EBG00000313339 - n.2844C>T
Drug resistance types
49 Sensitive
10 RR-TB
13 HR-TB
30 MDR-TB
6 Pre-XDR-TB
1 XDR-TB
61 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 18 |
| lineage2.2.1 | 19 |
| lineage4.4.2;lineage4.2.2;lineage2.2.1 | 1 |
| lineage4.5 | 2 |
| lineage4.3.2 | 4 |
| lineage4.8 | 9 |
| lineage4.4.1.1 | 11 |
| lineage3.1.1 | 4 |
| lineage1.1.2 | 7 |
| 1 | |
| lineage4.3.3 | 5 |
| lineage1.2.2.2 | 2 |
| lineage4.6.1 | 11 |
| lineage4.6.1.1 | 5 |
| lineage4.1.1 | 1 |
| lineage4.1.2.1 | 12 |
| lineage4.6.1.2 | 4 |
| lineage3 | 5 |
| lineage2.2.2 | 2 |
| lineage1.1.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.1.2 | 1 |
| lineage6.3.1 | 1 |
| lineage4 | 4 |
| lineage4.6.2.2 | 3 |
| lineage4.3.4.2.1 | 3 |
| lineage3.1.2 | 1 |
| lineage4.3.1.1 | 1 |
| lineage4.1.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.4 | 1 |
| La1.8.1 | 10 |
| lineage4.9;La1.8 | 1 |
| lineage4;La1.8.1 | 1 |
| La1.3 | 1 |
| lineage6.2.1 | 1 |
| lineage5.1.1 | 4 |
| lineage2.2 | 2 |
| lineage4.9;lineage2.2.1 | 2 |
| lineage4.6.1;lineage3.1.1 | 1 |
| lineage4.6.1;lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 170 |
Geographic prevalence
Country level data for this variant is available for 10 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16156814 | Sensitive | lineage4.9 | None | SRR15315871 | Sensitive | lineage4.9 | None | SRR16156291 | Other | lineage4.9 | None | SRR16157045 | Sensitive | lineage4.9 | None | SRR18002950 | MDR-TB | lineage2.2.1 | None | SRR18002873 | Pre-XDR-TB | lineage4.4.2;lineage4.2.2;lineage2.2.1 | None | SRR18002877 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002991 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002951 | Other | lineage4.5 | None | SRR18002971 | Other | lineage2.2.1 | None | SRR18002992 | Pre-XDR-TB | lineage2.2.1 | None | SRR21736381 | Sensitive | lineage4.3.2 | None | SRR18003051 | Other | lineage2.2.1 | None | SRR18003028 | Sensitive | lineage2.2.1 | None | SRR18003040 | MDR-TB | lineage2.2.1 | None | SRR18511647 | Sensitive | lineage2.2.1 | None | ERR4815193 | MDR-TB | lineage4.8 | None | ERR4815257 | HR-TB | lineage4.4.1.1 | None | ERR4815334 | Other | lineage3.1.1 | None | SAMN02598974 | Sensitive | lineage1.1.2 | None | SRR3105762 | HR-TB | None | ERR4814911 | Other | lineage4.3.3 | None | ERR4814697 | Sensitive | lineage4.4.1.1 | None | SAMN02381009 | MDR-TB | lineage4.4.1.1 | None | ERR4815517 | Other | lineage1.2.2.2 | None | SAMN02381037 | MDR-TB | lineage4.6.1 | None | SAMN02381005 | Other | lineage4.6.1.1 | None | ERR4814932 | Other | lineage4.1.1 | None | ERR4817194 | Other | lineage4.1.2.1 | None | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | ERR4816632 | Sensitive | lineage2.2.1 | None | ERR4815572 | Other | lineage4.1.2.1 | None | ERR4815909 | Other | lineage4.8 | None | ERR4816103 | Sensitive | lineage3 | gb | SRR6280216 | RR-TB | lineage2.2.2 | cn | ERR4817703 | Other | lineage1.1.1 | None | SRR4034391 | MDR-TB | lineage4.1.2.1 | None | SRR4033434 | Sensitive | lineage4.3.2.1 | None | ERR4816882 | Other | lineage4.8 | None | ERR4817294 | Other | lineage4.1.2 | None | SRR4033544 | Sensitive | lineage4.3.2.1 | None | ERR4818726 | Other | lineage4.1.2.1 | None | ERR4817976 | HR-TB | lineage4.1.2.1 | None | ERR4818440 | Other | lineage6.3.1 | None | ERR2510820 | Other | lineage4.8 | None | ERR2512630 | Other | lineage4.8 | gb | ERR4819217 | Other | lineage1.2.2.2 | None | ERR4818471 | Other | lineage2.2.1 | None | ERR4819131 | Other | lineage4 | None | ERR4819242 | HR-TB | lineage4.6.2.2 | None | ERR4819655 | Other | lineage4.8 | None | ERR4819423 | Other | lineage4.6.2.2 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4820728 | Sensitive | lineage3.1.1 | gb | ERR4820736 | Other | lineage4.1.2.1 | gb | SRR6280286 | Sensitive | lineage2.2.1 | None | ERR4820742 | Other | lineage4.3.4.2.1 | None | SAMN02598978 | HR-TB | lineage1.1.2 | None | ERR4819622 | Other | lineage4.1.2.1 | None | ERR4820829 | Other | lineage4.8 | None | ERR4821054 | Other | lineage3 | None | ERR4820614 | Other | lineage3.1.2 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR4820122 | Other | lineage4.3.1.1 | None | SAMN02381012 | MDR-TB | lineage4.4.1.1 | None | ERR4821849 | Other | lineage4.5 | gb | SAMN02381047 | Sensitive | lineage4.6.1 | None | ERR4821263 | Other | lineage4.1.3 | gb | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4821615 | Other | lineage4.8 | gb | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045312 | Other | lineage1.1.3.3 | None | SRR6045056 | Other | lineage2.2.1 | gb | ERR4828942 | Sensitive | lineage4.1.2.1 | it | ERR2851354 | RR-TB | lineage4.9 | None | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | ERR4829208 | RR-TB | lineage4.8 | None | ERR4872098 | MDR-TB | lineage4.1.4 | None | ERR5311084 | Other | La1.8.1 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | ERR5311087 | Other | La1.8.1 | None | SRR7535053 | Sensitive | lineage3 | None | SRR7131011 | Sensitive | lineage4.1.2.1 | None | SRR7535079 | Sensitive | lineage4.6.1.1 | None | SRR7535054 | Sensitive | lineage4.6.1 | None | SRR7535074 | Sensitive | lineage3 | None | SRR7535082 | Sensitive | lineage4 | None | SRR7535081 | Sensitive | lineage4.6.1.1 | None | ERR1023494 | Sensitive | lineage3 | None | SRR7645936 | Sensitive | lineage2.2.1 | None | ERR3468686 | Other | La1.8.1 | None | ERR10796559 | Other | lineage4.9 | None | ERR10796599 | Other | lineage4 | None | ERR3468584 | Sensitive | lineage4.9 | None | ERR3468612 | Other | La1.8.1 | None | ERR3468619 | HR-TB | lineage4.9;La1.8 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR3468578 | Other | La1.8.1 | None | ERR3468615 | Other | La1.8.1 | None | ERR3468659 | Other | lineage4.9 | None | ERR405186 | Sensitive | lineage4.3.4.2.1 | None | ERR405191 | Other | lineage4.9 | None | ERR405215 | Sensitive | lineage2.2.1 | None | ERR405194 | Sensitive | lineage4.1.2.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR405190 | Sensitive | lineage4.9 | None | ERR405216 | Sensitive | lineage3.1.1 | None | ERR405217 | Sensitive | lineage2.2.1 | None | ERR4188208 | Other | La1.8.1 | None | ERR4178291 | Sensitive | lineage4.3.2 | None | ERR4188033 | Other | lineage4;La1.8.1 | None | ERR4596937 | Sensitive | lineage1.1.2 | None | ERR4596906 | Sensitive | lineage1.1.2 | None | ERR4188215 | Other | La1.8.1 | None | ERR5908213 | Sensitive | lineage4.3.3 | None | ERR4772207 | Other | La1.3 | None | ERR4627307 | Other | La1.8.1 | None | ERR4627391 | Other | La1.8.1 | None | ERR5908229 | Sensitive | lineage4.3.3 | None | ERR6197032 | Other | lineage4.9 | None | ERR5987249 | MDR-TB | lineage4.3.2 | None | ERR6865895 | Sensitive | lineage4.3.2 | None | ERR751332 | Sensitive | lineage6.2.1 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | ERR751336 | Sensitive | lineage5.1.1 | None | ERR751329 | Sensitive | lineage5.1.1 | None | ERR751338 | Other | lineage5.1.1 | None | SRR1013528 | Pre-XDR-TB | lineage2.2 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR983241 | MDR-TB | lineage2.2.1 | None | SRR1013530 | HR-TB | lineage4.9 | None | SRR1049622 | MDR-TB | lineage4.4.1.1 | None | SRR1013527 | RR-TB | lineage2.2 | None | SRR1049723 | MDR-TB | lineage4.6.1 | None | SRR1049629 | MDR-TB | lineage4.4.1.1 | None | SRR1049630 | MDR-TB | lineage4.4.1.1 | None | SRR1049623 | MDR-TB | lineage4.4.1.1 | None | SRR1049724 | MDR-TB | lineage4.6.1 | None | SRR1049752 | RR-TB | lineage4.6.1.2 | None | SRR1049743 | Sensitive | lineage4.6.1 | None | SRR1049751 | RR-TB | lineage4.6.1.2 | None | SRR1049744 | Sensitive | lineage4.6.1 | None | SRR1062864 | Sensitive | lineage4.9;lineage2.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062865 | HR-TB | lineage2.2.2 | None | SRR1062867 | RR-TB | lineage4.9;lineage2.2.1 | None | SRR1062868 | HR-TB | lineage4.9 | None | SRR1062869 | Pre-XDR-TB | lineage4.9 | None | SRR1062895 | Other | lineage4.6.1.1 | None | SRR1062933 | Sensitive | lineage4.9 | None | SRR1062897 | MDR-TB | lineage4.4.1.1 | None | SRR1062902 | MDR-TB | lineage4.4.1.1 | None | SRR1062927 | MDR-TB | lineage4.6.1 | None | SRR1106670 | Other | lineage4.9 | None | SRR1062937 | HR-TB | lineage4.6.1 | None | SRR11342667 | MDR-TB | lineage4.3.3 | None | SRR11349133 | MDR-TB | lineage4.3.3 | None | SRR1173293 | MDR-TB | lineage4.6.1;lineage3.1.1 | None | SRR1140627 | Other | lineage4.6.1 | None | SRR1140723 | Sensitive | lineage4.6.1.1 | None | SRR1140751 | MDR-TB | lineage4.4.1.1 | None | SRR1141261 | MDR-TB | lineage4.9 | None | SRR1140586 | HR-TB | lineage4.9 | None | SRR1140677 | MDR-TB | lineage4.6.1 | None | SRR1140740 | RR-TB | lineage4.6.1.2 | None | SRR1173565 | MDR-TB | lineage4.6.1;lineage3.1 | None | SRR1173772 | Sensitive | lineage1.1.2 | None | SRR1173566 | Other | lineage1.1.2 | None | SRR1173799 | MDR-TB | lineage3.1.1 | None | SRR1174291 | HR-TB | lineage1.1.2 | None |
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