Rv3596c - c.879C>G
Drug resistance types
53 Sensitive
17 RR-TB
129 HR-TB
31 MDR-TB
17 Pre-XDR-TB
0 XDR-TB
155 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 68 |
| lineage4.1.1 | 3 |
| 142 | |
| lineage2.2.1 | 28 |
| lineage2.1 | 2 |
| lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 1 |
| lineage4 | 38 |
| lineage4.3.4.2.1 | 2 |
| lineage4.1.2.1 | 15 |
| lineage4.3 | 2 |
| lineage4.8 | 6 |
| lineage3 | 8 |
| lineage4.4.1.1 | 4 |
| lineage2.2 | 5 |
| lineage4.6.1.2 | 5 |
| lineage4.8;La3 | 1 |
| lineage4.1 | 3 |
| La1.8.1 | 2 |
| lineage6 | 3 |
| lineage5.1.4 | 1 |
| lineage4.1.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.2.1 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage3.1.1 | 2 |
| lineage4.7 | 2 |
| lineage4.1.3 | 3 |
| lineage4.6.2.2 | 5 |
| lineage5.2 | 2 |
| lineage4.2.1.1 | 1 |
| La2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.2.2 | 2 |
| La1 | 1 |
| lineage6.1.1 | 2 |
| La1.3 | 5 |
| La1.2 | 1 |
| lineage4.9;La1.3 | 1 |
| lineage2 | 3 |
| lineage1.2.2.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.5 | 3 |
| lineage4.6.1.1 | 1 |
| lineage4.3.4 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.2 | 1 |
| lineage6.3.1 | 1 |
| lineage4.8;lineage4.1 | 2 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La3 | 1 |
| lineage4.3.3 | 3 |
| lineage2.2.1.1 | 4 |
| lineage3.1 | 2 |
| lineage4.3.4.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| La1.7.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 402 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675477 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4815777 | Other | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | ERR4814683 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675221 | HR-TB | None | SRR3675229 | Other | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | SRR3675236 | HR-TB | None | SRR3675249 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | SRR3675283 | Sensitive | lineage4.9 | None | ERR176651 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | SRR3675279 | Other | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | SRR3675312 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | SRR3675387 | Sensitive | None | ERR4815556 | RR-TB | lineage3 | None | SRR3675502 | Other | None | ERR176740 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675503 | Sensitive | lineage4.9 | None | SRR3675510 | Other | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675537 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | SRR3675547 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR4816151 | Other | lineage4.8 | None | ERR4817037 | Other | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675574 | HR-TB | None | SRR3675550 | Other | None | ERR4817060 | RR-TB | None | SRR3675572 | Other | None | ERR212125 | HR-TB | lineage4 | None | ERR212033 | HR-TB | None | ERR4817069 | RR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212121 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4817735 | Other | lineage4.8 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816656 | HR-TB | None | ERR4816729 | Sensitive | lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818787 | MDR-TB | lineage6 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR234659 | HR-TB | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818394 | Other | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4818929 | HR-TB | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818615 | Other | None | SRR5007188 | Other | lineage4 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR5341396 | Other | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR2514552 | Sensitive | lineage3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR2514125 | Other | lineage3 | None | SRR5341418 | Other | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341302 | HR-TB | None | ERR2514692 | Other | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR5341333 | HR-TB | None | ERR4819933 | Other | lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341323 | Sensitive | lineage4 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341470 | HR-TB | None | SRR5341330 | HR-TB | None | SRR5341456 | Other | None | SRR6045519 | HR-TB | None | SRR6045526 | HR-TB | None | ERR4821334 | RR-TB | lineage4.1.3 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821578 | Other | lineage4.1.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046397 | Other | None | SRR6046492 | Other | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046644 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046540 | HR-TB | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | SRR6046824 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR502472 | Other | lineage4.6.2.2 | None | ERR4831117 | HR-TB | None | SRR6789626 | Other | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6785413 | Other | lineage2.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR4831638 | Sensitive | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR294266 | HR-TB | None | ERR502889 | Other | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | SRR7585435 | Other | lineage4.9 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7535086 | Other | None | ERR502943 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR323039 | HR-TB | None | ERR323043 | HR-TB | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR323045 | HR-TB | None | ERR067681 | HR-TB | None | ERR323053 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | DRR185024 | Other | lineage2.2.2 | None | ERR067699 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR1063858 | HR-TB | None | ERR1063862 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR1063859 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283025 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR363445 | Sensitive | lineage4 | None | ERR3445504 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR363426 | Sensitive | lineage4 | None | ERR3439432 | Other | None | ERR363479 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797058 | Other | lineage4.9 | None | ERR3797046 | HR-TB | None | ERR3797069 | Other | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797086 | Other | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR400320 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769552 | Other | La1.3 | None | ERR4769408 | Other | La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769514 | Other | La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4797313 | HR-TB | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4769555 | Other | La1.3 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798431 | HR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798406 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811030 | Sensitive | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR6358991 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR4812155 | Sensitive | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR5336148 | Other | None | ERR6359069 | Other | lineage4.9 | None | ERR6359045 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736875 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR702406 | HR-TB | None | ERR736839 | Other | None | ERR736874 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR752229 | Other | lineage4.5 | None | ERR9117709 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787165 | Other | lineage6 | None | ERR990545 | Other | lineage3 | None | ERR9787197 | Other | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9787336 | Other | lineage6 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1169194 | Other | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172817 | HR-TB | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172310 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173363 | HR-TB | None | SRR1173484 | Other | lineage4 | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173788 | Other | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1175508 | Other | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1175049 | RR-TB | None | SRR1175074 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12416824 | HR-TB | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR14782405 | HR-TB | None | SRR15368973 | Other | None | SRR16157123 | Other | lineage4.9 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR19304036 | HR-TB | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | ERR176778 | HR-TB | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR176751 | HR-TB | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2 | None | SRR21469201 | Other | La1.7.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR11081257 | Other | lineage4.8 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR176779 | HR-TB | None | ERR4815604 | HR-TB | None |
|---|
