TB-Profiler result

Run: ERR3439265
Summary

Run ID: ERR3439265

Sample name:

Date: 01-04-2023 02:00:28

Number of reads: 42120

Percentage reads mapped: 3.01

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.99
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.38 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.67 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.67 kanamycin, capreomycin, aminoglycosides, amikacin
pncA 2289073 p.His57Asp missense_variant 1.0 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 760982 c.1176G>C synonymous_variant 1.0
rpoB 760991 c.1185G>C synonymous_variant 1.0
rpoB 760997 c.1191G>C synonymous_variant 1.0
rpoB 761015 c.1209G>C synonymous_variant 1.0
rpoB 762003 p.Asn733Gln missense_variant 1.0
rpoB 762017 c.2211A>G synonymous_variant 1.0
rpoB 762101 c.2295C>G synonymous_variant 1.0
rpoB 762114 p.Ile770Val missense_variant 1.0
rpoB 762167 c.2361T>C synonymous_variant 1.0
rpoB 762185 c.2379G>C synonymous_variant 1.0
rpoB 762209 c.2403C>G synonymous_variant 0.67
rpoB 762212 c.2406G>C synonymous_variant 0.67
rpoB 762218 c.2412T>C synonymous_variant 0.5
rpoB 762257 c.2451C>G synonymous_variant 0.67
rpoB 762266 c.2460T>C synonymous_variant 0.67
rpoB 762879 p.Met1025Leu missense_variant 1.0
rpoC 762896 c.-474G>C upstream_gene_variant 0.67
rpoC 762899 c.-471G>C upstream_gene_variant 1.0
rpoB 762912 p.His1036Asn missense_variant 0.67
rpoC 762917 c.-453C>T upstream_gene_variant 0.67
rpoC 762923 c.-447C>G upstream_gene_variant 1.0
rpoC 762929 c.-441G>C upstream_gene_variant 1.0
rpoC 762932 c.-438G>C upstream_gene_variant 0.67
rpoC 762947 c.-423C>G upstream_gene_variant 0.67
rpoC 762971 c.-399G>C upstream_gene_variant 0.6
rpoC 762983 c.-387C>A upstream_gene_variant 0.5
rpoC 762995 c.-375G>T upstream_gene_variant 1.0
rpoB 763005 p.Cys1067Val missense_variant 1.0
rpoC 763013 c.-357C>A upstream_gene_variant 1.0
rpoB 763014 p.Met1070Leu missense_variant 0.5
rpoB 763017 p.Gln1071Glu missense_variant 1.0
rpoC 763022 c.-348C>G upstream_gene_variant 0.67
rpoC 763028 c.-342T>C upstream_gene_variant 1.0
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763053 c.-317_-315delTTGinsCTC upstream_gene_variant 1.0
rpoC 763070 c.-300T>C upstream_gene_variant 1.0
rpoB 763075 p.Thr1090Ile missense_variant 1.0
rpoC 763088 c.-282C>G upstream_gene_variant 1.0
rpoC 763444 c.75T>C synonymous_variant 1.0
rpoC 763456 c.87A>G synonymous_variant 1.0
rpoC 763468 c.99G>C synonymous_variant 1.0
rpoC 763486 c.117T>C synonymous_variant 1.0
rpoC 763492 c.123G>C synonymous_variant 1.0
rpoC 763496 p.Lys43Arg missense_variant 0.5
rpoC 763528 c.159G>T synonymous_variant 1.0
rpoC 763531 c.162G>C synonymous_variant 1.0
rpoC 763534 c.165T>C synonymous_variant 1.0
rpoC 763537 c.168C>G synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763570 c.201G>C synonymous_variant 0.83
rpoC 763578 p.Phe70Tyr missense_variant 0.33
rpoC 763600 c.231C>G synonymous_variant 0.4
rpoC 763603 c.234C>T synonymous_variant 0.6
rpoC 763609 c.240C>G synonymous_variant 0.33
rpoC 763615 c.246G>C synonymous_variant 1.0
rpoC 763622 p.Ala85Ser missense_variant 0.75
rpoC 763633 c.264T>C synonymous_variant 1.0
rpoC 763642 c.273G>C synonymous_variant 0.5
rpoC 763660 c.291T>C synonymous_variant 1.0
rpoC 763672 c.303C>G synonymous_variant 0.67
rpoC 763696 c.327T>C synonymous_variant 0.67
rpoC 763711 c.342G>C synonymous_variant 0.67
rpoC 763714 c.345G>C synonymous_variant 0.67
rpoC 763717 c.348T>C synonymous_variant 0.67
rpoC 763729 c.360G>C synonymous_variant 0.67
rpoC 763751 p.Ile128Val missense_variant 0.67
rpoC 764338 p.Glu323Asp missense_variant 1.0
rpoC 764353 c.984G>C synonymous_variant 1.0
rpoC 764371 c.1002G>C synonymous_variant 0.75
rpoC 764380 c.1011G>C synonymous_variant 0.5
rpoC 764383 c.1014C>G synonymous_variant 0.5
rpoC 764387 c.1018T>C synonymous_variant 1.0
rpoC 764398 c.1029G>C synonymous_variant 0.5
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 1.0
rpoC 764410 c.1041G>C synonymous_variant 0.5
rpoC 764431 c.1062G>C synonymous_variant 0.8
rpoC 764434 c.1065A>G synonymous_variant 1.0
rpoC 764435 c.1066_1068delAGGinsCGC synonymous_variant 1.0
rpoC 764441 p.Ile358Leu missense_variant 1.0
rpoC 764446 c.1077T>C synonymous_variant 1.0
rpoC 764449 c.1080G>C synonymous_variant 0.6
rpoC 764452 c.1083T>C synonymous_variant 1.0
rpoC 764455 c.1086G>C synonymous_variant 0.4
rpoC 764458 c.1089G>C synonymous_variant 0.4
rpoC 764461 c.1092A>G synonymous_variant 1.0
rpoC 764477 p.Glu370* stop_gained 0.4
rpoC 764497 c.1128A>G synonymous_variant 1.0
rpoC 764498 p.Ser377Ala missense_variant 1.0
rpoC 764536 c.1167G>C synonymous_variant 1.0
rpoC 764539 c.1170C>G synonymous_variant 1.0
rpoC 764548 c.1179G>C synonymous_variant 0.4
rpoC 764560 c.1191T>C synonymous_variant 0.67
rpoC 764561 p.Pro398Ala missense_variant 0.4
rpoC 764566 c.1197C>G synonymous_variant 0.8
rpoC 764575 c.1206T>G synonymous_variant 1.0
rpoC 764581 c.1212T>C synonymous_variant 1.0
rpoC 764582 p.Leu405Met missense_variant 1.0
rpoC 764602 c.1233C>T synonymous_variant 0.33
rpoC 764605 c.1236G>C synonymous_variant 0.67
rpoC 764611 c.1242G>T synonymous_variant 0.25
rpoC 764623 c.1254C>G synonymous_variant 0.62
rpoC 764632 c.1263T>C synonymous_variant 1.0
rpoC 764635 c.1266C>G synonymous_variant 0.22
rpoC 764644 c.1275G>C synonymous_variant 0.8
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764653 c.1284G>C synonymous_variant 0.2
rpoC 764677 c.1308C>G synonymous_variant 0.33
rpoC 764701 c.1332C>G synonymous_variant 0.43
rpoC 764705 p.Leu446Ala missense_variant 0.67
rpoC 764751 p.Val461Asp missense_variant 0.6
rpoC 764764 c.1395T>C synonymous_variant 1.0
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 1.0
rpoC 764797 c.1428G>C synonymous_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.8
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.6
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.4
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.8
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.8
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.8
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.6
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.75
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.67
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 1.0
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 1.0
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.67
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.67
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 1.0
rrs 1472312 n.467_468insA non_coding_transcript_exon_variant 0.67
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.67
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.5
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.5
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.5
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.5
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.75
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.5
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.5
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.5
rrs 1472571 n.726G>T non_coding_transcript_exon_variant 0.5
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.6
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 1.0
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.6
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.33
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.67
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.25
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.75
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.33
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.33
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.71
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.29
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.57
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.29
rrs 1472754 n.909G>T non_coding_transcript_exon_variant 0.29
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.29
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.57
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.4
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 1.0
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 0.67
rrs 1472838 n.993A>G non_coding_transcript_exon_variant 0.67
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.67
rrs 1472844 n.999C>A non_coding_transcript_exon_variant 0.67
rrs 1472847 n.1002G>A non_coding_transcript_exon_variant 1.0
rrs 1472849 n.1004C>T non_coding_transcript_exon_variant 1.0
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 1.0
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 1.0
rrs 1472860 n.1015C>T non_coding_transcript_exon_variant 1.0
rrs 1472863 n.1018T>G non_coding_transcript_exon_variant 1.0
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 1.0
rrs 1472878 n.1033G>T non_coding_transcript_exon_variant 0.67
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 1.0
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.83
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.5
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.5
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.75
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 1.0
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.83
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.5
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.67
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.79
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.6
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.86
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.27
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.36
rrs 1473097 n.1252G>A non_coding_transcript_exon_variant 0.3
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 1.0
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.5
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.6
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.5
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.4
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 1.0
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.27
rrs 1473135 n.1290C>A non_coding_transcript_exon_variant 0.18
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473147 n.1302G>A non_coding_transcript_exon_variant 0.5
rrs 1473164 n.1319C>T non_coding_transcript_exon_variant 0.6
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.5
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473283 n.1438T>C non_coding_transcript_exon_variant 0.6
rrs 1473289 n.1444T>A non_coding_transcript_exon_variant 0.67
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.5
rrs 1473324 n.1479G>A non_coding_transcript_exon_variant 0.67
rrl 1474450 n.793T>A non_coding_transcript_exon_variant 1.0
rrl 1474454 n.797G>A non_coding_transcript_exon_variant 1.0
rrl 1474466 n.809G>A non_coding_transcript_exon_variant 1.0
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 1.0
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 1.0
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 1.0
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 1.0
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 1.0
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 1.0
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 1.0
rrl 1474583 n.926C>T non_coding_transcript_exon_variant 1.0
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 1.0
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 1.0
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474709 n.1053_1056delTGGT non_coding_transcript_exon_variant 1.0
rrl 1474717 n.1060_1061insGTGAG non_coding_transcript_exon_variant 1.0
rrl 1474723 n.1066G>A non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 1.0
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 1.0
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 1.0
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474777 n.1120T>C non_coding_transcript_exon_variant 1.0
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 1.0
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.83
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.83
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.33
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474799 n.1142G>A non_coding_transcript_exon_variant 0.29
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.25
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.86
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 1.0
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.33
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.6
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1474917 n.1260G>T non_coding_transcript_exon_variant 0.67
rrl 1475692 n.2035G>C non_coding_transcript_exon_variant 1.0
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.33
rrl 1475752 n.2095C>G non_coding_transcript_exon_variant 0.33
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 1.0
rrl 1475766 n.2109G>C non_coding_transcript_exon_variant 1.0
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.83
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.43
rrl 1475776 n.2119G>C non_coding_transcript_exon_variant 0.29
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.25
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 0.58
rrl 1475880 n.2223C>G non_coding_transcript_exon_variant 0.33
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.75
rrl 1475881 n.2224T>G non_coding_transcript_exon_variant 0.67
rrl 1475882 n.2225C>G non_coding_transcript_exon_variant 0.33
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.72
rrl 1475892 n.2235A>G non_coding_transcript_exon_variant 0.28
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.22
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.83
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.56
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.5
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.77
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 1.0
rrl 1475963 n.2306G>A non_coding_transcript_exon_variant 0.56
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.67
rrl 1475998 n.2341C>T non_coding_transcript_exon_variant 0.5
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.8
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.8
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 1.0
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 1.0
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 1.0
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.86
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.86
rrl 1476308 n.2651G>T non_coding_transcript_exon_variant 0.4
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 0.4
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 1.0
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 1.0
rrl 1476316 n.2659G>A non_coding_transcript_exon_variant 0.25
rrl 1476322 n.2665C>A non_coding_transcript_exon_variant 0.23
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.19
rrl 1476336 n.2679C>T non_coding_transcript_exon_variant 0.44
rrl 1476356 n.2699C>A non_coding_transcript_exon_variant 0.3
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.58
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.57
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.93
rrl 1476368 n.2711T>C non_coding_transcript_exon_variant 0.27
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.63
rrl 1476381 n.2724G>A non_coding_transcript_exon_variant 0.8
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.89
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.54
rrl 1476383 n.2726T>G non_coding_transcript_exon_variant 0.57
rrl 1476384 n.2727G>T non_coding_transcript_exon_variant 0.33
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.5
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 0.57
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.26
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.82
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.22
rrl 1476442 n.2785T>A non_coding_transcript_exon_variant 0.3
rrl 1476443 n.2786G>T non_coding_transcript_exon_variant 0.37
rrl 1476455 n.2798C>A non_coding_transcript_exon_variant 0.33
rrl 1476456 n.2799A>T non_coding_transcript_exon_variant 0.26
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.5
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.62
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.42
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.88
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.5
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 1.0
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.5
rrl 1476529 n.2872A>T non_coding_transcript_exon_variant 0.5
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.33
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.5
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.83
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.67
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.67
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.83
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 1.0
rpsA 1833668 p.Ile43Val missense_variant 0.67
rpsA 1833676 c.135A>G synonymous_variant 0.67
rpsA 1833679 c.138G>C synonymous_variant 0.67
rpsA 1833694 c.153G>C synonymous_variant 0.67
rpsA 1833727 c.186G>C synonymous_variant 1.0
rpsA 1833734 p.Ala65Ser missense_variant 1.0
rpsA 1833742 c.201A>G synonymous_variant 1.0
rpsA 1833979 c.438T>C synonymous_variant 0.67
rpsA 1834000 c.459G>C synonymous_variant 0.5
rpsA 1834015 c.474G>C synonymous_variant 0.5
rpsA 1834024 c.483G>C synonymous_variant 0.5
rpsA 1834030 c.489C>G synonymous_variant 0.5
rpsA 1834034 p.Ile165Val missense_variant 0.5
rpsA 1834040 p.Lys167Gln missense_variant 0.5
rpsA 1834046 p.Ile169Leu missense_variant 0.5
rpsA 1834102 c.561T>C synonymous_variant 0.5
rpsA 1834108 c.567C>G synonymous_variant 0.5
rpsA 1834222 c.681T>C synonymous_variant 1.0
rpsA 1834231 c.690T>C synonymous_variant 1.0
rpsA 1834240 c.699T>C synonymous_variant 1.0
rpsA 1834243 c.702G>C synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834294 c.753G>C synonymous_variant 1.0
rpsA 1834298 p.Gln253Glu missense_variant 1.0
rpsA 1834303 c.762T>C synonymous_variant 1.0
rpsA 1834307 p.Asp256Gln missense_variant 0.67
rpsA 1834312 p.Glu257Asp missense_variant 0.67
rpsA 1834318 c.777C>G synonymous_variant 0.67
rpsA 1834327 c.786G>C synonymous_variant 1.0
rpsA 1834340 p.Met267Leu missense_variant 0.67
rpsA 1834348 c.807T>C synonymous_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ald 3087084 c.266delA frameshift_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3475159 p.Asn385Asp missense_variant 1.0
clpC1 4038403 c.2302T>C synonymous_variant 1.0
clpC1 4039916 c.789T>C synonymous_variant 0.67
clpC1 4039931 c.774T>C synonymous_variant 0.67
clpC1 4039937 p.Val256Ile missense_variant 0.67
clpC1 4039940 c.765G>C synonymous_variant 0.67
clpC1 4039946 c.759A>C synonymous_variant 0.67
clpC1 4039949 c.756G>C synonymous_variant 0.67
clpC1 4039952 c.753T>C synonymous_variant 0.67
clpC1 4039955 c.750G>C synonymous_variant 0.67
clpC1 4039966 p.Leu247Val missense_variant 0.67
clpC1 4040000 p.His235Lys missense_variant 0.67
clpC1 4040003 c.702G>C synonymous_variant 0.67
clpC1 4040009 c.696C>G synonymous_variant 0.67
clpC1 4040018 c.687G>C synonymous_variant 0.67
clpC1 4040021 c.684A>C synonymous_variant 0.67
clpC1 4040024 c.681A>G synonymous_variant 0.67
clpC1 4040030 c.675C>G synonymous_variant 0.67
clpC1 4040033 c.672G>C synonymous_variant 0.67
clpC1 4040057 c.648C>T synonymous_variant 0.67
embB 4246864 c.351C>T synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0