EBG00000313325 - n.421C>A
Drug resistance types
35 Sensitive
6 RR-TB
33 HR-TB
20 MDR-TB
14 Pre-XDR-TB
0 XDR-TB
4 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.4.1.1 | 8 |
| lineage4.3.4.2.1 | 2 |
| lineage2.2.2;lineage4 | 5 |
| lineage2.2.2 | 19 |
| lineage4.6.1.2 | 3 |
| lineage4.6.1.1 | 11 |
| lineage5.1.1 | 4 |
| lineage2.2.1 | 19 |
| lineage4.9 | 8 |
| lineage3 | 6 |
| lineage4 | 3 |
| lineage2.2.1;lineage2.2.2 | 4 |
| lineage4.3.4.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage2.2;lineage4 | 2 |
| lineage4.3.3 | 2 |
| lineage4.1.2.1 | 1 |
| lineage2.2.1.1;lineage4 | 1 |
| lineage5.1.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2 | 1 |
| lineage4.5 | 2 |
| lineage2.2.1.1 | 2 |
| lineage4.8.1 | 2 |
| lineage6.2.1 | 1 |
| lineage2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 112 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR17567930 | Sensitive | lineage4.4.1.1 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | SRR1013553 | MDR-TB | lineage2.2.2 | None | SAMN02381012 | MDR-TB | lineage4.4.1.1 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013568 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049752 | RR-TB | lineage4.6.1.2 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | SAMN02381009 | MDR-TB | lineage4.4.1.1 | None | SRR1049629 | MDR-TB | lineage4.4.1.1 | None | SRR1140627 | Sensitive | lineage4.6.1.1 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | SRR1140723 | Sensitive | lineage4.6.1.1 | None | ERR751336 | Sensitive | lineage5.1.1 | None | SAMN02381005 | Sensitive | lineage4.6.1.1 | None | SAMN02381037 | MDR-TB | lineage4.6.1.1 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | ERR473279 | Other | lineage4.9 | None | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | ERR3275548 | Sensitive | lineage3 | nl | SRR7131160 | Sensitive | lineage3 | None | SRR1013609 | Sensitive | lineage4 | None | ERR192070 | Sensitive | lineage4.9 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1049751 | RR-TB | lineage4.6.1.2 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | SRR1013584 | HR-TB | lineage2.2.2 | None | SRR1013617 | Sensitive | lineage2.2.1;lineage4 | None | SRR1049622 | MDR-TB | lineage4.4.1.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SRR1013581 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013610 | Sensitive | lineage4 | None | SRR1140586 | Sensitive | lineage4.9 | None | SRR1062902 | MDR-TB | lineage4.4.1.1 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | ERR4829238 | Sensitive | lineage3 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | SRR1049723 | MDR-TB | lineage4.6.1.1 | None | SRR1049736 | Sensitive | lineage4.9 | None | SRR11349133 | MDR-TB | lineage4.3.3 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | SRR1013618 | RR-TB | lineage2.2.1;lineage4 | None | ERR751339 | Sensitive | lineage5.1.2 | None | SRR1013634 | MDR-TB | lineage2.2.2 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1049623 | MDR-TB | lineage4.4.1.1 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR1062933 | Sensitive | lineage4.9 | None | SRR1062937 | Sensitive | lineage4.6.1.1 | None | ERR4831798 | HR-TB | lineage2.2.1 | vn | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1049630 | MDR-TB | lineage4.4.1.1 | None | ERR4831839 | MDR-TB | lineage2.2.1 | None | SRR1013633 | MDR-TB | lineage2.2.2 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | SRR1049040 | HR-TB | lineage2 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048993 | HR-TB | lineage4.9 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SRR1013578 | HR-TB | lineage2.2.2;lineage4 | None | SRR1048886 | HR-TB | lineage2.2.2;lineage4 | None | ERR2517457 | Sensitive | lineage3 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049724 | MDR-TB | lineage4.6.1.1 | None | SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SAMN02381047 | Sensitive | lineage4.6.1.1 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | ERR2446544 | Sensitive | lineage3 | nl | SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None | ERR751329 | Sensitive | lineage5.1.1 | None | SRR1013612 | Sensitive | lineage4.5 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | ERR751317 | Sensitive | lineage4.9 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013583 | Sensitive | lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1049743 | Sensitive | lineage4.6.1.1 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | SRR1062895 | Sensitive | lineage4.6.1.1 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013608 | Sensitive | lineage2.2.2 | None | SRR11342675 | Pre-XDR-TB | lineage4.8.1 | None | SRR11342667 | MDR-TB | lineage4.3.3 | None | SRR1049744 | Sensitive | lineage4.6.1.1 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR751332 | Sensitive | lineage6.2.1 | None | ERR4831837 | MDR-TB | lineage2.2.1 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | SRR16100231 | Other | lineage4 | None | SRR1049735 | Sensitive | lineage4.9 | None | SRR11349134 | Pre-XDR-TB | lineage4.8.1 | None | SRR1013600 | Sensitive | lineage2.2.1.1 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | ERR751338 | Other | lineage5.1.1 | None | SRR1048853 | HR-TB | lineage2;lineage4.9 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None |
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