EBG00000313339 - n.526T>C
Drug resistance types
77 Sensitive
26 RR-TB
79 HR-TB
36 MDR-TB
16 Pre-XDR-TB
0 XDR-TB
104 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 166 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.1.2.1 | 5 |
| lineage4.3.3 | 5 |
| lineage4.2.1 | 6 |
| lineage3 | 6 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.3.4.2.1 | 8 |
| lineage4.3.3;lineage4.8 | 4 |
| lineage2.2.1 | 32 |
| lineage4.7 | 1 |
| La1;lineage4.9 | 3 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage5.1.1 | 2 |
| La3;lineage4.9 | 6 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.3.2.1 | 4 |
| lineage6 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.6.1.1 | 3 |
| lineage4.4.1.2 | 2 |
| La1;lineage4.1.2 | 1 |
| lineage2.2.1;lineage4.9 | 3 |
| lineage2.1;lineage4.9 | 2 |
| lineage5.2 | 2 |
| La1.8.1 | 3 |
| La1.7;lineage4.9 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.8 | 5 |
| lineage6.1.3 | 3 |
| lineage4.9;lineage7 | 2 |
| lineage2.2;lineage4 | 1 |
| lineage4.4 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage1.1.2 | 2 |
| lineage4.4.2 | 1 |
| lineage4.1.1.3 | 4 |
| lineage4.3;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage2.2.2 | 3 |
| lineage4.3.4.1;lineage4.9 | 1 |
| lineage4 | 3 |
| lineage1.1.1.1 | 1 |
| lineage3.1.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| 3 | |
| lineage4.8.1 | 2 |
| lineage3.1.3 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.6.2.2 | 1 |
| La1.3 | 3 |
| lineage4.3 | 1 |
| lineage6.3.1 | 1 |
| lineage4.3.4.1 | 3 |
| La1;lineage2;lineage4.9 | 1 |
| La1.2;La1.8.1 | 1 |
| La3;lineage4.3.4 | 1 |
| lineage4.1.3 | 1 |
| lineage1.2.2.2 | 2 |
| lineage2;lineage4.9 | 1 |
| La1.2.BCG | 2 |
| lineage4.9.1 | 1 |
| lineage4.2.1.1 | 1 |
| La1.7.1 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.4.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 338 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1159378 | Other | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR926156 | Other | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | ERR3275709 | HR-TB | lineage3 | nl | SRR16156817 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR323066 | HR-TB | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR7645928 | Other | lineage4.7 | None | SRR3675582 | Other | lineage4.9 | None | SRR1180996 | Other | lineage4.9 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | ERR502517 | Other | lineage5.1.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR6046376 | Other | lineage3 | None | SRR1180250 | Other | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR1181299 | Other | lineage4.9 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | SRR1180578 | Other | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR9787362 | Sensitive | lineage6 | None | ERR736831 | Other | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1180647 | Other | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR1173719 | Other | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR10796597 | Other | lineage4.3.3 | None | SRR1183341 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR1173185 | Other | lineage4.9 | None | SRR1183152 | Other | lineage4.9 | None | ERR502510 | HR-TB | lineage4.9 | None | ERR1023509 | MDR-TB | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR1792011 | Other | La1.8.1 | None | SRR5341319 | Other | lineage3 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR971389 | Other | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR779852 | HR-TB | lineage4.9 | None | SRR7755657 | Other | lineage4.8 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR2024953 | MDR-TB | lineage2.2.1 | cn | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR926165 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR7535082 | Other | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR926157 | Other | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR4818904 | Other | lineage4.8 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR4821811 | Sensitive | lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | SRR1181286 | Other | lineage4.9 | None | ERR867572 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR1175474 | Other | lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR5341387 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR1184308 | RR-TB | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR3283014 | Other | La3;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173281 | Other | lineage3 | None | SRR19295647 | HR-TB | lineage4.9 | None | SRR1183339 | Other | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR1023236 | Other | lineage6.1.3 | None | SRR1173310 | Other | lineage3.1.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR4817915 | Other | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR1181508 | Sensitive | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR3283021 | MDR-TB | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR1063896 | HR-TB | None | ERR4817069 | RR-TB | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR3797029 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR5341373 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR1180345 | Other | lineage4.9 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR5341298 | Other | lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | ERR4769408 | Other | La1.3 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR9786076 | Other | lineage3 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR6045832 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR387051 | RR-TB | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR736848 | Other | lineage4.9 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR502523 | Other | lineage6.3.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | SRR1180686 | Other | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR7236177 | Other | La1.8.1 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR3283011 | Other | La3;lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR4769436 | Other | La1.3 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR4796254 | Other | lineage4.9 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR18912069 | Other | lineage4.1.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | SRR6045158 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR4820484 | Sensitive | lineage4.8 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180047 | Other | lineage4.9 | None | SRR1180569 | Sensitive | lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR037504 | Other | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1196478 | Other | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR736834 | HR-TB | lineage4.9 | None | SRR21469202 | Other | La1.7.1 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR926155 | Other | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR4796577 | HR-TB | None | ERR245675 | Sensitive | lineage1.1.2 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | ERR176718 | Sensitive | lineage2.2.1 | None | ERR137286 | Other | lineage4.9 | None | ERR6358979 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR10315558 | RR-TB | lineage2.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None |
|---|
