Rv0005 - p.Ser447Phe
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
3 HR-TB
0 MDR-TB
200 Pre-XDR-TB
6 XDR-TB
26 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 112 |
| lineage4.3.4.2 | 1 |
| lineage4.3.3 | 17 |
| lineage4.2.1 | 9 |
| lineage3 | 14 |
| lineage4.4 | 11 |
| lineage4.2.2.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.8 | 13 |
| lineage2.2.2 | 15 |
| lineage4.1.1.3 | 19 |
| lineage4.6.2.2 | 3 |
| lineage4.1.1.3;lineage4.1.2 | 2 |
| lineage4.5 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.1.2.1 | 4 |
| lineage1.1.1.1;lineage2.2.1 | 1 |
| lineage4.2.2 | 3 |
| lineage3.1.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.2.1.1 | 2 |
| lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 235 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR133901 | Pre-XDR-TB | lineage2.2.1 | ru | ERR2516572 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR2516492 | Pre-XDR-TB | lineage4.3.3 | pe | SRR1173844 | Pre-XDR-TB | lineage2.2.1 | None | SRR14802125 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782458 | Pre-XDR-TB | lineage4.2.1 | None | SRR21662809 | Other | lineage3 | None | SRR3587411 | Other | lineage4.4 | None | SRR3587417 | Other | lineage4.4 | None | SRR3587418 | Other | lineage4.4 | None | SRR14801693 | Pre-XDR-TB | lineage4.2.1 | None | ERR11773826 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864134 | Pre-XDR-TB | lineage2.2.1 | None | ERR13259964 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR29081664 | Pre-XDR-TB | lineage4.3.3 | None | SRR16088167 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069396 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864129 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045148 | Other | lineage3.1.2.1 | None | ERR4799456 | Pre-XDR-TB | lineage2.2.1 | in | SRR10397209 | Pre-XDR-TB | lineage2.2.1 | None | SRR6485055 | HR-TB | lineage4.8 | None | ERR4808875 | Pre-XDR-TB | lineage2.2.2 | za | SRR18002993 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992797 | XDR-TB | lineage2.2.2 | None | ERR5864109 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865187 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801316 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865399 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165336 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29081571 | Pre-XDR-TB | lineage4.3.3 | None | ERR2027218 | Other | lineage4.6.2.2 | None | SRR27450510 | HR-TB | lineage2.2.1 | None | ERR5864136 | Pre-XDR-TB | lineage2.2.1 | None | ERR13288889 | Pre-XDR-TB | lineage2.2.2 | None | ERR5864125 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | ERR5864107 | Pre-XDR-TB | lineage2.2.1 | None | SRR18714990 | Pre-XDR-TB | lineage2.2.1 | None | SRR10851704 | Pre-XDR-TB | lineage4.1.1.3;lineage4.1.2 | None | SRR13232726 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864131 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153254 | Pre-XDR-TB | lineage2.2.1 | None | SRR29056277 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5864124 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865186 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397199 | Pre-XDR-TB | lineage2.2.1 | None | ERR3335803 | Pre-XDR-TB | lineage3 | pk | ERR2510274 | Pre-XDR-TB | lineage3 | pk | ERR2510453 | Pre-XDR-TB | lineage4.8 | pk | ERR4831525 | Pre-XDR-TB | lineage3 | pk | ERR688043 | Pre-XDR-TB | lineage4.8 | pk | SRR29289136 | Pre-XDR-TB | lineage4.5 | None | ERR4797349 | Pre-XDR-TB | lineage4.8 | in | SRR5152923 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153226 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864111 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798198 | Pre-XDR-TB | lineage4.3.3 | in | SRR16156824 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR3587409 | Other | lineage4.4 | None | SRR29056301 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02403532 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR8651663 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1166321 | Pre-XDR-TB | lineage4.8 | ro | SAMN02628490 | Pre-XDR-TB | lineage2.2.1 | ir | ERR5865401 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828091 | Pre-XDR-TB | lineage2.2.1 | None | ERR3287882 | Pre-XDR-TB | lineage4.3.3 | pe | ERR1034611 | Pre-XDR-TB | lineage4.8 | pk | SRR8423050 | Pre-XDR-TB | lineage2.2.1 | None | SRR28046133 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR7911386 | Pre-XDR-TB | lineage2.2.1 | us | ERR459445 | Pre-XDR-TB | lineage4.8 | None | SRR13232746 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515546 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR1049010 | Pre-XDR-TB | lineage2.2.2 | None | SRR1180995 | Pre-XDR-TB | lineage4.3.3 | None | SRR16370521 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715179 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035100 | Pre-XDR-TB | lineage2.2.1.1 | vn | SRR23861730 | Pre-XDR-TB | lineage2.2.1 | None | SRR23862047 | Pre-XDR-TB | lineage2.2.1 | None | SRR21732225 | Other | lineage2.2.1 | None | ERR7362026 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397094 | Pre-XDR-TB | lineage2.2.1 | None | ERR8774583 | Pre-XDR-TB | lineage2.2.1 | None | SRR1183963 | Pre-XDR-TB | lineage4.3.3 | None | ERR4813215 | Pre-XDR-TB | lineage4.3.3 | None | ERR5864113 | Pre-XDR-TB | lineage2.2.1 | None | SRR3085351 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR833212 | Other | lineage4.4 | None | ERR5865398 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831434 | Pre-XDR-TB | lineage3 | None | SRR3587410 | Other | lineage4.4 | None | SRR10869134 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1011497 | Other | lineage4.4 | None | ERR5864121 | Pre-XDR-TB | lineage2.2.1 | None | ERR8774234 | Pre-XDR-TB | lineage4.6.2.2 | None | SRR14807638 | Pre-XDR-TB | lineage4.3.3 | None | SRR10869252 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5864410 | Pre-XDR-TB | lineage2.2.1 | None | SRR27450312 | Other | lineage3 | None | ERR5864135 | Pre-XDR-TB | lineage2.2.1 | None | SRR1144783 | Pre-XDR-TB | lineage2.2.2 | None | SRR29274238 | Pre-XDR-TB | lineage4.8 | None | SRR21747043 | Pre-XDR-TB | lineage2.2.1 | None | SRR28119735 | Other | lineage2.2.1 | None | SRR22424933 | Pre-XDR-TB | lineage3 | None | ERR5864137 | Pre-XDR-TB | lineage2.2.1 | None | SRR23938640 | Pre-XDR-TB | lineage2.2.1 | None | SRR28046026 | Other | lineage3 | None | SRR3743391 | Pre-XDR-TB | lineage4.2.1 | None | SRR7592380 | Pre-XDR-TB | lineage4.8 | None | SRR22873602 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153222 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153253 | Pre-XDR-TB | lineage2.2.1 | None | SRR10380017 | HR-TB | lineage4.2.1 | None | SRR1173490 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864130 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828130 | Pre-XDR-TB | lineage2.2.1 | None | SRR29055545 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29081665 | Pre-XDR-TB | lineage4.3.3 | None | SRR13870390 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173456 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29231338 | Pre-XDR-TB | lineage4.1.1.3;lineage4.1.2 | None | SRR3587416 | Other | lineage4.4 | None | SRR29053495 | Other | lineage3 | None | SRR5152912 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093427 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13258450 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864138 | Pre-XDR-TB | lineage2.2.1 | None | SRR18054793 | Pre-XDR-TB | lineage2.2.2 | None | ERR5865184 | Pre-XDR-TB | lineage2.2.1 | None | ERR11067162 | Pre-XDR-TB | lineage4.2.1 | None | SRR6964499 | Other | lineage3 | None | ERR5864120 | Pre-XDR-TB | lineage2.2.1 | None | SRR29055798 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4797218 | Pre-XDR-TB | lineage2.2.1 | in | ERR11044849 | Pre-XDR-TB | lineage4.2.1 | None | ERR5864110 | Pre-XDR-TB | lineage2.2.1 | None | SRR29055542 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093214 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMN02360592 | Pre-XDR-TB | lineage2.2.2 | kr | SRR1049009 | Pre-XDR-TB | lineage2.2.2 | None | ERR4830347 | Other | lineage1.1.1.1;lineage2.2.1 | vn | ERR5865188 | Pre-XDR-TB | lineage2.2.1 | None | SRR28888054 | XDR-TB | lineage2.2.1 | None | SRR27069423 | Pre-XDR-TB | lineage2.2.1 | None | SRR28434984 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864105 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831433 | Pre-XDR-TB | lineage3 | None | ERR5865185 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810952 | Pre-XDR-TB | lineage4.2.2 | cn | ERR8665539 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975704 | XDR-TB | lineage2.2.2 | None | SRR21887776 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864118 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488887 | Pre-XDR-TB | lineage2.2.1 | None | SRR23861969 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864132 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153835 | Pre-XDR-TB | lineage4.2.1 | None | SAMN02419549 | Pre-XDR-TB | lineage4.3.3 | by | SRR5065642 | Other | lineage2.2.1 | vn | ERR5865397 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088264 | Pre-XDR-TB | lineage2.2.1 | None | ERR12796608 | Pre-XDR-TB | lineage3.1.2 | None | ERR4423620 | Pre-XDR-TB | lineage4.6.2.2 | None | SRR1013623 | Pre-XDR-TB | lineage2.2.2 | None | SRR29056192 | Other | lineage3 | None | ERR2510867 | Pre-XDR-TB | lineage4.1.2.1 | it | ERR5864411 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516005 | Pre-XDR-TB | lineage2.2.2 | za | SRR3587415 | Other | lineage4.4 | None | ERR13260236 | Pre-XDR-TB | lineage4.3.3 | None | DRR130070 | Pre-XDR-TB | lineage2.2.1 | None | SRR28706501 | Pre-XDR-TB | lineage2.2.1 | None | SRR3587412 | Other | lineage4.4 | None | SRR25207368 | Pre-XDR-TB | lineage4.2.2 | None | SRR1167260 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR3082112 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR14782680 | Pre-XDR-TB | lineage4.2.1 | None | SRR28514694 | Other | lineage4.1.1.1 | None | ERR5864123 | Pre-XDR-TB | lineage2.2.1 | None | SRR16087911 | Pre-XDR-TB | lineage4.2.1.1 | None | SRR29056112 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11773818 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273644 | Pre-XDR-TB | lineage4.8 | None | SRR16088398 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798668 | Pre-XDR-TB | lineage4.2.1 | None | SRR7516359 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274259 | Pre-XDR-TB | lineage4.8 | None | SRR1013624 | Pre-XDR-TB | lineage2.2.2 | None | SRR16088219 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864119 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262169 | XDR-TB | lineage3 | None | ERR5864117 | Pre-XDR-TB | lineage2.2.1 | None | SRR28240245 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488346 | Pre-XDR-TB | lineage2.2.1 | None | SRR11348156 | Pre-XDR-TB | lineage1.1.2 | None | ERR13276028 | Pre-XDR-TB | lineage2.2.1 | None | ERR459444 | Pre-XDR-TB | lineage4.8 | None | SRR7782648 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5865400 | Pre-XDR-TB | lineage2.2.1 | None | ERR13273259 | Pre-XDR-TB | lineage2.2.1 | None | SRR26400042 | Other | lineage4.2.2 | None | SRR29093974 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29055524 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR26399902 | Other | lineage2.2.1 | None | SRR1173876 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR6485022 | Pre-XDR-TB | lineage4.2.1.1 | None | SRR23861749 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864112 | Pre-XDR-TB | lineage2.2.1 | None | SRR25534201 | Pre-XDR-TB | lineage2.2.1 | None | SRR29914424 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798656 | Pre-XDR-TB | lineage2.2.1 | in | ERR11488862 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4799333 | Pre-XDR-TB | lineage3 | in | ERR5864133 | Pre-XDR-TB | lineage2.2.1 | None | SRR9738493 | Pre-XDR-TB | lineage4.8 | None | ERR5864122 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864139 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02398713 | Pre-XDR-TB | lineage2.2.2 | kr | SRR29093950 | Pre-XDR-TB | lineage2.2.2 | None | SRR28888046 | XDR-TB | lineage2.2.1 | None | ERR3287437 | Pre-XDR-TB | lineage4.3.3 | pe | ERR12916908 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397133 | Pre-XDR-TB | lineage2.2.1 | None | SRR28888059 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911403 | Pre-XDR-TB | lineage2.2.1 | us | ERR7911404 | Pre-XDR-TB | lineage2.2.1 | us | ERR8665973 | Pre-XDR-TB | lineage4.3.3 | None | ERR8665972 | Pre-XDR-TB | lineage4.3.3 | None | ERR11773752 | Pre-XDR-TB | lineage4.3.3 | None | SRR3587414 | Other | lineage4.4 | None | SRR24709983 | XDR-TB | lineage2.2.1 | None |
|---|
