EBG00000313325 - n.421C>A
Drug resistance types
27 Sensitive
4 RR-TB
58 HR-TB
43 MDR-TB
34 Pre-XDR-TB
0 XDR-TB
11 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage6.2.1 | 1 |
| lineage5.1.1 | 4 |
| lineage4.9 | 13 |
| lineage5.1.2 | 1 |
| lineage2.2 | 23 |
| lineage2.2.2 | 20 |
| lineage2.2.1 | 33 |
| lineage3 | 9 |
| 11 | |
| lineage2.2.1.1 | 4 |
| lineage4 | 4 |
| lineage4;lineage2.2.2 | 1 |
| lineage4.4.2 | 2 |
| lineage2.2.2;lineage2.2.1 | 2 |
| lineage4.5 | 3 |
| lineage4.9;lineage2 | 2 |
| lineage4.4.1.1 | 9 |
| lineage4.6.1.2 | 5 |
| lineage4.6.1 | 10 |
| lineage4.8.1 | 2 |
| lineage4.3.3 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage4.6.1.1 | 3 |
| lineage4.6.1;lineage3.1.1 | 1 |
| lineage4.4 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.6.1;lineage3.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.6.5 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 177 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR751332 | Sensitive | lineage6.2.1 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | ERR751329 | Sensitive | lineage5.1.1 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR751336 | Sensitive | lineage5.1.1 | None | ERR751339 | Sensitive | lineage5.1.2 | None | ERR751338 | Other | lineage5.1.1 | None | SRR1013568 | Pre-XDR-TB | lineage2.2 | None | SRR1013554 | Pre-XDR-TB | lineage2.2 | None | SRR1013553 | Pre-XDR-TB | lineage2.2 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013581 | Pre-XDR-TB | lineage2.2 | None | SRR1013577 | MDR-TB | lineage2.2 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013595 | HR-TB | lineage3 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1013596 | HR-TB | lineage3 | None | SRR1013583 | HR-TB | lineage2.2 | None | SRR1013584 | HR-TB | lineage2.2 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013598 | HR-TB | None | SRR1013597 | HR-TB | lineage2.2 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013600 | HR-TB | lineage2.2.1.1 | None | SRR1013599 | HR-TB | None | SRR1013607 | HR-TB | lineage2.2 | None | SRR1013608 | HR-TB | lineage2.2 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013613 | HR-TB | lineage2.2.1 | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013614 | HR-TB | lineage2.2 | None | SRR1013618 | MDR-TB | None | SRR1013612 | HR-TB | lineage4 | None | SRR1013617 | MDR-TB | None | SRR1013622 | Pre-XDR-TB | lineage2.2 | None | SRR1013621 | Pre-XDR-TB | lineage2.2 | None | SRR1013630 | Pre-XDR-TB | lineage2.2 | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR1013633 | MDR-TB | lineage2.2 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1013634 | MDR-TB | lineage2.2 | None | SRR1048853 | Pre-XDR-TB | lineage4;lineage2.2.2 | None | SRR1048852 | Pre-XDR-TB | lineage4.9 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048870 | Pre-XDR-TB | lineage2.2 | None | SRR1048869 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048886 | MDR-TB | lineage2.2 | None | SRR1048885 | MDR-TB | None | SRR1048966 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048969 | MDR-TB | lineage2.2.2 | None | SRR1048968 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048982 | HR-TB | None | SRR1048980 | HR-TB | lineage3 | None | SRR1048988 | HR-TB | lineage2.2 | None | SRR1048983 | HR-TB | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1048991 | HR-TB | lineage2.2.2 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1048992 | HR-TB | lineage2.2.2 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1048996 | HR-TB | lineage4.5 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1049007 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049004 | MDR-TB | lineage2.2.2 | None | SRR1049006 | MDR-TB | lineage2.2.2 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SRR1049027 | Pre-XDR-TB | None | SRR1049023 | HR-TB | lineage2.2 | None | SRR1049022 | HR-TB | lineage4.9;lineage2 | None | SRR1049026 | Pre-XDR-TB | None | SRR1049622 | MDR-TB | lineage4.4.1.1 | None | SRR1049041 | MDR-TB | None | SRR1049040 | MDR-TB | lineage2.2.1 | None | SRR1049630 | MDR-TB | lineage4.4.1.1 | None | SRR1049629 | MDR-TB | lineage4.4.1.1 | None | SRR1049623 | MDR-TB | lineage4.4.1.1 | None | SRR1049752 | RR-TB | lineage4.6.1.2 | None | SRR1049723 | MDR-TB | lineage4.6.1 | None | SRR1049724 | MDR-TB | lineage4.6.1 | None | SRR1049743 | Sensitive | lineage4.6.1 | None | SRR1049744 | Sensitive | lineage4.6.1 | None | SRR1049751 | RR-TB | lineage4.6.1.2 | None | SRR11349134 | Pre-XDR-TB | lineage4.8.1 | None | SRR1062902 | MDR-TB | lineage4.4.1.1 | None | SRR1062927 | MDR-TB | lineage4.6.1 | None | SRR1062937 | HR-TB | lineage4.6.1 | None | SRR11342667 | MDR-TB | lineage4.3.3 | None | SRR11349133 | MDR-TB | lineage4.3.3 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062895 | Other | lineage4.6.1.1 | None | SRR1062933 | Sensitive | lineage4.9 | None | SRR1062941 | MDR-TB | lineage4.6.1.2 | None | SRR11342675 | Pre-XDR-TB | lineage4.8.1 | None | SRR1140586 | HR-TB | lineage4.9 | None | SRR1140677 | MDR-TB | lineage4.6.1 | None | SRR1140627 | Other | lineage4.6.1 | None | SRR1140751 | MDR-TB | lineage4.4.1.1 | None | SRR1140723 | Sensitive | lineage4.6.1.1 | None | SRR1140740 | RR-TB | lineage4.6.1.2 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173293 | MDR-TB | lineage4.6.1;lineage3.1.1 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1172713 | MDR-TB | lineage4.4 | None | SRR13180283 | Sensitive | lineage4.1.2.1 | None | SRR1173832 | MDR-TB | lineage4.6.1;lineage3.1 | None | SRR1173335 | Sensitive | lineage4.9 | None | SRR1173416 | Other | lineage4.9 | None | ERR8025506 | Pre-XDR-TB | lineage2.2.2 | None | SRR16100231 | Sensitive | lineage4 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR17567930 | Other | lineage4.4.1.1 | None | SRR19303792 | Sensitive | lineage4.1.2.1 | None | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | ERR2446544 | Sensitive | lineage3 | nl | SAMN02381005 | Other | lineage4.6.1.1 | None | SAMN02381037 | MDR-TB | lineage4.6.1 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02381009 | MDR-TB | lineage4.4.1.1 | None | ERR192070 | Other | None | ERR3275548 | Sensitive | lineage3 | nl | SAMN02360571 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR3742667 | Sensitive | lineage4.9 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | SAMN02360577 | HR-TB | lineage3 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | ERR4818009 | Sensitive | lineage2.2.1.1 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | ERR4818444 | Other | lineage4.6.5 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517457 | Sensitive | lineage3 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SAMN02381012 | MDR-TB | lineage4.4.1.1 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SAMN02381047 | Sensitive | lineage4.6.1 | None | ERR4821550 | Other | lineage2.2.1 | None | SRR6046395 | HR-TB | lineage4.9 | None | SRR6046306 | Sensitive | lineage4.3.4.2.1 | None | ERR501639 | Sensitive | lineage4.9;lineage2 | None | ERR4829238 | Sensitive | lineage3 | None | ERR4832007 | MDR-TB | lineage2.2.1.1 | None | SRR6046834 | Sensitive | lineage4.9 | None | ERR4831837 | MDR-TB | lineage2.2.1 | None | ERR4831839 | MDR-TB | lineage2.2.1 | None | ERR4831798 | HR-TB | lineage2.2.1 | vn | ERR3283015 | Sensitive | lineage4.9 | None | SRR7131160 | Sensitive | lineage3 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR473279 | Other | lineage4.9 | None | ERR4811896 | HR-TB | lineage4.3.2 | pe |
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