EBG00000313325 - n.546C>T
Drug resistance types
63 Sensitive
15 RR-TB
18 HR-TB
34 MDR-TB
9 Pre-XDR-TB
1 XDR-TB
46 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.7 | 1 |
| lineage4.6.1.1 | 6 |
| lineage4.4.1.1 | 8 |
| La1.8.1 | 3 |
| lineage4.6.1 | 12 |
| lineage3 | 6 |
| lineage4.8 | 8 |
| lineage4.9 | 36 |
| lineage2.2.1 | 16 |
| 9 | |
| lineage4.3.3 | 9 |
| lineage4.1.2 | 4 |
| lineage4.1.2.1 | 9 |
| lineage4.2.1 | 2 |
| lineage3.1.1 | 1 |
| lineage4.3.4.2.1 | 5 |
| lineage4.3.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.6 | 2 |
| lineage4.6.1.2 | 5 |
| lineage4 | 5 |
| lineage4.3.4.1 | 1 |
| lineage4.2.2.1 | 1 |
| lineage4.9;La1.8.1 | 1 |
| lineage4;lineage3.1 | 1 |
| La1.7.1 | 1 |
| lineage1.1.2 | 2 |
| lineage4.3.4.2 | 2 |
| lineage4.6.4 | 1 |
| lineage5.1.1 | 2 |
| lineage4.1.1.3 | 4 |
| lineage2.2 | 4 |
| lineage2.2.1.1 | 3 |
| lineage4.9;lineage2.2.1 | 2 |
| lineage3.1.2.1 | 3 |
| lineage4.9;lineage4.2.1 | 1 |
| lineage4.6.1;lineage3.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage1 | 1 |
| lineage2.2.2 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.1.1 | 1 |
| lineage1.1.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 186 |
Geographic prevalence
Country level data for this variant is available for 10 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4820819 | Sensitive | lineage4.7 | gb | ERR4821879 | Other | lineage4.6.1.1 | None | ERR1873459 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR5382721 | Other | La1.8.1 | None | SAMN02381047 | Sensitive | lineage4.6.1 | None | SRR5431794 | Other | La1.8.1 | None | ERR4829202 | Sensitive | lineage3 | None | ERR4821167 | Other | lineage4.8 | gb | SRR6046152 | Other | lineage4.9 | None | SRR6044883 | Sensitive | lineage2.2.1 | gb | SRR6045162 | Sensitive | lineage4.9 | None | SRR6045379 | Other | None | ERR4822049 | Sensitive | lineage4.3.3 | None | ERR4829196 | Other | lineage4.1.2 | None | ERR4830705 | Sensitive | lineage4.1.2.1 | dz | ERR4829634 | Sensitive | lineage4.3.3 | it | ERR4829710 | MDR-TB | lineage4.2.1 | it | ERR502942 | Sensitive | lineage4.9 | None | SRR6046766 | Other | lineage3.1.1 | None | SRR6785282 | Other | lineage4.3.3 | None | SRR6896534 | Sensitive | None | ERR4829010 | MDR-TB | lineage2.2.1 | it | ERR3078008 | MDR-TB | lineage4.6.1 | None | ERR1199062 | Sensitive | lineage4.6.1.1 | ug | ERR4872269 | XDR-TB | lineage2.2.1 | None | SRR6855896 | Other | lineage4.3.4.2.1 | None | ERR323035 | Sensitive | lineage4.9 | None | SRR7131035 | Sensitive | lineage4.8 | None | SRR7131018 | Sensitive | lineage4.3.1 | None | SRR7131053 | Other | lineage2.2.1 | None | SRR7453031 | Sensitive | lineage2.2.1.2 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131156 | Other | lineage4.6 | None | SRR7131296 | Other | lineage4.3.3 | None | SRR7131114 | Other | lineage4.1.2 | None | SRR7131122 | Other | lineage2.2.1 | None | SRR7131129 | Sensitive | lineage4.1.2.1 | None | SRR7131160 | Sensitive | lineage3 | None | SRR7131169 | Other | lineage4.1.2.1 | None | SRR7131240 | Sensitive | lineage4.8 | None | SRR7535074 | Sensitive | lineage3 | None | SRR7535054 | Sensitive | lineage4.6.1 | None | SRR7535053 | Sensitive | lineage3 | None | ERR3283015 | Sensitive | lineage4.9 | None | SRR7535077 | MDR-TB | lineage4.6.1.2 | None | SRR7535079 | Sensitive | lineage4.6.1.1 | None | SRR7645936 | Sensitive | lineage2.2.1 | None | SRR7755706 | MDR-TB | lineage4.2.1 | None | ERR323057 | Sensitive | lineage4.9 | None | ERR10796627 | Other | lineage4 | None | SRR7535080 | HR-TB | lineage4.8 | None | SRR8600288 | Other | La1.8.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796625 | RR-TB | lineage4.4.1.1 | None | ERR10796630 | HR-TB | None | ERR405191 | Other | lineage4.9 | None | ERR3283034 | Sensitive | lineage4.9 | None | ERR4407557 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR405190 | Sensitive | lineage4.9 | None | ERR405217 | Sensitive | lineage2.2.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR4188072 | Other | lineage4.9;La1.8.1 | None | ERR405222 | Sensitive | lineage4;lineage3.1 | None | ERR4450934 | Other | La1.7.1 | None | ERR473279 | Other | lineage4.9 | None | ERR473311 | Sensitive | lineage4.9 | None | ERR5979784 | Sensitive | lineage4.9 | None | ERR5908213 | Sensitive | lineage4.3.3 | None | ERR5908229 | Sensitive | lineage4.3.3 | None | ERR473340 | Sensitive | lineage1.1.2 | None | ERR5979787 | Other | lineage4.9 | None | ERR6197043 | MDR-TB | lineage4.3.4.2 | None | ERR736850 | Sensitive | lineage4.9 | None | ERR702437 | HR-TB | lineage4.6.4 | None | ERR6359073 | Sensitive | lineage4.9 | None | ERR736825 | Sensitive | lineage4.9 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR751338 | Other | lineage5.1.1 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR773804 | Sensitive | lineage4.9 | None | ERR9119098 | Sensitive | lineage4.3.3 | None | ERR970448 | RR-TB | lineage4.1.1.3 | None | ERR970453 | RR-TB | lineage4.1.2 | None | SRR1013528 | Pre-XDR-TB | lineage2.2 | None | ERR970457 | RR-TB | lineage4.1.1.3 | None | ERR970455 | RR-TB | lineage4.1.2 | None | ERR972801 | RR-TB | lineage2.2.1.1 | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013530 | HR-TB | lineage4.9 | None | SRR1013577 | MDR-TB | lineage2.2 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1049622 | MDR-TB | lineage4.4.1.1 | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR1049623 | MDR-TB | lineage4.4.1.1 | None | SRR1049723 | MDR-TB | lineage4.6.1 | None | SRR1049630 | MDR-TB | lineage4.4.1.1 | None | SRR1049751 | RR-TB | lineage4.6.1.2 | None | SRR1049724 | MDR-TB | lineage4.6.1 | None | SRR1049743 | Sensitive | lineage4.6.1 | None | SRR1062867 | RR-TB | lineage4.9;lineage2.2.1 | None | SRR1062864 | Sensitive | lineage4.9;lineage2.2.1 | None | SRR1049752 | RR-TB | lineage4.6.1.2 | None | SRR1062868 | HR-TB | lineage4.9 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062869 | Pre-XDR-TB | lineage4.9 | None | SRR1062895 | Other | lineage4.6.1.1 | None | SRR1106670 | Other | lineage4.9 | None | SRR1062898 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062933 | Sensitive | lineage4.9 | None | SRR1062927 | MDR-TB | lineage4.6.1 | None | SRR1062937 | HR-TB | lineage4.6.1 | None | SRR1140586 | HR-TB | lineage4.9 | None | SRR1140740 | RR-TB | lineage4.6.1.2 | None | SRR1140627 | Other | lineage4.6.1 | None | SRR1140677 | MDR-TB | lineage4.6.1 | None | SRR1140723 | Sensitive | lineage4.6.1.1 | None | SRR1140751 | MDR-TB | lineage4.4.1.1 | None | SRR1140750 | MDR-TB | lineage4.3.4.2.1 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173310 | MDR-TB | None | SRR1141261 | MDR-TB | lineage4.9 | None | SRR1166181 | MDR-TB | lineage4 | None | SRR1172751 | HR-TB | lineage3.1.2.1 | None | SRR1173190 | Sensitive | lineage4.9 | None | SRR1173269 | Sensitive | lineage4.9 | None | SRR1168955 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR1173139 | Sensitive | lineage4.9 | None | SRR1173508 | Sensitive | lineage4.9 | None | SRR1173343 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173705 | Other | lineage4.9 | None | SRR1175173 | HR-TB | lineage3.1.2.1 | None | SRR1173832 | MDR-TB | lineage4.6.1;lineage3.1 | None | SRR1173768 | Sensitive | lineage4.9 | None | SRR1173865 | Sensitive | lineage4.9 | None | SRR11972157 | MDR-TB | lineage2.2.1 | None | SRR11972169 | HR-TB | lineage2.2 | None | SRR11972159 | MDR-TB | lineage2.2.1 | None | SRR11972166 | Sensitive | lineage1.1.3.1 | None | SRR11972164 | MDR-TB | lineage2.2.1.1 | None | SRR11972165 | MDR-TB | lineage2.2.1.1 | None | SRR11972163 | Sensitive | lineage1 | None | SRR11972170 | HR-TB | lineage3 | None | SRR11972171 | RR-TB | lineage2.2.2 | None | SRR13591377 | Sensitive | lineage4.1.1.3 | None | ERR4815278 | Other | lineage4.8 | None | SRR15368973 | Other | None | SRR13861506 | RR-TB | lineage4.9 | None | SRR14088382 | MDR-TB | lineage3 | None | SRR15315871 | Sensitive | lineage4.9 | None | SRR22048375 | Other | lineage4.1.2.1 | None | SAMN02381005 | Other | lineage4.6.1.1 | None | SAMN02381009 | MDR-TB | lineage4.4.1.1 | None | SRR3105762 | HR-TB | None | ERR4816928 | HR-TB | lineage1.2.2.2 | None | SAMN02381037 | MDR-TB | lineage4.6.1 | None | ERR4816429 | Other | lineage1.1.2 | None | ERR192070 | Other | None | ERR4815944 | HR-TB | lineage4.1.2.1 | None | ERR2027233 | RR-TB | lineage4.1.2.1 | None | ERR4816238 | Sensitive | lineage4.1.1 | None | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | ERR2124088 | Other | lineage4.4.1.1 | None | ERR2124090 | MDR-TB | lineage2.2.1 | None | ERR2124092 | HR-TB | lineage1.2.2.2 | None | ERR2124091 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR2510736 | Other | lineage4.1.2.1 | None | ERR2145516 | Sensitive | lineage2.2.1 | None | ERR1034791 | RR-TB | None | ERR4816755 | Other | lineage4.1.1.3 | None | SAMN02599156 | HR-TB | lineage3.1.2.1 | None | SRR3742667 | Sensitive | lineage4.9 | None | ERR4816718 | Other | lineage4.1.2.1 | gb | ERR245790 | Sensitive | None | ERR2510746 | Other | lineage2.2.1 | None | ERR2510807 | Other | lineage4.6 | None | ERR2510820 | Other | lineage4.8 | None | ERR2510831 | Other | lineage4.3.3 | None | ERR2510813 | Sensitive | lineage4.8 | None | ERR1873445 | MDR-TB | lineage2.2.1 | None | ERR4819324 | Other | lineage4.8 | gb | ERR1199065 | Sensitive | lineage4.6.1 | None | ERR1873557 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819602 | Sensitive | lineage4.9 | None | ERR4819867 | Other | lineage1.1.3.2 | None |
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