SRR9971041
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR9971222
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR10315556
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22048550
|
Other
|
lineage1.1.3.1
|
None
|
SRR1792025
|
Other
|
La1.8.1
|
None
|
SRR18003013
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR6046815
|
Other
|
lineage3
|
None
|
SRR18003042
|
Other
|
lineage2.2.1
|
None
|
ERR176817
|
Sensitive
|
lineage4.3.4.2.1
|
mw
|
SRR7645977
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR21727760
|
Other
|
lineage2.2.1
|
None
|
SRR6046852
|
MDR-TB
|
lineage3
|
None
|
ERR4820230
|
Other
|
lineage4.1.2.1
|
gb
|
SRR18002974
|
Other
|
lineage2.2.1
|
None
|
SRR3675565
|
Other
|
lineage4
|
None
|
SRR3675227
|
Sensitive
|
lineage4.9
|
None
|
ERR9119733
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10796564
|
Other
|
lineage4.3.3
|
None
|
ERR978726
|
RR-TB
|
lineage4.8
|
None
|
SRR1173834
|
Other
|
lineage4.6.1.1
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
SRR6045957
|
Other
|
lineage4.9
|
None
|
SRR7131123
|
Other
|
lineage4.8
|
None
|
SAMEA3501073
|
RR-TB
|
lineage4.8
|
None
|
ERR2600609
|
Other
|
lineage4.8
|
None
|
ERR4821172
|
RR-TB
|
lineage4.9
|
None
|
ERR4821276
|
Sensitive
|
lineage3
|
None
|
SRR7645899
|
Other
|
lineage2.2.1
|
None
|
SRR7070320
|
Other
|
lineage4.8
|
None
|
SRR7069784
|
Other
|
lineage1.2.2.2
|
None
|
SRR7131161
|
Other
|
lineage4.8
|
None
|
SRR7070080
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR7070592
|
Sensitive
|
lineage4.8
|
None
|
ERR4457829
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR11342687
|
RR-TB
|
lineage4.2.2.2
|
None
|
SRR3618864
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7069675
|
Other
|
lineage3
|
None
|
SAMEA3501015
|
Other
|
lineage4.8
|
None
|
ERR867526
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR19303784
|
Other
|
lineage4.2.1
|
None
|
ERR9117740
|
Other
|
lineage3.1.1
|
None
|
SRR22048474
|
RR-TB
|
lineage4.8
|
None
|
ERR10796581
|
Other
|
lineage4.1.2
|
None
|
ERR2027257
|
Other
|
lineage4.1.2.1
|
None
|
ERR4818797
|
Sensitive
|
lineage4.5
|
None
|
SRR7069946
|
Other
|
lineage4.8
|
None
|
SRR11349194
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4863405
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
SRR6046818
|
Other
|
lineage4.2.1
|
gb
|
SRR7131196
|
Other
|
lineage4.8
|
None
|
SRR7131028
|
Other
|
lineage4.8
|
None
|
SRR6045267
|
RR-TB
|
lineage4.8
|
None
|
SRR7131114
|
Other
|
lineage4.1.2
|
None
|
SRR3675532
|
HR-TB
|
lineage3.1.3
|
None
|
ERR171143
|
Sensitive
|
lineage4.9
|
za
|
SRR7070251
|
Sensitive
|
lineage4.1.1.3.1
|
None
|
ERR867574
|
Other
|
lineage4.9
|
None
|
ERR978761_ERR978762_ERR978760
|
RR-TB
|
lineage4.8
|
None
|
ERR6197042
|
Other
|
lineage4.9
|
None
|
SRR19303796
|
Other
|
lineage4.3.3
|
None
|
SRR7755688
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4818726
|
Other
|
lineage4.1.2.1
|
None
|
SRR6046860
|
Other
|
lineage4.4.1.1
|
None
|
ERR978762
|
Other
|
lineage4.8
|
None
|
SRR18002976
|
Other
|
lineage2.2.1
|
None
|
SRR11349175
|
Other
|
lineage2.2.1
|
None
|
ERR978750_ERR978752_ERR978751
|
RR-TB
|
lineage4.8
|
None
|
SRR18002937
|
Other
|
lineage2.2.1
|
None
|
SRR11349184
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16627752
|
RR-TB
|
lineage4.4
|
None
|
SRR3675252
|
Other
|
lineage1.1.2
|
None
|
SRR3675230
|
Other
|
lineage3;lineage4
|
None
|
SRR18714882
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1062880
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR6045763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972417
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7069082
|
Other
|
lineage4.1.2.1
|
None
|
ERR970449
|
RR-TB
|
lineage4.1.1.3
|
None
|
ERR10796563
|
Other
|
lineage4.3.3
|
None
|
ERR4818126
|
Other
|
lineage1.2.2
|
None
|
SRR15276982
|
XDR-TB
|
lineage3
|
None
|
SRR9971201
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR10796573
|
Other
|
lineage4.8
|
None
|
SRR18002954
|
Other
|
lineage2.2.1
|
None
|
SRR3675461
|
RR-TB
|
lineage4.9
|
None
|
ERR867554
|
Other
|
lineage4.3.4.1
|
None
|
SRR6045056
|
Other
|
lineage2.2.1
|
gb
|
SRR6045591
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045516
|
Other
|
lineage3.1.1
|
None
|
SRR6046482
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
SRR19304104
|
Other
|
lineage4.8
|
None
|
ERR10796624
|
Other
|
lineage4.8
|
None
|
SRR13888750
|
Other
|
La2
|
None
|
ERR4972567
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR11349209
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4819242
|
HR-TB
|
lineage4.6.2.2
|
None
|
SRR7069193
|
Other
|
lineage4.3.1.1
|
None
|
SAMN02380990
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR10315567
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10796572
|
Other
|
lineage4.3.4.1;lineage4.9
|
None
|
SRR7131251
|
Other
|
lineage2.2.1
|
None
|
SRR6153166
|
Other
|
lineage1.2.1.2.1
|
ca
|
ERR502478
|
RR-TB
|
lineage4.9
|
None
|
SRR11342689
|
Other
|
lineage4.1.2.1
|
None
|
SRR7236134
|
Other
|
La1.8.1
|
None
|
SRR18002903
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR867540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18003047
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342653
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18003007
|
MDR-TB
|
lineage4.5
|
None
|
ERR10796595
|
Other
|
lineage4.9
|
None
|
SAMEA3450033
|
Other
|
lineage4.8
|
None
|
SRR11342636
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1172816
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR19303917
|
Sensitive
|
lineage2.2.1
|
None
|
SRR18002985
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10796617
|
Other
|
lineage4.3.4.1
|
None
|
SRR18002948
|
Other
|
lineage2.2.1
|
None
|
SRR5818612
|
Other
|
lineage4.2.2.2
|
None
|
SRR7069030
|
Other
|
lineage3
|
None
|
SRR6045178
|
Other
|
lineage3
|
None
|
ERR3283032
|
Other
|
lineage4.9
|
None
|
ERR867541
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR5987263
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342643
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR10796558
|
Sensitive
|
lineage4.3.4.1;lineage4.9
|
None
|
SRR7131004
|
Other
|
lineage4.6.2.2
|
None
|
SRR19303960
|
Sensitive
|
lineage4.4.1.2
|
None
|
ERR3275321
|
Sensitive
|
lineage3.1.1
|
nl
|
ERR9117763
|
HR-TB
|
lineage3
|
None
|
ERR867568
|
Other
|
lineage2.2.1;lineage4
|
None
|
ERR2600562
|
MDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
SRR11349193
|
RR-TB
|
lineage4.1.2
|
None
|
SRR11342640
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1180440
|
Other
|
lineage4.9
|
None
|
ERR4809333
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4815121
|
HR-TB
|
lineage4.6.2.2
|
None
|
ERR036207
|
Other
|
lineage4.3;lineage4.9
|
None
|
SRR11342649
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1140574
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR18002941
|
RR-TB
|
lineage2.2.1
|
None
|
ERR10762318
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4812495
|
Other
|
lineage4.1.2.1
|
pe
|
ERR2229760
|
Sensitive
|
lineage4.8
|
dk
|
ERR867524
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4819017
|
Other
|
lineage3
|
None
|
SRR3619764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR19303820
|
RR-TB
|
lineage4.8
|
None
|
SRR6046440
|
Other
|
lineage3.1.2.2
|
None
|
ERR502474
|
RR-TB
|
lineage4.9
|
None
|
SRR3675513
|
Other
|
lineage4.8
|
None
|
SRR7070553
|
Other
|
lineage3
|
None
|
ERR4816403
|
Other
|
lineage6.2.3
|
None
|
ERR978694_ERR978693
|
Other
|
lineage4.8
|
None
|
SRR6045464
|
Other
|
lineage4.1.1.3
|
None
|
SRR3675265
|
Other
|
lineage4
|
None
|
ERR2229436
|
Other
|
lineage4.8
|
None
|
ERR5865106
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR11349211
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR019855
|
Other
|
lineage3
|
None
|
ERR10796575
|
Other
|
lineage4.3.4;lineage4.9
|
None
|
ERR10796594
|
Other
|
lineage4.9
|
None
|
ERR10796640
|
Other
|
lineage4.1.2.1
|
None
|
SRR18002933
|
Other
|
lineage2.2.1
|
None
|
ERR4769554
|
RR-TB
|
lineage4.9
|
None
|
ERR10796628
|
Other
|
lineage4.3.3
|
None
|
ERR978756
|
Other
|
lineage4.8
|
None
|
DRR184982
|
Other
|
lineage2.2.1
|
None
|
SRR7131183
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972425
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6045843
|
Other
|
lineage4.2.2.2
|
None
|
SRR6046616
|
Other
|
lineage4.3.1.1
|
None
|
SRR6046210
|
Other
|
lineage4.9
|
None
|
SRR7131229
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045664
|
Other
|
lineage4.2.1
|
None
|
ERR6866241
|
Other
|
lineage4.3.2
|
None
|
SRR18213721
|
Other
|
lineage4.8
|
None
|
ERR10796626
|
Other
|
lineage4.1.2.1
|
None
|
SRR7069800
|
Other
|
lineage3.1.2.1
|
None
|
SRR18002876
|
MDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR7069954
|
Other
|
lineage1.2.2.2
|
None
|
SRR6824501
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7070461
|
Other
|
lineage3
|
None
|
SRR7070609
|
Other
|
lineage4.2.2.2
|
None
|
SRR5007163
|
Other
|
lineage3;lineage4.9
|
None
|
SRR7069518
|
Other
|
lineage4.8
|
None
|
ERR7801176
|
RR-TB
|
lineage4.6.5
|
None
|
ERR4821119
|
Other
|
lineage4.4.1.1
|
None
|
SRR18909918
|
Other
|
lineage2.2.1.1
|
None
|
SRR7131237
|
Other
|
lineage2.2.1
|
None
|
ERR1665404
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872322
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR171135
|
Other
|
lineage2.2.1
|
za
|
ERR867538
|
Other
|
lineage4.2.2.2
|
None
|
SRR11349172
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR7755642
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR18003038
|
Other
|
lineage2.2.1
|
None
|
SRR1173421
|
Other
|
lineage4.9
|
None
|
ERR867575
|
Other
|
lineage4.9
|
None
|
SRR6046497
|
Sensitive
|
lineage4.9
|
None
|
SRR7070469
|
Other
|
lineage4.3.1.1
|
None
|
SRR7070446
|
Other
|
lineage3
|
None
|
SRR7070369
|
Other
|
lineage1.2.2.2
|
None
|
ERR2229234
|
Sensitive
|
lineage4.8
|
None
|
SRR21661648
|
Other
|
lineage2.2.1
|
None
|
ERR4819002
|
HR-TB
|
lineage4.8
|
None
|
SRR3601585
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR19303817
|
Other
|
lineage2.2.1
|
None
|
SRR19304115
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796620
|
Other
|
lineage4.1.1.1
|
None
|
SRR5007169
|
RR-TB
|
lineage4.8.2
|
None
|
SRR11342682
|
Other
|
lineage4.1.2
|
None
|
SRR7069013
|
Other
|
lineage4.8
|
None
|
SRR6045603
|
Other
|
lineage4.1.1.3
|
None
|
SRR6045553
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
SRR7070521
|
Other
|
lineage4.2.1.1
|
None
|
SRR7069687
|
Other
|
lineage4.1.1.3.1
|
None
|
SRR18002997
|
Other
|
lineage2.2.1
|
None
|
SRR11342691
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5818647
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR19304094
|
Other
|
lineage6.1.2
|
None
|
SRR5007186
|
Sensitive
|
lineage4.6
|
None
|
SRR11349196
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5087596
|
Other
|
La1.8.1
|
None
|
SRR19303949
|
Other
|
lineage4.3.3
|
None
|
ERR2513904
|
Other
|
lineage3.1.2.2
|
gb
|
ERR10796615
|
Other
|
lineage4.3.3;lineage4.9
|
None
|
SRR19303818
|
Other
|
lineage4.3.4.2
|
None
|
SRR11342660
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6152980
|
HR-TB
|
lineage4.8
|
ca
|
SRR7070293
|
Other
|
lineage4.8
|
None
|
SRR6046020
|
Other
|
lineage3
|
None
|
ERR3439265
|
Sensitive
|
lineage4.9
|
None
|
SRR7069128
|
Other
|
lineage1.2.1.2.1
|
None
|
ERR4821769
|
Other
|
lineage4.1.2.1
|
None
|
ERR176605
|
HR-TB
|
lineage4.3.4.2.1
|
mw
|
ERR4830887
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4818570
|
Other
|
lineage4.3.3
|
None
|
ERR911930
|
Other
|
lineage4.8
|
None
|
ERR2512423
|
Other
|
lineage4.1.1.3
|
None
|
ERR4816198
|
Sensitive
|
lineage4.1.3
|
None
|
ERR502473
|
RR-TB
|
lineage4.9
|
None
|
SRR6855774
|
Other
|
lineage2.2.1
|
None
|
ERR9117699
|
Other
|
lineage4.1.2.1
|
None
|
ERR4811035
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
SRR19303876
|
Other
|
lineage4.7
|
None
|
SRR7070479
|
Other
|
lineage4.1.2
|
None
|
SRR11349208
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2027290
|
Other
|
lineage3.1.2.1;lineage4.9
|
None
|
SRR6046484
|
Other
|
lineage1.2.2.2
|
None
|
SRR6789624
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR12062547
|
HR-TB
|
lineage2.2.1
|
None
|
ERR867572
|
Other
|
lineage4.9
|
None
|
ERR867523
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6045125
|
Other
|
lineage1.1.2
|
None
|
SRR5818586
|
RR-TB
|
lineage4.2.2.2
|
None
|
SRR3675509
|
Other
|
lineage4.9
|
None
|
ERR4820030
|
Other
|
lineage4.9
|
None
|
SRR18003012
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6045496
|
Other
|
lineage6.1.3
|
None
|
ERR4821127
|
HR-TB
|
lineage4.6.2.2
|
gb
|
SRR6046177
|
Other
|
lineage3.1.2
|
None
|
SRR6046359
|
Other
|
lineage4.7
|
None
|
SRR7131032
|
Other
|
lineage2.2.1
|
None
|
SRR7069137
|
Other
|
lineage4.8
|
None
|
ERR4769436
|
Other
|
La1.3
|
None
|
SRR6046376
|
Other
|
lineage3
|
None
|
SRR7070087
|
Other
|
lineage4.8.1
|
None
|
ERR4821272
|
RR-TB
|
lineage4.1.2.1
|
None
|
SRR7069251
|
Other
|
lineage3
|
None
|
ERR9117788
|
Other
|
lineage3
|
None
|
SRR6046668
|
Sensitive
|
lineage1.1.2
|
gb
|
ERR9117678
|
Other
|
lineage4.6.2.2
|
None
|
SRR7131145
|
Other
|
lineage4.1.2.1
|
None
|
ERR2229541
|
Other
|
lineage4.8
|
None
|
SRR7755652
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR1062920
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR6045928
|
Other
|
lineage4.9
|
None
|
SRR6257067
|
HR-TB
|
lineage4.2.1
|
None
|
SRR7069664
|
Other
|
lineage4.1.2
|
None
|
ERR11465488
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR6046089
|
Other
|
lineage4.1.2.1
|
None
|
SRR7069931
|
Other
|
lineage4.2.2.2
|
None
|
ERR4829817
|
Sensitive
|
lineage4.3.3
|
it
|
SRR11342684
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR4816610
|
Other
|
lineage4.3.3
|
None
|
ERR10219876
|
Other
|
lineage4.3.4.2
|
None
|
ERR4819198
|
Other
|
lineage2.2.1
|
None
|
ERR4819772
|
Other
|
lineage1.1.3.1
|
None
|
SRR1049676
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
ERR4820742
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR1238559
|
Other
|
lineage4.9
|
None
|
SRR6045485
|
Other
|
lineage4.9
|
None
|
ERR502481
|
RR-TB
|
lineage4.9
|
None
|
SRR21469200
|
Other
|
La1.7.1
|
None
|
SRR19317568
|
Sensitive
|
lineage4.5
|
None
|
ERR4820720
|
Other
|
lineage4.1.2.1
|
None
|
SRR6046839
|
Other
|
lineage4.9
|
None
|
SRR7131236
|
Other
|
lineage4.3.4.2
|
None
|
SRR1173719
|
Other
|
lineage4.9
|
None
|
SRR1735596
|
RR-TB
|
lineage4.9
|
None
|
SRR7070315
|
Other
|
lineage4.8
|
None
|
SRR10869254
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4586795
|
Other
|
La1.8.1
|
None
|
SRR1140753
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
ERR751345
|
Other
|
lineage5.1.1
|
None
|
ERR9117827
|
Other
|
lineage1.2.2.2
|
None
|
ERR8774355
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342669
|
Other
|
lineage4.8
|
None
|
ERR5162090
|
RR-TB
|
lineage4.9
|
None
|
SRR6045071
|
Other
|
lineage4.3.1.1
|
None
|
SRR5007167
|
RR-TB
|
lineage4.1.1.3.1
|
None
|
SRR7755655
|
Other
|
lineage4.1.2.1
|
None
|
SRR15316595
|
RR-TB
|
lineage4.4.2
|
None
|
SRR22175249
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6046208
|
Other
|
lineage4.8
|
None
|
SRR6045614
|
Other
|
lineage4.8
|
None
|
ERR7801175
|
HR-TB
|
lineage4.6.5
|
None
|
SRR3675552
|
Other
|
lineage4.9
|
None
|
SRR7068873
|
Other
|
lineage4.8
|
None
|
SRR6046117
|
Other
|
lineage4.9
|
None
|
ERR10796571
|
Other
|
lineage4.9
|
None
|
ERR10796589
|
Other
|
lineage4.9
|
None
|
ERR3806588
|
Other
|
lineage6.1.3
|
None
|
ERR10796633
|
Other
|
lineage4.3.4.2
|
None
|
SRR7069835
|
Other
|
lineage2.2.1
|
None
|
ERR10796634
|
Other
|
lineage4.7
|
None
|
SRR6397640
|
Other
|
lineage4.2.1.1
|
None
|
SRR7131068
|
Other
|
lineage4.8
|
None
|
ERR4822114
|
Other
|
lineage4.1.2.1
|
None
|
SRR7645973
|
Other
|
lineage4.3.4.1
|
None
|
ERR978752
|
Other
|
lineage4.8
|
None
|
SRR6044983
|
Other
|
lineage3.1.1
|
None
|
ERR983238
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4818050
|
Sensitive
|
lineage4.6.2.2
|
None
|
ERR10796559
|
Other
|
lineage4.9
|
None
|
ERR867555
|
Other
|
lineage3
|
None
|
ERR867569
|
Other
|
lineage4.9
|
None
|
SRR11342642
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR19303985
|
Sensitive
|
lineage4.8
|
None
|
ERR4819579
|
HR-TB
|
lineage4.3.3
|
None
|
ERR5908124
|
Other
|
lineage4.8
|
None
|
ERR3275941
|
RR-TB
|
lineage4.3
|
nl
|
ERR502523
|
Other
|
lineage6.3.1
|
None
|
SRR16156832
|
RR-TB
|
lineage2.2;lineage4
|
None
|
ERR4820736
|
Sensitive
|
lineage4.1.2.1
|
gb
|
SRR10869071
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002901
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002963
|
Other
|
lineage2.2.1
|
None
|
SRR7131152
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6045613
|
Other
|
lineage3.1.3
|
None
|
SRR7755645
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6397579
|
Other
|
lineage4.4.1.2
|
ca
|
SRR7070535
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR7131121
|
Other
|
lineage4.3.3
|
None
|
SRR7131147
|
Other
|
lineage4.1.2.1
|
None
|
ERR2228838
|
Other
|
lineage4.8
|
None
|
ERR4769508
|
RR-TB
|
lineage4.9
|
None
|
SRR7645927
|
Other
|
lineage4.8
|
None
|
SRR10315579
|
Other
|
lineage2.2.1.1
|
None
|
SRR3675267
|
Other
|
La1.7;lineage4.9
|
None
|
ERR867567
|
RR-TB
|
lineage3
|
None
|
ERR9907785
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR7069725
|
Sensitive
|
lineage4.1.2.1
|
None
|
SAMEA3501065
|
RR-TB
|
lineage4.8
|
None
|
ERR4132460
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11349158
|
Other
|
lineage4.3.2.1
|
None
|
SRR18002984
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR6044857
|
Other
|
lineage4.8.1
|
gb
|
ERR270777
|
HR-TB
|
lineage4.1.2
|
None
|
SRR11342686
|
MDR-TB
|
lineage4.8
|
None
|
SRR3675291
|
Sensitive
|
lineage4.6
|
gb
|
SRR11342651
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR10315696
|
Sensitive
|
lineage4.3.2.1
|
None
|
ERR978748
|
Other
|
lineage4.8
|
None
|
SRR10315751
|
MDR-TB
|
lineage4.8
|
None
|
ERR978755_ERR978756_ERR978754_ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR11349164
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR6046521
|
Other
|
lineage4.4.1.1
|
None
|
ERR4819784
|
Other
|
lineage4.1.2.1
|
None
|
SRR3675389
|
Other
|
lineage4.9
|
None
|
ERR4821704
|
Other
|
lineage4.3.3
|
None
|
ERR5087846
|
Other
|
La1.8.1
|
None
|
ERR978693
|
Other
|
lineage4.8
|
None
|
ERR4812328
|
Other
|
lineage4.3.3
|
pe
|
SRR7645901
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798769
|
Other
|
lineage1.1.3.3
|
None
|
ERR2228890
|
Other
|
lineage4.8;lineage4.9
|
None
|
SRR3675582
|
Other
|
lineage4.9
|
None
|
SRR7070230
|
Other
|
lineage2.2.1.2
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR11342688
|
Other
|
lineage4.2.2.2
|
None
|
SRR6044841
|
Other
|
lineage4.9
|
None
|
SRR6044958
|
Other
|
lineage4.4.1.1
|
None
|
SRR6046246
|
Other
|
lineage3
|
None
|
ERR978760
|
RR-TB
|
lineage4.8
|
None
|
SRR7070329
|
Other
|
lineage3
|
None
|
ERR9896153
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR18003046
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812763
|
Other
|
lineage2.2.1
|
None
|
ERR4816831
|
Other
|
lineage4.1.2.1
|
None
|
SRR18002967
|
HR-TB
|
lineage2.2.1
|
None
|
SRR18003035
|
Other
|
La1.8.1
|
None
|
SAMN02585982
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR7069669
|
Other
|
lineage3.1.1
|
None
|
ERR10796596
|
Other
|
lineage4.9
|
None
|
SRR12062542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11465301
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR3014599
|
Pre-XDR-TB
|
lineage4.1.2.1
|
tn
|
ERR9117805
|
Other
|
lineage4.3.2
|
None
|
SRR6397815
|
Other
|
lineage4.4.1.1
|
None
|
DRR184629
|
Other
|
lineage2.2.1
|
None
|
SRR7070176
|
Other
|
lineage3
|
None
|
SRR7070266
|
Other
|
lineage1.1.2
|
None
|
SRR18911555
|
Other
|
lineage4.1.2.1
|
None
|
ERR3439489
|
RR-TB
|
La1.8.1
|
None
|
ERR171142
|
Other
|
lineage3.1.1;lineage4.9
|
None
|
SRR7069957
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR7070419
|
Other
|
lineage3
|
None
|
SRR1792024
|
Other
|
La1.8.1
|
None
|
SRR5007193
|
RR-TB
|
lineage4.1.1.3.1
|
None
|
SRR7645895
|
Other
|
lineage2.2.1
|
None
|
ERR10796582
|
Other
|
lineage4.3.4.1
|
None
|
SRR6397443
|
Sensitive
|
lineage3.1.1
|
ca
|
ERR2514430
|
Other
|
lineage3.1.2;lineage4.1.1.3.1
|
None
|
ERR10796580
|
Other
|
lineage4
|
None
|
SRR11342698
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR10796593
|
Other
|
lineage4.3
|
None
|
ERR3276170
|
Other
|
lineage4.1.2.1
|
nl
|
ERR11465487
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR18002881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4819641
|
Other
|
lineage4.6.2.2
|
None
|
ERR4813263
|
MDR-TB
|
lineage4.8
|
None
|
ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR2446154
|
Sensitive
|
lineage4.4.1.1
|
nl
|
ERR978767_ERR978765_ERR978766
|
RR-TB
|
lineage4.8
|
None
|
SAMN02380982
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR6045705
|
Other
|
lineage4.9
|
None
|
ERR3797062
|
RR-TB
|
lineage4.9
|
None
|
ERR1023509
|
Other
|
lineage4.9
|
None
|
ERR2228900
|
Other
|
lineage4.8
|
None
|
SRR11349195
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR5007168
|
Other
|
lineage4.8.2;lineage4.9
|
None
|
DRR185024
|
Other
|
lineage2.2.2
|
None
|
SRR7069858
|
Other
|
lineage1.2.1.2.1
|
None
|
SRR11342696
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR7069648
|
Other
|
lineage4.6.2.2
|
None
|
SRR3675449
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR6045295
|
Other
|
lineage4.7
|
None
|
ERR10796552
|
Sensitive
|
lineage4.3.4.1
|
None
|
ERR4815301
|
Other
|
lineage4.4.2
|
None
|
ERR2886463
|
Sensitive
|
lineage2.2.1
|
None
|
SRR14179705
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR3619841
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11342644
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR12062537
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4819982
|
Sensitive
|
lineage2.2.1
|
None
|
SRR9971144
|
RR-TB
|
lineage2.2.1
|
None
|
ERR10796554
|
Sensitive
|
lineage4.1.2
|
None
|
ERR10796578
|
Other
|
lineage2.2.1
|
None
|
SRR16058249
|
Sensitive
|
lineage4.2.2.2
|
None
|
SRR4033549
|
Other
|
lineage2.2.2
|
None
|
SRR18002994
|
MDR-TB
|
lineage4.2.2
|
None
|
SRR7070154
|
Other
|
lineage4.4.1.1
|
None
|
SRR18003032
|
Other
|
lineage2.2.1
|
None
|
ERR978734_ERR978733_ERR978735
|
RR-TB
|
lineage4.8
|
None
|
ERR978746
|
RR-TB
|
lineage4.8
|
None
|
ERR3957925
|
Sensitive
|
lineage4.3.2
|
None
|
ERR8975044
|
Other
|
lineage4.1.1.2
|
None
|
ERR978735
|
Other
|
lineage4.8
|
None
|
ERR4818691
|
Other
|
lineage4.8
|
None
|
DRR188816
|
Sensitive
|
lineage4.2.2
|
None
|
ERR4817294
|
Other
|
lineage4.1.2
|
None
|
ERR4819011
|
Other
|
lineage3.1.2.1
|
None
|
ERR4819864
|
RR-TB
|
lineage1.1.3.1
|
None
|
SRR18002906
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4814617
|
Other
|
lineage1.1.3.1
|
None
|
ERR3283051
|
Other
|
lineage4.9
|
None
|
ERR9992879
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR3675527
|
Other
|
lineage4.9
|
None
|
SRR9971032
|
RR-TB
|
lineage2.2.1
|
None
|
ERR2509886
|
Other
|
lineage3
|
None
|
SRR1173182
|
Other
|
lineage4.6.1.1
|
None
|
SRR7069074
|
Other
|
lineage3
|
None
|
ERR2515032
|
Other
|
lineage3
|
None
|
SRR7070181
|
Other
|
lineage3
|
None
|
SRR1062871
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
SRR1196478
|
Other
|
lineage4.9
|
None
|
SRR6785281
|
Other
|
lineage4.2.1.1
|
None
|
SRR7069258
|
HR-TB
|
lineage3
|
None
|
ERR4815502
|
Other
|
lineage4.1
|
None
|
SRR6046737
|
Other
|
lineage4.9
|
None
|
SRR21469202
|
Other
|
La1.7.1
|
None
|
DRR034348
|
Other
|
lineage2.2.1
|
None
|
SRR7070351
|
Sensitive
|
lineage3
|
None
|
SRR3675496
|
Other
|
lineage4.1.1.3
|
gb
|
ERR867525
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR212114
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR867573
|
Other
|
lineage4.9
|
None
|
SRR10272567
|
Sensitive
|
lineage4.3.3
|
None
|
ERR2229233
|
Sensitive
|
lineage4.8;lineage4.9
|
None
|
ERR1034647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR9117760
|
HR-TB
|
lineage4.3
|
None
|
SAMEA3501070
|
RR-TB
|
lineage4.8
|
None
|
SRR3675538
|
Other
|
lineage4.8
|
None
|
SRR11342664
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR18002987
|
Other
|
lineage2.2.1
|
None
|
ERR4820891
|
Sensitive
|
lineage4.9
|
gb
|
ERR10796576
|
Sensitive
|
lineage4.9
|
None
|
ERR4830892
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10796577
|
Other
|
lineage4.9
|
None
|
SRR6044993
|
Other
|
lineage3
|
None
|
SRR6045743
|
Other
|
lineage3
|
None
|
SRR7070327
|
Other
|
lineage1.1.3.1
|
None
|
ERR2027218
|
Other
|
lineage4.6.2.2
|
None
|
SRR7131275
|
Other
|
lineage4.1.2.1
|
None
|
SRR19241806
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR18002872
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7585400
|
MDR-TB
|
lineage3
|
None
|
SRR7645971
|
Other
|
lineage2.2.1
|
None
|
SRR11342695
|
MDR-TB
|
lineage4.8
|
None
|
ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR6044769
|
Sensitive
|
lineage1.1.2
|
None
|
SRR6046291
|
Other
|
lineage3
|
None
|
SRR6046766
|
Other
|
lineage3.1.1
|
None
|
SRR11349207
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1173770
|
Other
|
lineage4.9
|
None
|
SRR9971046
|
MDR-TB
|
lineage4.8
|
None
|
ERR10796635
|
Other
|
lineage4.8
|
None
|
SRR1049559
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR11342646
|
HR-TB
|
lineage3
|
None
|
SRR1175491
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR7131297
|
Other
|
lineage1.2.1.2
|
None
|
SRR7755649
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR2027252
|
Other
|
lineage4.2.1.1;lineage4.8
|
None
|
ERR978734
|
RR-TB
|
lineage4.8
|
None
|
SRR12062533
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR12634609
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR9971372
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR10796632
|
Other
|
lineage4.3.3
|
None
|
ERR978694
|
Other
|
lineage4.8
|
None
|
SRR7070195
|
Sensitive
|
lineage3.1.2.1
|
None
|
SRR7070458
|
Sensitive
|
lineage3
|
None
|
SRR1049726
|
Other
|
lineage4.1.2.1;lineage4.4.1.1
|
None
|
SRR6044838
|
Other
|
lineage4.9
|
None
|
SRR6045002
|
RR-TB
|
lineage4.9
|
None
|
SRR6045565
|
Other
|
lineage4.6.2.2
|
None
|
SRR6045909
|
Other
|
lineage4.8.1
|
None
|
SRR6046612
|
Other
|
lineage1.1.1.1
|
None
|
SRR7069671
|
HR-TB
|
lineage3
|
None
|
SRR7069839
|
Other
|
lineage4.8
|
None
|
SRR7645924
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR6044873
|
Other
|
lineage4.1.1.3.1
|
None
|
SRR6044787
|
Sensitive
|
lineage4.4
|
None
|
SRR6045778
|
Other
|
lineage3.1
|
None
|
SRR7646018
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1049725
|
Other
|
lineage4.1.2.1;lineage4.4.1
|
None
|
ERR4817915
|
Other
|
lineage4.9
|
None
|
ERR4818897
|
Other
|
lineage4.1.2.1
|
gb
|
SRR7069441
|
Sensitive
|
lineage4.8
|
None
|
SRR12062493
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR19303805
|
Sensitive
|
lineage4.8
|
None
|
SRR19304057
|
Sensitive
|
lineage4.4.1.2
|
None
|
ERR10796591
|
Other
|
lineage4.9
|
None
|
SRR18002947
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18213736
|
Other
|
lineage3
|
None
|
ERR9117732
|
Other
|
lineage1.2.2.2
|
None
|
ERR2600561
|
Other
|
lineage2.2.1;lineage4.8
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4814911
|
Other
|
lineage4.3.3
|
None
|
ERR1815538
|
Other
|
La1.7.1
|
None
|
SAMEA3501063
|
RR-TB
|
lineage4.8
|
None
|
SRR7645928
|
Other
|
lineage4.7
|
None
|
ERR4816690
|
Other
|
|
None
|
ERR1873455
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR1049560
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR18002874
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755657
|
Other
|
lineage4.8
|
None
|
SRR6397733
|
Other
|
lineage4.4.1.2
|
None
|
SRR6046275
|
Other
|
lineage3.1.1;lineage4
|
None
|
SRR18002909
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2229366
|
Other
|
lineage4.8
|
None
|
SRR6046064
|
Other
|
lineage3
|
gb
|
SRR6046848
|
Other
|
lineage4.6.5
|
None
|
SRR7535047
|
RR-TB
|
lineage4.6.1.1
|
None
|
ERR2228899
|
Other
|
lineage4.8
|
None
|
SRR7131232
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1002691
|
HR-TB
|
lineage4.2.1
|
None
|
SRR11342685
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR14334194
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR867522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11342638
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR7070571
|
Sensitive
|
lineage3
|
None
|
ERR3445487
|
Other
|
La1.7.X-unk4
|
None
|
SRR1180446
|
Other
|
lineage4.9
|
None
|
ERR3283043
|
Other
|
lineage4.9
|
None
|
SRR1183080
|
Other
|
lineage4.9
|
None
|
ERR4769480
|
Other
|
La1.3
|
None
|
SRR14801720
|
Other
|
lineage4.8
|
None
|
SRR7131182
|
Other
|
lineage4.1.2.1
|
None
|
SRR1172065
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR11349201
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR16156697
|
RR-TB
|
lineage2.2.1
|
None
|
SRR11349153
|
RR-TB
|
lineage4.1.1.1
|
None
|
ERR911929
|
Other
|
lineage4.8
|
None
|
ERR4821679
|
Other
|
lineage4.3.3
|
None
|
SRR6045017
|
Other
|
lineage3.1.2.2
|
None
|
ERR752012
|
HR-TB
|
lineage1.1.1.1
|
None
|
ERR4830549
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR11342647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR18002988
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002999
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18003033
|
Other
|
lineage2.2.1
|
None
|
ERR4819324
|
Other
|
lineage4.8
|
gb
|
ERR4818407
|
Other
|
lineage4.3.2
|
None
|
ERR4818128
|
Other
|
lineage4.1.2.1
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
SRR19304029
|
Sensitive
|
lineage4.8
|
None
|
SRR1173185
|
Other
|
lineage4.9
|
None
|
SRR6046463
|
Other
|
lineage4.4.1.1
|
None
|
ERR2229147
|
Other
|
lineage4.8
|
None
|
SRR9971112
|
Other
|
lineage2.2.1
|
None
|
SRR6045384
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796598
|
Other
|
lineage4.9
|
None
|
SRR7070515
|
Other
|
lineage1.1.3.1
|
None
|
SRR7070602
|
Other
|
lineage4.2.1
|
None
|
SRR7131122
|
Other
|
lineage2.2.1
|
None
|
SRR7131195
|
Other
|
lineage2.2.1
|
None
|
SRR9971029
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4821054
|
Sensitive
|
lineage3
|
None
|
ERR4814821
|
Other
|
lineage2.2.1
|
None
|
SRR9971168
|
Other
|
lineage4.3.2.1
|
None
|
SRR1792011
|
Other
|
La1.8.1
|
None
|
ERR10796566
|
Other
|
lineage4.9
|
None
|
ERR4819863
|
RR-TB
|
lineage4.9
|
None
|
ERR978754
|
RR-TB
|
lineage4.8
|
None
|
ERR3324368
|
RR-TB
|
lineage1.1.2;lineage6.2.3
|
None
|
ERR6197022
|
Other
|
lineage4.9
|
None
|
SRR19303899
|
Other
|
lineage3
|
None
|
SRR8600288
|
Other
|
La1.8.1
|
None
|
SAMEA3501046
|
RR-TB
|
lineage4.8
|
None
|
SRR7070144
|
Other
|
lineage4.8
|
None
|
SRR6153150
|
Other
|
lineage3.1.1
|
None
|
SRR7068927
|
Other
|
lineage1.2.2.2
|
None
|
SRR18003023
|
Other
|
lineage2.2.1
|
None
|
ERR10762297
|
MDR-TB
|
lineage4.2.1
|
None
|
SAMEA3501067
|
RR-TB
|
lineage4.8
|
None
|
SRR3675282
|
Other
|
lineage3.1.2.1;lineage4
|
None
|
SRR1049582
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR10869285
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR5818684
|
Other
|
lineage4.2.2.2
|
None
|
ERR4817069
|
RR-TB
|
|
None
|
SRR7070134
|
Other
|
lineage3.1.1
|
None
|
SRR6153151
|
Sensitive
|
lineage1.2.1.2.1
|
ca
|
SRR7068946
|
Other
|
lineage4.6.2.2
|
None
|
SRR9971197
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR5917985
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13423546
|
Other
|
lineage4.4.2
|
None
|
SRR5341365
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR6045222
|
Other
|
lineage4.1.2.1
|
None
|
SRR6044815
|
Other
|
lineage4.9
|
None
|
ERR10796555
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796629
|
Other
|
lineage4.1;lineage4.9
|
None
|
SRR11342671
|
RR-TB
|
lineage4.1.3
|
None
|
SRR11342692
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11342673
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR17567917
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR18003002
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5007170
|
Other
|
lineage4.9
|
None
|
SRR5818672
|
Other
|
lineage1.2.2.2
|
None
|
SRR6045726
|
Other
|
lineage3
|
None
|
ERR017781
|
Other
|
lineage3
|
None
|
ERR038289
|
Other
|
lineage4.3.3
|
None
|
ERR4814697
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR9811805
|
MDR-TB
|
lineage4.8
|
None
|
SRR5818610
|
Other
|
lineage3
|
None
|
SRR9971298
|
MDR-TB
|
lineage4.8
|
None
|
ERR10796599
|
Other
|
lineage4.8
|
None
|
ERR10796597
|
Other
|
lineage4.3.3
|
None
|
SRR15508556
|
Other
|
lineage4.3.4.1
|
None
|
SRR12062551
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11342648
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR11342693
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1173310
|
Other
|
lineage3.1.1
|
None
|
SRR6398013
|
Sensitive
|
lineage4.1.2
|
ca
|
ERR4769530
|
RR-TB
|
lineage4.9
|
None
|
SRR18002887
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR18002981
|
Other
|
lineage2.2.1
|
None
|
SRR22424778
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR7069189
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR867544
|
Other
|
lineage4.9
|
None
|
ERR10796627
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
SRR6045986
|
Other
|
lineage3
|
None
|
ERR978727
|
Other
|
lineage4.8
|
None
|
SRR10315693
|
RR-TB
|
lineage4.1.2
|
None
|
ERR4817398
|
Other
|
lineage3.1.1
|
None
|
SRR7069097
|
Other
|
lineage3.1.2.1
|
None
|
SRR7069314
|
Other
|
lineage3
|
None
|
SRR18003030
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR323044
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR5163959
|
Other
|
lineage4.9
|
None
|
ERR4821286
|
Other
|
lineage4.8
|
None
|
ERR10796561
|
Other
|
lineage4.3.2
|
None
|
SRR6046273
|
Other
|
lineage3.1.2
|
None
|
SRR18002930
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR978751
|
Other
|
lineage4.8
|
None
|
SRR10379910
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4821214
|
Other
|
lineage1.2.1.2.1
|
None
|
SRR1140716
|
Other
|
lineage3
|
None
|
SRR10315465
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1049677
|
MDR-TB
|
lineage4.3.3;lineage4.8
|
None
|
SRR1175472
|
RR-TB
|
lineage4.3.4.1
|
None
|
SRR14782539
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4816856
|
Other
|
lineage4.1.2.1
|
None
|
SRR9971017
|
HR-TB
|
lineage2.2.1
|
None
|
SRR9971223
|
Other
|
lineage2.2.1
|
None
|
ERR10796560
|
Other
|
lineage4.9
|
None
|
SRR3675261
|
Other
|
lineage1.2.1.1
|
None
|
SRR16149129
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR4024582
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1735599
|
Other
|
lineage1.2.2.2
|
None
|
SRR7068912
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4820151
|
Other
|
lineage4.8
|
None
|
SRR6045445
|
Other
|
lineage4.3.1.1
|
None
|
SRR6044936
|
Other
|
lineage4.6
|
None
|
ERR2514801
|
Other
|
lineage1.1.3.2
|
gb
|
SRR6045159
|
Other
|
lineage3.1.1
|
None
|
SRR6152899
|
MDR-TB
|
lineage2.2.2
|
ca
|
SRR7068875
|
Other
|
lineage3.1.2.2
|
None
|
ERR978733
|
RR-TB
|
lineage4.8
|
None
|
SRR1181403
|
Other
|
lineage4.9
|
None
|
ERR978761
|
Other
|
lineage4.8
|
None
|
SRR7069377
|
Other
|
lineage3
|
None
|
ERR10796565
|
Other
|
lineage4.9
|
None
|
ERR10796583
|
Other
|
lineage2.2.1
|
None
|
SRR7131053
|
Other
|
lineage2.2.1
|
None
|
SRR7069319
|
Other
|
lineage4.5
|
None
|
SRR6045290
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR978767
|
RR-TB
|
lineage4.8
|
None
|
SRR18213726
|
Other
|
lineage3
|
None
|
ERR2514279
|
Sensitive
|
lineage3
|
gb
|
SRR19303815
|
Other
|
lineage4.8
|
None
|
SRR11349203
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2600422
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR978747
|
Other
|
lineage4.8
|
None
|
ERR2027230
|
Other
|
lineage4.2.2.2
|
None
|
ERR2027255
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR10796631
|
Other
|
lineage4.3.4.2;lineage4.9
|
None
|
ERR4820410
|
RR-TB
|
lineage3.1.1
|
None
|
SRR6044904
|
Other
|
lineage3
|
None
|
DRR185000
|
Other
|
lineage1.1.1.1
|
None
|
ERR9285979
|
RR-TB
|
lineage3.1.1
|
None
|
SRR10614047
|
Sensitive
|
lineage4.9
|
None
|
SRR18002935
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9971065
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1173740
|
Other
|
lineage3;lineage4
|
None
|
ERR10796568
|
Other
|
lineage4.9
|
None
|
ERR10762248
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR6044957
|
Sensitive
|
lineage4.8.2
|
None
|
SRR7068998
|
Sensitive
|
lineage3.1.3
|
None
|
ERR4814623
|
Sensitive
|
lineage4.8
|
None
|
SRR14801652
|
HR-TB
|
lineage4.3.3
|
None
|
ERR3275615
|
Sensitive
|
lineage4.4.1.1
|
nl
|
SRR18002875
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR18002961
|
Other
|
lineage2.2.1
|
None
|
SRR18002964
|
Other
|
lineage2.2.1
|
None
|
SRR1184329
|
Other
|
lineage4.9
|
None
|
ERR10796553
|
Other
|
lineage4.9
|
None
|
SRR18002980
|
Other
|
lineage2.2.1
|
None
|
SRR11342676
|
HR-TB
|
lineage4.6.2.2
|
None
|
SRR18003052
|
Other
|
lineage2.2.1.1
|
None
|
ERR9786164
|
RR-TB
|
lineage4.1.1.3
|
None
|
SAMN02567682
|
Other
|
lineage4.6.1.1
|
ug
|
SRR8758877
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR10315472
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1062928
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
ERR4819383
|
RR-TB
|
lineage4.9
|
None
|
ERR502517
|
Other
|
lineage5.1.1
|
None
|
SRR1173565
|
MDR-TB
|
lineage3.1;lineage4.6.1.1
|
None
|
SRR1792022
|
Other
|
La1.8.1
|
None
|
SRR22048484
|
Sensitive
|
lineage4.8
|
None
|
SRR3675234
|
Other
|
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9
|
None
|
ERR4815104
|
Sensitive
|
lineage4.8
|
None
|
ERR867571
|
Other
|
lineage4.9
|
None
|
ERR978726_ERR978727
|
RR-TB
|
lineage4.8
|
None
|
ERR1023502
|
MDR-TB
|
lineage2;lineage4
|
None
|
SRR6045422
|
Other
|
lineage4.3.1.1
|
None
|
SRR7645972
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR18002908
|
Other
|
lineage2.2.1
|
None
|
SRR6046159
|
Other
|
lineage4.8.2
|
None
|
SRR6045887
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR1182985
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR18002998
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6045621
|
Other
|
lineage4.1.1.3
|
None
|
SRR7069027
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR7069959
|
Other
|
lineage4.5
|
None
|
SRR1792012
|
Other
|
La1.8.1
|
None
|
ERR3283006
|
RR-TB
|
lineage4.9
|
None
|
SRR19304035
|
Other
|
lineage4.1.2.1
|
None
|
SRR7068863
|
Sensitive
|
lineage4.6.2.2
|
None
|
SRR1062918
|
Other
|
lineage3
|
None
|
SRR11342655
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173833
|
Other
|
lineage4.9
|
None
|
ERR5979454
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR6045312
|
Other
|
lineage1.1.3.3
|
None
|
ERR4819166
|
Other
|
lineage3
|
gb
|
SAMEA3501052
|
RR-TB
|
lineage4.8
|
None
|
ERR4816232
|
Other
|
lineage4
|
None
|
SRR7070548
|
Other
|
lineage4.1.2.1
|
None
|
ERR10796636
|
Other
|
lineage4.1.2.1
|
None
|
SRR6046442
|
Other
|
lineage3
|
None
|
SRR11349159
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1735598
|
RR-TB
|
lineage4.9
|
None
|
SRR5007182
|
MDR-TB
|
lineage3
|
None
|
SRR7131216
|
Other
|
lineage4.1.2.1
|
None
|
ERR4817060
|
Other
|
|
None
|
SRR7068971
|
Sensitive
|
lineage3
|
None
|
SRR7069760
|
Other
|
lineage3
|
None
|
ERR3283008
|
Other
|
lineage4.9
|
None
|
ERR4818851
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR4821007
|
Other
|
lineage1.2.2.2
|
None
|
ERR867521
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173281
|
Other
|
lineage3
|
None
|
SRR18003024
|
RR-TB
|
lineage2.2.1
|
None
|
SRR6785282
|
Other
|
lineage4.3.3
|
None
|
ERR4815452
|
Other
|
lineage4.3.3
|
None
|
SRR1181256
|
Other
|
lineage4.9
|
None
|
SRR19303924
|
Other
|
lineage4.1.2.1
|
None
|
SRR19325518
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR2100067
|
Other
|
lineage4.3.3
|
None
|
SRR7069249
|
Sensitive
|
lineage3
|
None
|
SRR7069472
|
HR-TB
|
lineage3
|
None
|
SRR7070256
|
Other
|
lineage4.2.1
|
None
|
SRR18002956
|
Other
|
lineage2.2.1
|
None
|
SRR18003040
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18003045
|
Other
|
lineage2.2.1
|
None
|
SRR19303907
|
Other
|
lineage4.8
|
None
|
SRR18002888
|
RR-TB
|
lineage2.2.1
|
None
|
SAMN02628522
|
Pre-XDR-TB
|
lineage3
|
ir
|
SRR1175474
|
Other
|
lineage4.9
|
None
|
SRR6044952
|
Other
|
lineage4.9
|
None
|
SRR18911231
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR6046173
|
Sensitive
|
lineage3
|
None
|
SRR6046343
|
Other
|
lineage2.2.1
|
None
|
SRR7131061
|
Other
|
lineage2.2.1
|
None
|
SRR7131233
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR7131287
|
Other
|
lineage2.2.1.1
|
None
|
ERR867570
|
RR-TB
|
lineage4.9
|
None
|
ERR10796592
|
Other
|
lineage4.9
|
None
|
SRR023487
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1140736
|
Other
|
lineage4.1.2.1
|
None
|
ERR4820503
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7068876
|
Other
|
lineage4.8
|
None
|
ERR2229733
|
Other
|
lineage4.8
|
dk
|
SRR7645974
|
Other
|
lineage4.3.4.1
|
None
|
SRR7765062
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR5818694
|
Other
|
lineage3;lineage4.2.2.2
|
None
|
ERR4818904
|
Other
|
lineage4.8
|
None
|
ERR10762275
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR10762495
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173170
|
Other
|
lineage4.9
|
None
|
SRR11342662
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1140712
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR978750
|
RR-TB
|
lineage4.8
|
None
|
ERR2446580
|
Sensitive
|
lineage3.1.1
|
nl
|
ERR2513082
|
Other
|
lineage4.1.2.1
|
gb
|
SRR11567803
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7131149
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR7069033
|
Sensitive
|
lineage4.2.1
|
None
|
SRR7645906
|
Other
|
lineage2.2.1
|
None
|
SRR5007204
|
Other
|
lineage4.1.2.1
|
None
|
SRR6045424
|
Other
|
lineage1.1.2
|
None
|
SRR11342680
|
Other
|
lineage4.8
|
None
|
ERR4808964
|
RR-TB
|
lineage2.2.1
|
None
|
SRR22048536
|
Other
|
lineage4.3.3
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
SRR5007161
|
RR-TB
|
lineage4.1.1.3.1;lineage4.9
|
None
|
SRR5007165
|
Other
|
lineage3
|
None
|
SRR7068941
|
Other
|
lineage4.8.2
|
None
|
ERR4816549
|
Other
|
lineage2.2.1
|
None
|
SRR7069922
|
Other
|
lineage2.2.1
|
None
|
ERR978746_ERR978747_ERR978748
|
RR-TB
|
lineage4.8
|
None
|
ERR911929_ERR911930
|
Other
|
lineage4.8
|
None
|
SRR18003004
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4822261
|
RR-TB
|
lineage2.2.1
|
None
|
ERR867527
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR978765
|
RR-TB
|
lineage4.8
|
None
|
SRR9971200
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR6046113
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR7069347
|
Other
|
lineage4.1.2.1
|
None
|
SRR1049673
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR023450
|
RR-TB
|
lineage2.2.1
|
None
|
ERR10796630
|
Other
|
lineage6.2.3
|
None
|
ERR978755
|
RR-TB
|
lineage4.8
|
None
|
SRR5818572
|
Sensitive
|
lineage4.2.2.2
|
None
|
ERR10796562
|
Other
|
lineage4.3.4.1
|
None
|
SRR10315464
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR10993951
|
RR-TB
|
La1.6
|
None
|
ERR4972588
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR2228910
|
Other
|
lineage4.8
|
None
|
SRR15315797
|
RR-TB
|
lineage2.2.1
|
None
|
ERR867542
|
HR-TB
|
lineage4.2.1.1;lineage4.3.3
|
None
|
ERR9117812
|
Other
|
lineage4.3.1.1
|
None
|
ERR2027209
|
MDR-TB
|
lineage1.2.1.1
|
None
|
ERR10796622
|
Other
|
lineage4.8
|
None
|
SRR18002891
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10315547
|
Sensitive
|
lineage2.2.1
|
None
|
SRR11342658
|
RR-TB
|
lineage4.1.2
|
None
|
SRR11349191
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR18003015
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18003009
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070223
|
HR-TB
|
lineage3
|
None
|
SRR9971088
|
RR-TB
|
lineage2.2.1
|
None
|
ERR2513382
|
RR-TB
|
lineage4.1.1.3
|
None
|
SRR1184012
|
Other
|
lineage4.1.1.3
|
None
|
SRR11342668
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|