Rv0668 - c.1275G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
36 Sensitive
20 RR-TB
49 HR-TB
29 MDR-TB
4 Pre-XDR-TB
1 XDR-TB
56 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 62 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| 4 | |
| lineage2.2.1 | 22 |
| lineage4.1.2.1 | 9 |
| lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage4.6.5 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.6.1.1 | 3 |
| lineage1.2.1.2.1 | 1 |
| La1.3 | 1 |
| lineage2.2.1.1 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage3 | 5 |
| La1.8.1 | 5 |
| lineage4.8 | 5 |
| lineage4.2.2.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.1.1.1 | 2 |
| lineage4.4.1.1.1 | 2 |
| lineage4.8.1 | 3 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 3 |
| La2 | 1 |
| La1.4 | 1 |
| lineage6 | 1 |
| lineage4.2.1 | 3 |
| La1.7.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.1.3 | 4 |
| lineage3;lineage4 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.3.4 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4.9.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage5.1.1 | 1 |
| lineage4.6.1 | 1 |
| M.canetti;lineage1 | 1 |
| lineage6.1.3 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2 | 1 |
| lineage4.3.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage3.1.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.4.2 | 1 |
| lineage1.1.2;lineage4 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.2 | 1 |
| lineage2;lineage4 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 195 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283042 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4796577 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR176651 | Other | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR4819357 | Sensitive | lineage4.9 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | ERR8665994 | Other | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | ERR2693228 | RR-TB | lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR400443 | Sensitive | lineage1.2.1.2.1 | None | ERR4769423 | Other | La1.3 | None | ERR4816852 | Other | lineage4.9 | None | ERR3439265 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR4188213 | Other | La1.8.1 | None | ERR3797043 | Sensitive | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR9786076 | Sensitive | lineage3 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861381 | HR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR16278274 | Other | La1.4 | None | ERR9787336 | RR-TB | lineage6 | None | SRR19304064 | MDR-TB | lineage2.2.1 | None | SRR19303931 | Other | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR4188222 | Other | La1.8.1 | None | SRR19303788 | Sensitive | lineage4.8 | None | SRR21469201 | Other | La1.7.1 | None | SRR15315797 | RR-TB | lineage2.2.1;lineage4 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7236330 | Other | La1.8.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | ERR473332 | Other | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR3283046 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4821143 | Other | lineage4.9 | None | SRR1238559 | Other | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR6046210 | Other | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | SRR16156775 | Other | lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR181887 | Other | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR192070 | Sensitive | lineage4.9 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR4797141 | Sensitive | lineage3 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR4796351 | Sensitive | lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR19303813 | Sensitive | lineage4.8 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR7535086 | Other | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR5311077 | Other | La1.8.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR4817692 | HR-TB | lineage1.1.2;lineage4 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR1023509 | Other | lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR7240033 | Other | La1.8.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR4817069 | RR-TB | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR1162864 | Other | lineage4.1.2.1 | None | SRR1173281 | Other | lineage3 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR6044952 | Other | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR1640750 | Other | None | SRR6045217 | Sensitive | lineage4.9 | None |
|---|
