EBG00000313339 - n.1226T>C


Drug resistance types
19 Sensitive 30 RR-TB 35 HR-TB 40 MDR-TB 29 Pre-XDR-TB 0 XDR-TB 220 Other
lineage Counts
lineage Count
lineage4.4.1.2 1
lineage4.4.1.1 12
lineage2.2.1 69
lineage2.2.2;lineage2.2.1 1
lineage2.2.2 14
lineage4.4.2 3
lineage4.2.2 1
lineage4.5 3
lineage4.1.2.1 26
lineage4.2.1 2
lineage3 20
lineage4.3.3 11
lineage4.8 22
lineage4.6.2.2 8
lineage4.3.4.2 5
lineage1.2.1.2.1 1
lineage6 1
lineage6.1.1 1
lineage1.1.3.1 5
lineage4.9 43
lineage2.2.1.1 4
lineage1.1.2 4
lineage4.9;lineage3.1.1 1
lineage2.2.1.2 1
lineage4 14
lineage1.2.2.2 4
lineage4.6.1.1 2
lineage4.2 1
lineage3.1.3 2
lineage1.2.1.1 1
lineage3.1 3
lineage4.2.2.2 5
lineage4.6.1.2 1
lineage4.1.2 6
lineage1.1.1 1
lineage4.2.1.1 1
lineage4.8.1 1
lineage6.3.1 1
lineage1.1.3 1
lineage4;lineage3 1
lineage4.1.1.3.1 4
lineage4.3.4.2.1 2
11
lineage4.3.1.1 3
lineage4.1.1.3 6
lineage3.1.1 3
lineage4.7 3
lineage5 1
lineage4.4 1
lineage3.1.2.2 3
lineage4.2.2.2;lineage3 1
lineage4.8.2 1
lineage3.1.2 2
lineage1.1.3.3 1
lineage4.6.5 1
lineage4.3.4.1 6
lineage4.4.1.1.1 1
lineage4.9;lineage1.1 1
lineage4.3.2 2
lineage4.9;lineage4.1 1
lineage4.9;lineage4.3.4 1
lineage4.3 1
lineage4.1.1 1
lineage4.3.4 1
lineage5.1.1 1
lineage2.2 8
lineage4;lineage2.2.2 1
lineage4.9;lineage2 1
spoligotype Counts
spoligotype Count
None 373
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR17567887 Sensitive lineage4.4.1.2 None
SRR17567930 Other lineage4.4.1.1 None
SRR18002874 MDR-TB lineage2.2.1 None
SRR18002876 MDR-TB lineage2.2.2;lineage2.2.1 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR18002875 MDR-TB lineage2.2.2 None
SRR18002930 MDR-TB lineage2.2.1 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR18002891 MDR-TB lineage2.2.1 None
SRR18002901 MDR-TB lineage2.2.1 None
SRR18002907 MDR-TB lineage2.2.1 None
SRR18002937 Other lineage2.2.1 None
SRR18002935 Pre-XDR-TB lineage2.2.1 None
SRR18002945 RR-TB lineage2.2.1 None
SRR18002941 RR-TB lineage2.2.1 None
SRR18002963 Other lineage2.2.1 None
SRR18002954 Other lineage2.2.1 None
SRR18002949 Sensitive lineage2.2.1 None
SRR18002956 HR-TB lineage2.2.1 None
SRR18002974 Pre-XDR-TB lineage2.2.1 None
SRR18002967 Pre-XDR-TB lineage2.2.1 None
SRR18002964 Other lineage2.2.1 None
SRR18002976 Other lineage2.2.1 None
SRR18002984 MDR-TB lineage2.2.2 None
SRR18002980 Other lineage2.2.1 None
SRR18002981 Other lineage2.2.1 None
SRR18002985 HR-TB lineage2.2.1 None
SRR18002995 Other lineage4.4.2 None
SRR18002994 MDR-TB lineage4.2.2 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR18002999 Pre-XDR-TB lineage2.2.1 None
SRR18002997 Other lineage2.2.1 None
SRR18003009 MDR-TB lineage2.2.1 None
SRR18003007 MDR-TB lineage4.5 None
SRR18003002 MDR-TB lineage2.2.1 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR18003013 Pre-XDR-TB lineage4.4.2 None
SRR18003024 RR-TB lineage2.2.1 None
SRR18003012 Pre-XDR-TB lineage2.2.1 None
SRR18003023 Other lineage2.2.1 None
SRR18003045 Other lineage2.2.1 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR18003038 Other lineage2.2.1 None
SRR18003042 Other lineage2.2.1 None
SRR18003015 MDR-TB lineage2.2.1 None
SRR18003027 Other lineage2.2.1 None
SRR18003032 Other lineage2.2.1 None
SRR18003049 Other lineage2.2.1 None
SRR18911555 Other lineage4.1.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR18003044 MDR-TB lineage2.2.1 None
SRR18003046 MDR-TB lineage2.2.1 None
SRR18912991 Sensitive lineage2.2.1 None
SRR19303784 Other lineage4.2.1 None
SRR18913779 Other lineage3 None
SRR19303775 Other lineage3 None
SRR19303796 Other lineage4.3.3 None
SRR19303788 Sensitive lineage4.8 None
SRR19303805 Other lineage4.8 None
SRR19303798 Sensitive lineage4.4.1.1 None
SRR19303819 Other lineage4.6.2.2 None
SRR19303815 Other lineage4.8 None
SRR19303820 RR-TB lineage4.8 None
SRR19303818 Other lineage4.3.4.2 None
SRR19303817 Other lineage2.2.1 None
SRR19303899 Other lineage3 None
SRR19303907 Other lineage4.8 None
SRR19303917 Other lineage2.2.1 None
SRR19304035 Other lineage4.1.2.1 None
SRR19303949 Other lineage4.3.3 None
SRR19303985 Other lineage4.8 None
SRR19304114 Other lineage1.2.1.2.1 None
SRR19304083 Other lineage4.4.1.1 None
SRR19304094 Other lineage6 None
SRR19304104 Other lineage4.8 None
SRR22048474 RR-TB lineage4.8 None
SRR19304115 Other lineage4.1.2.1 None
SRR21727760 Other lineage2.2.1 None
SRR21658552 Other lineage6.1.1 None
SRR21728165 Other lineage1.1.3.1 None
ERR4815121 HR-TB lineage4.6.2.2 None
SRR22424905 RR-TB lineage4.9 None
SRR22424778 RR-TB lineage2.2.1.1 None
ERR4814617 Other lineage1.1.3.1 None
ERR4815171 HR-TB lineage1.1.2 None
ERR4815301 Other lineage4.4.2 None
SAMN02360583 HR-TB lineage2.2.2 None
ERR4815777 Other lineage4.9 None
ERR4814697 Sensitive lineage4.4.1.1 None
ERR4814763 Other lineage2.2.1 None
ERR171142 Other lineage4.9;lineage3.1.1 None
ERR4814748 Other lineage4.8 None
ERR4814700 Other lineage4.3.3 None
SRR3675227 Other lineage4.9 None
SRR3675225 Other lineage2.2.1.2 None
SRR3675252 RR-TB lineage1.1.2 None
ERR4814911 Other lineage4.3.3 None
SRR3675265 Other lineage4 None
ERR4815517 Other lineage1.2.2.2 None
ERR2446456 HR-TB lineage4.4.1.1 None
SAMN02381005 Other lineage4.6.1.1 None
SRR3675509 Other lineage4.9 None
ERR4816043 Other lineage4.2 None
SRR3675513 Other lineage4.8 None
ERR2027232 Other lineage4.3.4.2 None
ERR2027220 Other lineage3.1.3 None
ERR2027207 Sensitive lineage3 None
ERR2027209 MDR-TB lineage1.2.1.1 None
SRR3675538 Other lineage4.8 None
ERR4817055 Other lineage4.1.2.1 None
ERR2027257 Other lineage4.1.2.1 None
ERR2027255 HR-TB lineage4.4.1.1 None
ERR2027285 MDR-TB lineage4.6.2.2 None
ERR2027290 RR-TB lineage3.1 None
ERR2027230 Other lineage4.2.2.2 None
SAMN02360556 Pre-XDR-TB lineage2.2.2 None
ERR2027297 RR-TB lineage4.8 None
ERR4816227 RR-TB lineage3 None
ERR4816231 Other lineage4 None
ERR4816310 HR-TB lineage4.6.1.2 None
ERR4816493 Other lineage4.1.2.1 None
ERR4816429 Other lineage1.1.2 None
ERR4816464 Other lineage3 None
ERR4817294 Other lineage4.1.2 None
SRR4034391 MDR-TB lineage4.1.2.1 None
ERR4816531 Other lineage4.1.2 None
ERR4817273 Other lineage1.2.2.2 None
ERR4816866 Other lineage2.2.1 None
ERR4816882 Other lineage4.8 None
ERR4818655 Other lineage4.3.3 None
ERR4817703 Other lineage1.1.1 None
ERR4815811 HR-TB lineage4.2.1.1 None
ERR4819007 Other lineage2.2.1 None
SAMN02360595 Pre-XDR-TB lineage2.2.2 None
ERR4817826 RR-TB lineage4.5 None
ERR4817853 Other lineage4.8.1 None
ERR4818726 Other lineage4.1.2.1 None
ERR4817958 Other lineage4.2.1 None
SAMN02398710 MDR-TB lineage2.2.2 None
SAMN02360570 Pre-XDR-TB lineage2.2.1 None
SAMN02360574 HR-TB lineage2.2.1 None
SAMN02360591 Pre-XDR-TB lineage2.2.2 None
ERR4818797 Other lineage4.5 None
ERR4818128 RR-TB lineage4.1.2.1 None
ERR4819017 RR-TB lineage3 None
ERR4818176 Other lineage4.1.2.1 None
SAMN02360580 HR-TB lineage2.2.1 None
ERR4818440 Other lineage6.3.1 None
ERR4818351 Other lineage1.1.3 None
SRR5007163 MDR-TB lineage4;lineage3 None
ERR4818471 Other lineage2.2.1 None
SRR5007167 RR-TB lineage4.1.1.3.1 None
SRR5007193 RR-TB lineage4.1.1.3.1 None
SRR5007204 Other lineage4.1.2.1 None
ERR4819198 Other lineage2.2.1 None
ERR4819096 Other lineage4.4.1.1 None
ERR4819192 Other lineage3 None
ERR4819910 Other lineage4.9 None
ERR4819423 Other lineage4.6.2.2 None
ERR4819491 Other lineage4.1.2.1 None
ERR4819622 Other lineage4.1.2.1 None
ERR4819772 RR-TB lineage1.1.3.1 None
ERR4819242 HR-TB lineage4.6.2.2 None
ERR4819641 HR-TB lineage4.6.2.2 None
ERR4820492 Other lineage2.2.1 None
ERR4820827 Other lineage4.1.2 None
ERR4820829 Other lineage4.8 None
ERR4819948 Other lineage4.4.1.1 None
ERR4820075 Other lineage4.1.2.1 None
ERR2515032 Other lineage3 None
ERR4820019 Other lineage4.3.4.2.1 None
ERR4820959 Other lineage4.1.2.1 None
SRR6046087 Other None
SRR6045422 Other lineage4.3.1.1 None
SRR6045464 Other lineage4.1.1.3 None
ERR4821054 Other lineage3 None
SRR6045516 Other lineage3.1.1 None
SAMN02360579 HR-TB lineage2.2.1.1 None
ERR4821119 Other lineage4.4.1.1 None
ERR4821908 Other lineage4.8 None
SRR6045553 RR-TB lineage4.9 None
SRR6046117 RR-TB lineage4.9 None
ERR4821372 Other lineage4.1.2.1 None
ERR4821288 Other lineage4.7 None
ERR4821310 Other lineage5 None
SRR6045591 Other lineage4.1.2.1 None
ERR4821417 Other lineage1.1.3.1 None
SRR6045565 Other lineage4.6.2.2 None
SRR6045603 RR-TB lineage4.1.1.3 None
SRR6045705 Other lineage4.9 None
SRR6045613 Other lineage3.1.3 None
SRR6045621 Other lineage4.1.1.3 None
SRR6045655 Other lineage4.1.1.3.1 None
SRR5818586 RR-TB lineage4.2.2.2 None
SRR6046210 Other lineage4 None
SRR6045778 Other lineage3.1 None
SRR6045763 Pre-XDR-TB lineage2.2.1 None
SRR6046152 Other lineage4.9 None
SRR5818630 Other lineage2.2.1 None
SRR6045805 Other lineage4.3.1.1 None
SRR5818647 RR-TB lineage4.3.4.2.1 None
SRR6045159 Other lineage3.1.1 None
SRR5818684 Other lineage4.2.2.2 None
SRR6044769 Other lineage1.1.2 None
SRR6044787 Other lineage4.4 None
SRR6045909 Other lineage4.8 None
SRR6044873 Other lineage4.1.1.3.1 None
SRR6044993 Other lineage3 None
SRR6045017 Other lineage3.1.2.2 None
SRR6045986 Other lineage3 None
SRR5818694 RR-TB lineage4.2.2.2;lineage3 None
SRR6045843 Other lineage4.2.2.2 None
SRR6044774 Other lineage3 None
SRR6044841 Other lineage4.9 None
SRR6045910 Other lineage3.1 None
SRR6045928 Other lineage4.9 None
SRR6045944 Other lineage4.1.2.1 None
SRR6046159 Other lineage4.8.2 None
SRR6046177 Other lineage3.1.2 None
SRR6046246 Other lineage3 None
SRR6046020 Other lineage3 None
SRR6045178 Other lineage3 None
SRR6045295 Other lineage4.7 None
SRR6045312 Other lineage1.1.3.3 None
SRR6045321 Other lineage1.1.3.1 None
SRR6045327 HR-TB None
SRR6045358 Sensitive lineage4.9 None
SRR6045384 Other lineage4.1.2 None
SRR6046273 Other lineage3.1.2 None
SRR6046275 Other lineage3.1.1 None
SRR6046343 Other lineage2.2.1 None
SRR6046359 Other lineage4.7 None
ERR2851354 RR-TB lineage4.9 None
ERR4829208 RR-TB lineage4.8 None
ERR4830549 MDR-TB lineage4.1.1.3 None
SRR6046442 Other lineage3 None
SRR6046440 Other lineage3.1.2.2 None
SRR6046484 Other lineage1.2.2.2 None
SRR6046482 HR-TB None
SRR6046802 Other lineage4 None
SRR6046729 Other None
SRR6046497 Other lineage4.9 None
SRR6046655 Other lineage4.1.2.1 None
SRR6046701 Other lineage3.1.2.2 None
SRR6046733 Pre-XDR-TB lineage2.2.1 None
SRR6046834 Sensitive lineage4.9 None
SRR6046848 Other lineage4.6.5 None
SRR7131032 Other lineage2.2.1 None
ERR2984789 Pre-XDR-TB lineage4.3.4.1 None
ERR2984800 Pre-XDR-TB lineage4.3.4.1 None
SRR7131004 Other lineage4.6.2.2 None
SRR6046852 MDR-TB lineage3 None
SRR7131147 Other lineage4.1.2.1 None
SRR7131097 Sensitive lineage2.2.1 None
SRR7131123 Other lineage4.8 None
SRR7131068 Other lineage4.8 None
SRR7131075 Other lineage4.8 None
SRR7131094 Other lineage4.3.3 None
SRR7131121 Other lineage4.3.3 None
SRR7131145 Other lineage4.1.2.1 None
SRR7131149 Pre-XDR-TB lineage4.8 None
SRR7131182 Other lineage4.1.2.1 None
SRR7131195 Other lineage2.2.1 None
SRR7131229 Other lineage4.1.2.1 None
SRR7131196 Other lineage4.8 None
SRR7131198 Other lineage4.3.3 None
SRR7131216 Other lineage4.1.2.1 None
SRR7131230 HR-TB lineage4.3.4.2 None
SRR7131236 Other lineage4.3.4.2 None
SRR7131234 Other lineage4.9 None
ERR10796555 Other lineage4.1.2.1 None
SRR7131287 Other lineage2.2.1.1 None
SRR9971370 Sensitive lineage4.4.1.1.1 None
ERR10219876 Other lineage4.3.4.2 None
ERR10796553 Other lineage4.9;lineage1.1 None
ERR10796561 Other lineage4.3.2 None
ERR10796560 MDR-TB lineage4.9;lineage4.1 None
ERR10796559 Other lineage4.9 None
ERR10796562 Other lineage4.3.4.1 None
ERR10796572 Other lineage4.3.4.1 None
ERR10796566 Other lineage4.9;lineage4.3.4 None
ERR10796568 Other lineage4.9 None
ERR10796577 RR-TB lineage4.9 None
ERR10796571 Other lineage4.9 None
ERR10796588 Other lineage4 None
ERR10796582 HR-TB lineage4.3 None
ERR10796581 HR-TB lineage4.1.2 None
ERR10796589 Other lineage4.9 None
ERR10796592 Other lineage4 None
ERR10796591 MDR-TB lineage4.9 None
ERR10796596 Other lineage4.9 None
ERR10796594 Other lineage4.9 None
ERR10796593 RR-TB lineage4 None
ERR10796599 Other lineage4 None
ERR10796617 Other lineage4.3.4.1 None
ERR10796628 Other lineage4.3.3 None
ERR10796618 Other lineage4.3.4.1 None
ERR10796620 Other lineage4.1.1 None
ERR10796615 Other lineage4 None
ERR10796626 Other lineage4.1.2 None
ERR10796630 HR-TB None
ERR10796629 Other lineage4 None
ERR10796632 Other lineage4.3.3 None
ERR10796631 Other lineage4.3.4 None
ERR10796634 Other lineage4 None
ERR10796635 Other lineage4 None
ERR3283043 Other lineage4.9 None
ERR10796640 Other lineage4.1.2.1 None
ERR3283008 Other lineage4.9 None
ERR3283015 Sensitive lineage4.9 None
ERR3283049 Sensitive lineage4.9 None
ERR405190 Sensitive lineage4.9 None
ERR3283051 Other lineage4.9 None
ERR405217 Sensitive lineage2.2.1 None
ERR405191 Other lineage4.9 None
ERR6197040 Other lineage4.9 None
ERR473279 Other lineage4.9 None
ERR5908229 Sensitive lineage4.3.3 None
ERR6197022 Other lineage4.9 None
ERR6197030 Other lineage4.9 None
ERR6197034 Other lineage4.9 None
ERR6197042 RR-TB lineage4.9 None
ERR773806 Sensitive lineage2.2.1 None
ERR751317 Sensitive lineage4.9 None
ERR6197044 RR-TB lineage4.9 None
ERR751330 MDR-TB lineage5.1.1 None
ERR9117729 Other lineage3 None
SRR1013554 Pre-XDR-TB lineage2.2 None
ERR9117732 Other lineage1.2.2.2 None
ERR9117805 Other lineage4.3.2 None
ERR9117812 Other lineage4.3.1.1 None
ERR9117788 Other lineage3 None
SRR1013570 Pre-XDR-TB lineage2.2.1 None
SRR1013553 Pre-XDR-TB lineage2.2 None
SRR1013589 HR-TB lineage2.2.1 None
SRR1013578 MDR-TB lineage2.2 None
SRR1013577 MDR-TB lineage2.2 None
SRR1013601 HR-TB lineage2.2.1 None
SRR1013600 HR-TB lineage2.2.1.1 None
SRR1013630 Pre-XDR-TB lineage2.2 None
SRR1013602 HR-TB lineage2.2.1 None
SRR1013610 HR-TB lineage4 None
SRR1013617 MDR-TB None
SRR1013629 Pre-XDR-TB lineage2.2 None
SRR1013609 HR-TB lineage4 None
SRR1013618 MDR-TB None
SRR1048853 Pre-XDR-TB lineage4;lineage2.2.2 None
SRR1047996 MDR-TB lineage2.2.2 None
SRR10315465 MDR-TB lineage4.4.1.1 None
SRR1048886 MDR-TB lineage2.2 None
SRR1048869 Pre-XDR-TB lineage2.2.2 None
SRR1048885 MDR-TB None
SRR1048969 MDR-TB lineage2.2.2 None
SRR1048965 Pre-XDR-TB lineage2.2.1 None
SRR1048982 HR-TB None
SRR1048993 HR-TB lineage4.9 None
SRR1048983 HR-TB None
SRR1048991 HR-TB lineage2.2.2 None
SRR11342688 Other lineage4.2.2.2 None
SRR1049006 MDR-TB lineage2.2.2 None
SRR11342685 HR-TB lineage4.4.1.1 None
SRR1048994 HR-TB lineage4.9 None
SRR1049022 HR-TB lineage4.9;lineage2 None
SRR1049027 Pre-XDR-TB None
SRR11342648 MDR-TB lineage4.1.1.3 None
SRR11349201 MDR-TB lineage4.1.1.3 None
SRR1140723 Sensitive lineage4.6.1.1 None
SRR11349203 MDR-TB lineage4.4.1.1 None
SRR11349207 RR-TB lineage2.2.1 None
SRR1140586 HR-TB lineage4.9 None
SRR1144809 HR-TB lineage2.2.1 None
SRR1173720 Other lineage4.9 None
SRR1144759 MDR-TB lineage2.2 None