EBG00000313339 - n.1016T>C
Drug resistance types
74 Sensitive
34 RR-TB
55 HR-TB
42 MDR-TB
14 Pre-XDR-TB
0 XDR-TB
109 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 139 |
| lineage3;lineage4 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.3.4.1 | 2 |
| La1.3 | 1 |
| lineage3 | 7 |
| lineage2.2.1 | 35 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| La3;lineage4.9 | 8 |
| lineage4.8 | 12 |
| La1;lineage4.9 | 2 |
| lineage3.1.1 | 1 |
| lineage4.2.1 | 4 |
| La1;lineage4.1.2 | 1 |
| La1.2.BCG | 2 |
| lineage4.9.1 | 1 |
| lineage4.3.4.2.1 | 9 |
| lineage4.4.1.2 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage4.3.2.1 | 2 |
| 3 | |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.5 | 1 |
| lineage4.1.3 | 2 |
| lineage4.4.1.1.1 | 2 |
| lineage4.3.3 | 9 |
| lineage4.3.4.2 | 2 |
| lineage4.4.2 | 2 |
| lineage4.4.1.1 | 2 |
| lineage4.1.2.1 | 6 |
| lineage4.1.2 | 2 |
| lineage4.4 | 1 |
| lineage4.1.1.1 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| La2 | 1 |
| lineage5.1.1 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.8.1 | 3 |
| lineage4 | 2 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage1.1.2 | 2 |
| lineage2.2;lineage4 | 1 |
| lineage2.2.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.3 | 2 |
| lineage2.2.1;lineage4.9 | 2 |
| M.canetti;lineage4.2 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4.1.1.3 | 2 |
| lineage1.1.3.3 | 1 |
| lineage1.1.3.1 | 2 |
| La1.6 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.2 | 1 |
| lineage4.6.2.2 | 2 |
| lineage6.1.3 | 2 |
| lineage4.3.2 | 1 |
| La1.8.1 | 5 |
| lineage4.8.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3;lineage4.9 | 1 |
| lineage6 | 1 |
| lineage4.6.1.1 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage5.2 | 2 |
| lineage4.2.1.1 | 1 |
| lineage2;lineage4 | 1 |
| La3;lineage4 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage3.1.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage1.2.2 | 1 |
| lineage4.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 328 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1175508 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR1035162 | MDR-TB | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR10796617 | Other | lineage4.3.4.1 | None | ERR4769436 | Other | La1.3 | None | SRR1140716 | Other | lineage3 | None | SRR6046376 | Other | lineage3 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR502474 | RR-TB | lineage4.9 | None | ERR11466514 | Sensitive | lineage4.3.4.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR3283014 | Other | La3;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR1173170 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4797184 | HR-TB | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | ERR11465189 | RR-TB | lineage4.9.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR1023509 | MDR-TB | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | ERR10796576 | Sensitive | lineage4.9 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR1063896 | HR-TB | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | ERR6358979 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR2514173 | Other | lineage4.5 | gb | ERR4797474 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | SAMN02585910 | RR-TB | lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR9786592 | Other | lineage4.3.4.2 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796564 | Other | lineage4.3.3 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR926165 | Other | lineage4.9 | None | ERR10796633 | Other | lineage4.3.4.2 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR6832787 | Other | lineage2.2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR11342682 | Other | lineage4.1.2 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR16156817 | Other | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR13888750 | Other | La2 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | SRR28119823 | Sensitive | lineage4.9 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR502473 | RR-TB | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | ERR502517 | Other | lineage5.1.1 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR21240161 | Sensitive | lineage4.1.2.1 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR4821704 | Other | lineage4.3.3 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR867567 | RR-TB | lineage3 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR5341418 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR4830887 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR10796593 | Other | lineage4.3 | None | ERR10796593 | Other | lineage4.3 | None | ERR502510 | HR-TB | lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR971389 | Other | lineage4.9 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR4830892 | Pre-XDR-TB | lineage2.2.1 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR4817060 | Other | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR3675502 | Sensitive | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR10993951 | RR-TB | La1.6 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR867566 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR9786276 | Sensitive | lineage4.8 | None | SRR1180345 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR5341298 | Other | lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | SRR6832249 | Sensitive | lineage2.2.1 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR7535082 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283031 | Other | La3;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR5908124 | Other | lineage4.8 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | ERR4816610 | Other | lineage4.3.3 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR1181251 | Other | lineage2.2.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR4818904 | Other | lineage4.8 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR6045002 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR6981999 | Sensitive | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796563 | Other | lineage4.3.3 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR7236177 | Other | La1.8.1 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR3283032 | Other | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR1180996 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR323062 | HR-TB | lineage4.9 | None | SRR18002985 | HR-TB | lineage2.2.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | DRR184982 | Other | lineage2.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR9787362 | Sensitive | lineage6 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR1173281 | Other | lineage3 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR6044875 | Other | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR926164 | Other | lineage4.9 | None | ERR9119120 | Other | lineage4.8 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1173770 | Other | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR736856 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR133986 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | SRR8692905 | Sensitive | None | ERR9786597 | Other | lineage4.6.2.2 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR2693252 | HR-TB | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR9786076 | Other | lineage3 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR1791747 | Other | La1.8.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4812495 | Other | lineage4.1.2.1 | pe | SRR14296220 | Other | La1.8.1 | None | ERR926157 | Other | lineage4.9 | None | ERR867574 | Other | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | ERR1063855 | Other | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR2517074 | Pre-XDR-TB | lineage3 | gb | SRR5341310 | Other | lineage1.1.2 | None | ERR4818126 | Other | lineage1.2.2 | None | SRR1181349 | Sensitive | lineage4 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | ERR323066 | HR-TB | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None |
|---|
