EBG00000313339 - n.2288C>A
Drug resistance types
33 Sensitive
32 RR-TB
11 HR-TB
45 MDR-TB
18 Pre-XDR-TB
1 XDR-TB
196 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 56 |
| lineage2.2.1 | 47 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 5 |
| lineage1.2.1.2.1 | 2 |
| lineage4.6.2.2 | 3 |
| lineage4.8 | 31 |
| lineage4.3.1.1 | 5 |
| lineage4.2.1 | 8 |
| lineage2.2.2 | 6 |
| lineage4.3 | 2 |
| lineage4.1.2.1 | 20 |
| lineage4.1.1.1 | 5 |
| lineage3.1.2.1 | 4 |
| lineage2.2.1.1 | 3 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.3.2 | 1 |
| lineage1.1.2 | 4 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage3 | 29 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage4.8.1 | 3 |
| lineage4.3.3 | 10 |
| lineage2.2.1;lineage4 | 1 |
| lineage4 | 2 |
| lineage1.2.2.2 | 4 |
| lineage4.3.2.1 | 2 |
| lineage6.1.2 | 1 |
| lineage3.1.1 | 10 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.3.4.1 | 4 |
| lineage4.4.1.1 | 12 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.1.1.3 | 4 |
| lineage4.1.2 | 4 |
| lineage4.4.1.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage3.1.2.2 | 2 |
| lineage3.1.1;lineage4 | 1 |
| lineage1.2.1.1 | 2 |
| lineage4.2.2.2 | 8 |
| lineage6.2.3 | 2 |
| lineage4.1.1.3.1 | 2 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage6.1.3 | 1 |
| lineage4.7 | 2 |
| lineage2.2;lineage4 | 1 |
| lineage4.8.2 | 1 |
| lineage4.6 | 3 |
| La1.8.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.2.2 | 1 |
| lineage5.1.1 | 2 |
| lineage4.3.4.2 | 2 |
| lineage4.1.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.5 | 2 |
| lineage4.3.4.1;lineage4.9 | 1 |
| lineage4.6.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 336 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045705 | Other | lineage4.9 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR11342638 | MDR-TB | lineage4.4.1.1.1 | None | SRR7069858 | Other | lineage1.2.1.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR7069648 | Other | lineage4.6.2.2 | None | ERR10796578 | Other | lineage2.2.1 | None | SRR18002961 | Other | lineage2.2.1 | None | ERR10796553 | Other | lineage4.9 | None | SRR11342676 | HR-TB | lineage4.6.2.2 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR22048484 | Sensitive | lineage4.8 | None | SRR6045422 | Other | lineage4.3.1.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR7070602 | Other | lineage4.2.1 | None | SRR9971029 | MDR-TB | lineage2.2.2 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR9117760 | HR-TB | lineage4.3 | None | SRR5818452 | Other | lineage4.9 | None | ERR10796577 | Other | lineage4.9 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR5818469 | Other | lineage4.9 | None | ERR3283008 | Other | lineage4.9 | None | ERR10796555 | Other | lineage4.1.2.1 | None | SRR5007170 | Other | lineage4.9 | None | SRR9971372 | MDR-TB | lineage4.1.1.1 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | ERR10796627 | Other | lineage4.1.2.1;lineage4.9 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796591 | Other | lineage4.9 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR5007165 | Other | lineage3 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR6046815 | Other | lineage3 | None | SRR3675565 | Other | lineage4 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796640 | Other | lineage4.1.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR6045957 | Other | lineage4.9 | None | SRR18213721 | Other | lineage4.8 | None | ERR10796626 | Other | lineage4.1.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR6046117 | Other | lineage4.9 | None | SRR7069518 | Other | lineage4.8 | None | SRR7070320 | Other | lineage4.8 | None | SRR7069784 | Other | lineage1.2.2.2 | None | SRR7070080 | Pre-XDR-TB | lineage3 | None | SRR5818435 | Sensitive | lineage4.9 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | ERR9907785 | RR-TB | lineage4.3.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR19304094 | Other | lineage6.1.2 | None | ERR4819784 | Other | lineage4.1.2.1 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR11349208 | MDR-TB | lineage2.2.1 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6045125 | Other | lineage1.1.2 | None | SRR18002985 | HR-TB | lineage2.2.1 | None | SRR7069669 | Other | lineage3.1.1 | None | SRR7069030 | Other | lineage3 | None | SRR18911555 | Other | lineage4.1.2.1 | None | ERR9117788 | Other | lineage3 | None | SRR6046668 | Sensitive | lineage1.1.2 | gb | SRR7131004 | Other | lineage4.6.2.2 | None | ERR10796582 | Other | lineage4.3.4.1 | None | ERR10796583 | Other | lineage2.2.1 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | ERR3797062 | RR-TB | lineage4.9 | None | SRR7070571 | Sensitive | lineage3 | None | SRR6044904 | Other | lineage3 | None | ERR3283043 | Other | lineage4.9 | None | SRR1183080 | Other | lineage4.9 | None | SRR6045158 | Other | lineage4.9 | None | SRR7070350 | Sensitive | lineage4.4.1.1 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | ERR4818691 | Other | lineage4.8 | None | ERR4819011 | Other | lineage3.1.2.1 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1182985 | Pre-XDR-TB | lineage3 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR867573 | Other | lineage4.9 | None | ERR4814821 | Other | lineage2.2.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR10796576 | Sensitive | lineage4.9 | None | ERR10796636 | Other | lineage4.1.2.1 | None | SRR6046442 | Other | lineage3 | None | SRR6153150 | Other | lineage3.1.1 | None | SRR7070134 | Other | lineage3.1.1 | None | ERR867521 | MDR-TB | lineage2.2.1 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR7069249 | Sensitive | lineage3 | None | SRR7070256 | Other | lineage4.2.1 | None | ERR9811805 | MDR-TB | lineage4.8 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR5818389 | Other | lineage4.9 | None | ERR867544 | Other | lineage4.9 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | ERR4817915 | Other | lineage4.9 | None | SRR7068876 | Other | lineage4.8 | None | SRR19303805 | Sensitive | lineage4.8 | None | SRR19304057 | Sensitive | lineage4.4.1.2 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18213736 | Other | lineage3 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR9971223 | Other | lineage2.2.1 | None | ERR2446580 | Sensitive | lineage3.1.1 | nl | SRR1735599 | Other | lineage1.2.2.2 | None | SRR6045321 | Other | lineage1.1.3.1 | None | SRR7068875 | Other | lineage3.1.2.2 | None | SRR6046275 | Other | lineage3.1.1;lineage4 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR7069931 | Other | lineage4.2.2.2 | None | ERR3275321 | Sensitive | lineage3.1.1 | nl | SRR11342684 | HR-TB | lineage4.4.1.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR4816403 | Other | lineage6.2.3 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR1173719 | Other | lineage4.9 | None | SRR11342669 | Other | lineage4.8 | None | ERR10796564 | Other | lineage4.3.3 | None | SRR6045071 | Other | lineage4.3.1.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR18002876 | MDR-TB | lineage2.2.1;lineage2.2.2 | None | SRR3675552 | Other | lineage4.9 | None | ERR3806588 | Other | lineage6.1.3 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR10796634 | Other | lineage4.7 | None | SRR7069675 | Other | lineage3 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR6044983 | Other | lineage3.1.1 | None | ERR10796559 | Other | lineage4.9 | None | ERR9117740 | Other | lineage3.1.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SRR7070369 | Other | lineage1.2.2.2 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR19304115 | Other | lineage4.1.2.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | SRR6045267 | RR-TB | lineage4.8 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR11342682 | Other | lineage4.1.2 | None | SRR7069013 | Other | lineage4.8 | None | ERR867574 | Other | lineage4.9 | None | ERR6197042 | Other | lineage4.9 | None | SRR10315579 | Other | lineage2.2.1.1 | None | ERR867567 | RR-TB | lineage3 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR3675291 | Sensitive | lineage4.6 | gb | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR5818386 | Other | lineage4.9 | None | SRR7131251 | Other | lineage2.2.1 | None | SRR7069445 | Sensitive | lineage4.4.1.1 | None | SRR7070479 | Other | lineage4.1.2 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR6044841 | Other | lineage4.9 | None | SRR6046246 | Other | lineage3 | None | SRR7070329 | Other | lineage3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR7069957 | Sensitive | lineage4.1.2.1 | None | SRR5818397 | Other | lineage4.9 | None | SRR5818429 | Sensitive | lineage4.9 | None | ERR10796580 | Other | lineage4 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR6046064 | Other | lineage3 | gb | SRR6046089 | Other | lineage4.1.2.1 | None | SRR19303815 | Other | lineage4.8 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR1172065 | Pre-XDR-TB | lineage3 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR4818128 | Other | lineage4.1.2.1 | None | ERR502517 | Other | lineage5.1.1 | None | SRR3675527 | Other | lineage4.9 | None | SRR6046463 | Other | lineage4.4.1.1 | None | ERR867571 | Other | lineage4.9 | None | SRR5818408 | Other | lineage4.9 | None | SRR6045384 | Other | lineage4.1.2.1 | None | ERR10796598 | Other | lineage4.9 | None | SRR7069027 | MDR-TB | lineage4.3.4.2 | None | ERR4821054 | Sensitive | lineage3 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | ERR4819166 | Other | lineage3 | gb | SRR1735598 | RR-TB | lineage4.9 | None | SRR19241806 | Sensitive | lineage4.1.2.1 | None | SRR6046291 | Other | lineage3 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR9971197 | MDR-TB | lineage4.4.1.1.1 | None | ERR10796635 | Other | lineage4.8 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR19303907 | Other | lineage4.8 | None | SRR5818388 | Other | lineage4.9 | None | ERR10796599 | Other | lineage4.8 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR7069839 | Other | lineage4.8 | None | SRR7069189 | HR-TB | lineage4.1.2.1 | None | SRR7069097 | Other | lineage3.1.2.1 | None | SRR7069314 | Other | lineage3 | None | SRR7069441 | Sensitive | lineage4.8 | None | SRR5818459 | Other | lineage4.9 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR11567803 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069033 | Sensitive | lineage4.2.1 | None | SRR6044936 | Other | lineage4.6 | None | SRR22048536 | Other | lineage4.3.3 | None | ERR10796630 | Other | lineage6.2.3 | None | SRR5818572 | Sensitive | lineage4.2.2.2 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR7069377 | Other | lineage3 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | ERR10796565 | Other | lineage4.9 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR7070223 | HR-TB | lineage3 | None | SRR9971088 | RR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR7069347 | Other | lineage4.1.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR1735596 | RR-TB | lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046208 | Other | lineage4.8 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR7070461 | Other | lineage3 | None | SRR7070609 | Other | lineage4.2.2.2 | None | ERR2600609 | Other | lineage4.8 | None | SRR7068873 | Other | lineage4.8 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796633 | Other | lineage4.3.4.2 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR867575 | Other | lineage4.9 | None | ERR2229234 | Sensitive | lineage4.8 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR5818460 | Other | lineage4.9 | None | SRR7070535 | HR-TB | lineage4.1.2.1 | None | ERR4818726 | Other | lineage4.1.2.1 | None | SRR6046860 | Other | lineage4.4.1.1 | None | SRR11349184 | MDR-TB | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR5007186 | Sensitive | lineage4.6 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR10315696 | Sensitive | lineage4.3.2.1 | None | SRR6046521 | Other | lineage4.4.1.1 | None | ERR10796563 | Other | lineage4.3.3 | None | SRR15276982 | XDR-TB | lineage3 | None | SRR9971201 | MDR-TB | lineage4.4.1.1.1 | None | ERR10796573 | Other | lineage4.8 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR7070293 | Other | lineage4.8 | None | SRR6046020 | Other | lineage3 | None | SRR7069128 | Other | lineage1.2.1.2.1 | None | SRR7069193 | Other | lineage4.3.1.1 | None | SRR11342689 | Other | lineage4.1.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | ERR10796595 | Other | lineage4.9 | None | ERR867572 | Other | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR10796617 | Other | lineage4.3.4.1 | None | ERR10796596 | Other | lineage4.9 | None | SRR5818612 | Other | lineage4.2.2.2 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR5818466 | Other | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | ERR3283032 | Other | lineage4.9 | None | SRR6046359 | Other | lineage4.7 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR7070266 | Other | lineage1.1.2 | None | SRR7069137 | Other | lineage4.8 | None | SRR11342643 | MDR-TB | lineage4.1.1.1 | None | ERR10796558 | Sensitive | lineage4.3.4.1;lineage4.9 | None | SRR7070419 | Other | lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR6045928 | Other | lineage4.9 | None | ERR10796593 | Other | lineage4.3 | None | SRR7069319 | Other | lineage4.5 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR6046848 | Other | lineage4.6.5 | None |
|---|
