Run ID: SRR22048484
Sample name:
Date: 04-04-2023 03:52:24
Number of reads: 2069142
Percentage reads mapped: 94.02
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491695 | c.913C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473276 | n.1431A>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475945 | n.2288C>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168428 | c.2184delG | frameshift_variant | 1.0 |
PPE35 | 2168905 | p.Ile570Val | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746275 | p.Val442Phe | missense_variant | 1.0 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.2 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407678 | c.525G>C | synonymous_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |