Run ID: SRR1062933
Sample name:
Date: 02-04-2023 18:41:22
Number of reads: 58649
Percentage reads mapped: 2.17
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoB | 760769 | c.963C>T | synonymous_variant | 0.67 |
rpoC | 762887 | c.-483G>C | upstream_gene_variant | 0.67 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 0.88 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 1.0 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 1.0 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 1.0 |
rpoB | 762925 | p.Thr1040Ile | missense_variant | 1.0 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 1.0 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 1.0 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 1.0 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.88 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.88 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.75 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.8 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.8 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.8 |
rpoC | 764587 | c.1218C>G | synonymous_variant | 1.0 |
rpoC | 764605 | c.1236G>C | synonymous_variant | 1.0 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 1.0 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 1.0 |
rpoC | 764641 | c.1272C>T | synonymous_variant | 1.0 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 1.0 |
rpoC | 764663 | p.Val432Thr | missense_variant | 1.0 |
rpoC | 764668 | c.1299C>T | synonymous_variant | 0.88 |
rpoC | 764672 | p.Gln435Glu | missense_variant | 0.88 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.88 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 0.67 |
rpoC | 767034 | p.Ser1222* | stop_gained | 1.0 |
fbiC | 1304316 | c.1386G>T | synonymous_variant | 1.0 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472264 | n.419T>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472266 | n.421C>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472277 | n.432C>G | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472284 | n.439C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472333 | n.488G>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472338 | n.493A>C | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472349 | n.504A>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472374 | n.529T>G | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472382 | n.537G>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472391 | n.546C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472412 | n.567A>C | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472415 | n.570T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472422 | n.577T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472714 | n.869A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472715 | n.870C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472770 | n.925C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472812 | n.967A>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472826 | n.981G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473162 | n.1317C>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473163 | n.1318C>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473164 | n.1319C>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473223 | n.1378G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475790 | n.2133C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475791 | n.2134A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.94 |
rrl | 1475892 | n.2235A>C | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476336 | n.2679C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476357 | n.2700T>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476368 | n.2711T>C | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476491 | n.2834T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476501 | n.2844C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 1.0 |
katG | 2154188 | p.Pro642Ser | missense_variant | 1.0 |
clpC1 | 4039496 | p.Ile403Met | missense_variant | 1.0 |
clpC1 | 4039526 | c.1179G>C | synonymous_variant | 1.0 |
clpC1 | 4039533 | p.Asn391Thr | missense_variant | 1.0 |
clpC1 | 4039546 | p.Asp387Asn | missense_variant | 1.0 |
clpC1 | 4039549 | p.Ala386Ser | missense_variant | 1.0 |
clpC1 | 4039559 | c.1146C>G | synonymous_variant | 1.0 |
clpC1 | 4039562 | c.1143C>G | synonymous_variant | 1.0 |
clpC1 | 4039570 | p.Met379Leu | missense_variant | 1.0 |
clpC1 | 4039574 | p.Ala377Gly | missense_variant | 1.0 |
clpC1 | 4039586 | c.1119G>C | synonymous_variant | 1.0 |
aftB | 4268188 | p.Gly217Cys | missense_variant | 1.0 |