Run ID: SRR19317568
Sample name:
Date: 03-04-2023 21:27:53
Number of reads: 1631206
Percentage reads mapped: 97.29
Strain: lineage4.5
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
rpoB | 762640 | p.Gly945Glu | missense_variant | 0.98 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 801237 | c.429G>A | synonymous_variant | 1.0 |
Rv1258c | 1406101 | p.Pro414Ser | missense_variant | 1.0 |
embR | 1416545 | p.Thr268Ile | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475703 | n.2046A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475715 | n.2058G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3449393 | p.Leu297Ser | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474376 | p.Ala124Thr | missense_variant | 1.0 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |