRR188519 | Other | lineage4.4.2 | None | ERR4799228 | Pre-XDR-TB | lineage4.3.3 | in | ERR751345 | Other | lineage5.1.1 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | SRR1181349 | Sensitive | lineage4 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR5311077 | Other | La1.8.1 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR6397640 | Other | lineage4.2.1.1 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184329 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR4798198 | Pre-XDR-TB | lineage4.3.3 | in | ERR323048 | Sensitive | lineage4.9 | None | SRR1196478 | Other | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR1181368 | Other | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1049735 | Sensitive | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR1181214 | Other | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR4769408 | Other | La1.3 | None | ERR176741 | Other | lineage4.9 | None | ERR4797353 | MDR-TB | lineage4.3.3 | in | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR11050008 | Sensitive | lineage4.3.3 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR6982141 | Other | lineage4.3.3 | None | ERR4769457 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR502523 | Other | lineage6.3.1 | None | SRR7496471 | Sensitive | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR13888750 | Other | La2 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1792011 | Other | La1.8.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR21469202 | Other | La1.7.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR13261489 | Pre-XDR-TB | lineage4.3.3 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4769516 | Sensitive | lineage4.9 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR1180446 | Other | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR29053036 | MDR-TB | lineage4.3.3 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1173450 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR16370416 | MDR-TB | lineage4.3.3 | None | ERR6359082 | Other | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR4769514 | Other | La1.3 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | ERR4818536 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4799466 | Sensitive | lineage4.3.3 | in | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR18912069 | Other | lineage4.1.2.1 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1180440 | Other | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR29231074 | Other | lineage4.3.3 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4796907 | MDR-TB | lineage4.3.3 | in | ERR4799025 | Other | lineage4.8 | None | SRR7645927 | Other | lineage4.8 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR037504 | Other | lineage4.9.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR4818561 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR4769436 | Other | La1.3 | None | SRR1049630 | MDR-TB | lineage4.4.1.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR751338 | Other | lineage5.1.1 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9786076 | Sensitive | lineage3 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR323037 | Other | lineage4.9 | None |
|---|
