Run ID: SRR18003051
Sample name:
Date: 03-04-2023 19:15:59
Number of reads: 2417553
Percentage reads mapped: 43.77
Strain: lineage2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.13 | kanamycin, capreomycin, aminoglycosides, amikacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471654 | n.-192A>G | upstream_gene_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473270 | n.1425G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475869 | n.2212C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475937 | n.2280A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476253 | n.2596A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476411 | n.2754G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476501 | n.2844C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.12 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290039 | c.-798C>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiA | 3640377 | c.-166G>A | upstream_gene_variant | 0.94 |
rpoA | 3878599 | c.-92C>G | upstream_gene_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |