Run ID: ERR2027218
Sample name:
Date: 31-03-2023 15:40:56
Number of reads: 15037822
Percentage reads mapped: 89.0
Strain: lineage4.6.2.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.2 | Euro-American | T;LAM | RD726 | 1.0 |
lineage4.6.2.2 | Euro-American (Cameroon) | LAM10-CAM | RD726 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrB | 6579 | p.Ser447Phe | missense_variant | 1.0 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.25 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 778298 | c.-692C>T | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.12 |
rpsA | 1833537 | c.-5A>T | upstream_gene_variant | 0.99 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2221746 | c.1416_1418dupCCG | disruptive_inframe_insertion | 0.98 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448567 | p.His22Asp | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4267272 | p.Lys522Arg | missense_variant | 1.0 |
ethR | 4326739 | c.-810G>C | upstream_gene_variant | 1.0 |
ethA | 4328004 | c.-531C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |