EBG00000313339 - n.526T>C


Drug resistance types
113 Sensitive 35 RR-TB 69 HR-TB 54 MDR-TB 26 Pre-XDR-TB 0 XDR-TB 112 Other
lineage Counts
lineage Count
lineage3 17
lineage4.9 99
lineage4.6.1.1 4
47
lineage2.2.1 43
lineage4 69
lineage4.9;lineage2.2 1
lineage2.2 4
lineage4.4.1.1.1 2
lineage2 1
lineage3.1.1 2
lineage4.1.2.1 10
lineage4.2.1 6
lineage4.4.2 2
lineage4.4.1.1 2
lineage4.4 1
lineage2.2.2 3
La1.8.1 8
lineage4.8 8
La1.7.1 4
lineage4.3.4 1
lineage4.9;lineage4.8.1;lineage4.1.1 1
lineage4;lineage2.2 1
lineage4.6.2.2 2
lineage4.1.1.2 1
lineage2.1 2
lineage4.3.4.2.1 7
lineage4.1.3 1
lineage4.5 1
lineage4.3.4.1 2
lineage4.3.4.2 2
lineage3.1.3 1
lineage1.1.2 3
lineage4.3 1
lineage4.3.3 6
lineage4.1.4 1
lineage5.2 2
lineage2.2.1.1 1
lineage4.1.1.3 3
lineage4.2.1.1 1
lineage1.1.3.1 2
lineage5.1.1 2
lineage6.3.1 1
lineage4.7 3
lineage4.1.2 1
lineage4.3.2.1 3
lineage4.8.1 1
lineage4.4.1.2 2
lineage4;lineage3.1 1
La1.3 7
lineage4.9;La1.3 1
lineage4.3.2 1
lineage1.2.2.2 1
lineage1.1.1.1 1
lineage4.9.1 1
lineage6.1.3 1
lineage6 2
lineage4.8;lineage4.3.3 4
lineage4.4.1.1;lineage4.1.2.1 1
spoligotype Counts
spoligotype Count
None 409
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1172075 Pre-XDR-TB lineage3 None
SRR1172717 Other lineage4.9 None
SRR1172807 Sensitive lineage4.9 None
SRR1172885 HR-TB lineage4.9 None
SRR1173185 HR-TB lineage4.9 None
SRR1173834 Other lineage4.6.1.1 None
SRR1173281 RR-TB lineage3 None
SRR1173310 MDR-TB None
SRR1173385 Sensitive lineage4.9 None
SRR1173450 RR-TB lineage4.9 None
SRR1173515 HR-TB lineage4.9 None
SRR1173568 Other lineage4.9 None
SRR1173687 Pre-XDR-TB lineage2.2.1 None
SRR1173719 HR-TB lineage3 None
SRR1173777 Other lineage4 None
SRR1175052 HR-TB lineage4.9 None
SRR1175473 Other lineage4.9 None
SRR1175474 HR-TB lineage4.9 None
SRR1175472 MDR-TB lineage4 None
SRR1175491 MDR-TB lineage4 None
SRR1175506 Sensitive lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
SRR1175513 Other lineage4.9 None
SRR1180250 Other lineage4.9 None
SRR1180148 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR1180406 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9;lineage2.2 None
SRR1180413 Sensitive lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
SRR1181283 Sensitive lineage4.9 None
SRR1180996 HR-TB lineage4 None
SRR1181214 Other lineage4.9 None
SRR1181237 Sensitive lineage2.2 None
SRR1181325 Sensitive lineage4.9 None
SRR1181368 Other lineage4.9 None
SRR1181349 Sensitive lineage4.4.1.1.1 None
SRR1181351 Sensitive lineage4.9 None
SRR13180204 Sensitive lineage3 None
SRR1181390 Sensitive lineage2 None
SRR1181402 Sensitive lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
SRR1183965 Sensitive lineage4.9 None
SRR1184021 Sensitive lineage4.9 None
SRR12634609 MDR-TB lineage3.1.1 None
SRR1184308 Sensitive lineage4.9 None
SRR1184329 MDR-TB lineage4.9 None
SRR1196478 MDR-TB lineage4.9 None
SRR1196545 HR-TB lineage4.9 None
SRR11972367 Sensitive lineage2.2.1 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR11972449 MDR-TB lineage2.2 None
SRR13180363 Sensitive lineage4.1.2.1 None
SRR14782539 MDR-TB lineage4.2.1 None
SRR13423546 Other lineage4.4.2 None
SRR14334194 Pre-XDR-TB lineage2.2.1 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR14801749 Sensitive None
SRR16156188 HR-TB lineage4.9 None
SRR17567917 RR-TB lineage4.4.1.1 None
SRR16156697 MDR-TB lineage2.2.1 None
SRR16156832 RR-TB None
SRR16627752 RR-TB lineage4.4 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR1791747 Other La1.8.1 None
SRR1792011 Other La1.8.1 None
SRR18002981 Other lineage2.2.1 None
SRR18911555 Other lineage4.1.2.1 None
SRR19295647 Sensitive lineage4.9 None
SRR18912069 Other lineage4.1.2.1 None
SRR8692897 Other lineage4.9 None
SRR19303820 RR-TB lineage4.8 None
SRR21469201 Other La1.7.1 None
SRR21469202 Other La1.7.1 None
SRR8692790 RR-TB lineage4 None
SRR8692893 Other lineage4.9 None
SRR20632814 Sensitive lineage4 None
SRR20969542 Other lineage4.4.2 None
SRR21469200 Other La1.7.1 None
SRR21677886 Sensitive lineage4.9 None
SRR22175249 Pre-XDR-TB lineage2.2.1 None
SRR8692800 Other lineage4 None
SRR8692905 HR-TB None
ERR161039 Sensitive lineage4.3.4 None
ERR779852 Sensitive lineage4.9;lineage4.8.1;lineage4.1.1 None
SRR8692863 Other lineage4;lineage2.2 None
ERR4815121 HR-TB lineage4.6.2.2 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
SRR3601585 Pre-XDR-TB lineage2.2 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
SRR3619764 Pre-XDR-TB lineage2.2 None
ERR4815471 Other lineage4.9 None
ERR181744 HR-TB None
ERR1750909 RR-TB lineage4.1.1.2 None
ERR1750889 Other lineage4.4.1.1 None
ERR4816964 Other lineage4.9 None
ERR702405 Sensitive lineage2.1 None
ERR176518 Sensitive lineage4.3.4.2.1 None
ERR4815572 Other lineage4.1.2.1 None
SRR3675456 HR-TB None
SRR3675246 Sensitive lineage4 None
ERR4815079 RR-TB lineage3 None
ERR4816198 Sensitive lineage4.1.3 None
ERR4816470 Other lineage3 None
SRR3675552 RR-TB lineage4.9 None
ERR4817069 RR-TB None
SRR5341422 HR-TB lineage2.1 None
ERR212034 HR-TB None
SRR3675555 HR-TB None
ERR212123 Other None
ERR4816548 MDR-TB lineage4.5 None
SRR5341384 Sensitive lineage4.9 None
ERR216965 HR-TB lineage4.9 None
ERR4816729 Sensitive lineage4.9 None
ERR216978 Sensitive lineage4.3.4.2.1 None
ERR4817204 RR-TB lineage4.9 None
ERR3275996 HR-TB lineage4.3.4.1 nl
ERR4818646 Sensitive lineage4.1.2.1 None
ERR4817310 Other lineage4.9 None
SAMN02380982 MDR-TB lineage4.3.4.2 None
ERR228175 Sensitive lineage3 None
ERR4818710 Sensitive lineage4.9 None
ERR228180 Sensitive lineage3 None
ERR4817915 RR-TB lineage4.9 None
ERR2510804 Other lineage2.2.1 None
ERR4818110 Sensitive lineage4.9 None
ERR2513121 Sensitive lineage3.1.3 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR245675 Sensitive lineage1.1.2 None
ERR3275941 RR-TB lineage4.3 nl
ERR4818904 Other lineage4.8 None
SRR5341453 Sensitive None
ERR4818570 Other lineage4.3.3 None
ERR4819051 Other lineage4 None
ERR3275709 HR-TB lineage3 nl
SRR5341366 Sensitive lineage4 None
SRR5341373 HR-TB lineage4 None
SRR5341365 Pre-XDR-TB lineage3 None
SRR5341412 Pre-XDR-TB lineage3 None
SRR5153091 HR-TB lineage4.3.3 None
ERR4819357 Other lineage4.9 None
SRR5341387 Other lineage4 None
SRR5341400 HR-TB lineage4 None
ERR1035138 MDR-TB None
SRR5341425 Other lineage4 None
SRR5341432 HR-TB lineage4 None
SRR5341293 HR-TB lineage4 None
ERR4820494 Sensitive lineage4.9 None
SRR5341455 Sensitive lineage4 None
ERR4820484 Other lineage4.8 None
SRR5341303 RR-TB lineage4 None
SRR5341298 Sensitive lineage4 None
ERR4820503 Other lineage2.2.1 None
SRR5341300 Other lineage4 None
SRR5341299 Sensitive lineage4 None
ERR4819910 Other lineage4.9 None
SRR5341308 Sensitive lineage4 None
SRR5341313 HR-TB None
ERR4819933 Other lineage4.9 None
ERR1023509 Other None
ERR4820030 Other lineage4.9 None
SRR5341315 Sensitive None
SRR5341319 Other lineage3 None
SRR5341310 Other lineage1.1.2 None
SRR2024953 MDR-TB lineage2.2.1 cn
ERR4821172 RR-TB lineage4.9 None
SRR5341461 Sensitive lineage4 None
SRR5341467 Other lineage4 None
SRR5341469 Other lineage4 None
ERR4821811 RR-TB lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
ERR4821655 Sensitive lineage4 None
ERR4821550 Other lineage2.2.1 None
ERR4821272 RR-TB lineage4.1.2.1 None
SRR6045795 HR-TB lineage2.2.1 None
ERR2693227 Other lineage4.9 None
SRR6046141 Other lineage4.9 None
SRR6045010 Other lineage4 None
SRR6045892 Sensitive None
SRR6044876 Sensitive lineage4 None
SRR6044952 RR-TB lineage4.9 None
SRR6044983 Other lineage3.1.1 None
SRR6045832 HR-TB lineage4.9 None
SRR6044835 Sensitive lineage4 None
SRR6045191 Sensitive lineage4.9 None
SRR6045158 Other lineage4.9 None
SRR6045379 Other None
SRR6046385 Other lineage4.9 None
SRR6046376 Other lineage3 None
ERR4828806 Other lineage4.1.4 None
ERR2851356 Sensitive lineage4.9 None
SRR6046497 Other lineage4.9 None
ERR485006 HR-TB lineage4.9 None
SRR6046907 Other lineage4.9 None
ERR323037 HR-TB lineage4 None
SRR6046839 Other lineage4.9 None
SRR6511621 HR-TB None
ERR502472 Other lineage4.6.2.2 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4872077 Pre-XDR-TB lineage5.2 None
ERR502481 Pre-XDR-TB lineage4.9 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR4831657 MDR-TB lineage2.2.1 None
SRR6982141 RR-TB lineage4.3.3 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
SRR6982239 HR-TB lineage4.1.1.3 None
SRR6785281 Other lineage4.2.1.1 None
SRR6785493 MDR-TB lineage4.3.3 None
ERR502510 Sensitive lineage4 None
SRR6797586 HR-TB lineage1.1.3.1 None
SRR6855695 Sensitive lineage4.8 None
ERR502517 MDR-TB lineage5.1.1 None
ERR502523 Other lineage6.3.1 None
SRR8217918 HR-TB None
ERR5311077 RR-TB La1.8.1 None
SRR9971270 RR-TB lineage2.2.1 None
SRR7131195 Other lineage2.2.1 None
ERR5087596 Other La1.8.1 None
SRR7131296 Other lineage4.3.3 None
SRR7496471 Sensitive None
SRR7496523 Other lineage4.7 None
SRR9970979 Sensitive lineage4.8 None
SRR7535047 RR-TB lineage4.6.1.1 None
SRR7535082 Sensitive lineage4 None
SRR9970978 Sensitive lineage4.1.2 None
SRR7645906 Other lineage2.2.1 None
SRR7645901 MDR-TB lineage2.2.1 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR7645899 RR-TB lineage2.2.1 None
SRR7645928 RR-TB lineage4.7 None
SRR7645971 Other lineage2.2.1 None
SRR7646018 MDR-TB lineage4.2.1 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR7645972 MDR-TB lineage4.2.1 None
SRR9971080 RR-TB lineage2.2.1 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
SRR9971112 Other lineage2.2.1 None
SRR7755649 MDR-TB lineage4.2.1 None
SRR9971122 MDR-TB lineage4.8 None
SRR7755657 Other lineage4.8 None
SRR7755655 Other lineage4.1.2.1 None
SRR9971168 Other lineage4.3.2.1 None
SRR9971113 Other lineage2.2.1 None
SRR9971150 RR-TB lineage4.8.1 None
ERR323107 Other lineage4 None
SRR7755688 Pre-XDR-TB lineage4.2.1 None
ERR323066 Sensitive lineage4 None
ERR323048 Pre-XDR-TB lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
DRR185024 Other lineage2.2.2 None
ERR323085 Sensitive lineage4 None
ERR1034647 MDR-TB lineage4.1.1.3 None
ERR067699 HR-TB lineage4 None
ERR036207 Other lineage4.9 None
ERR1034634 HR-TB None
ERR1063855 Other lineage4 None
ERR1035122 Sensitive None
ERR10796596 Other lineage4.9 None
ERR1063896 Sensitive None
ERR10762495 MDR-TB lineage2.2.1 None
ERR10796572 Other lineage4.3.4.1 None
ERR1063883 Sensitive lineage4 None
ERR10796591 MDR-TB lineage4.9 None
ERR10796595 Other lineage4.9 None
ERR1199132 Sensitive lineage4.6.1.1 None
ERR10796597 Other lineage4 None
ERR10796615 Other lineage4 None
ERR10796634 Other lineage4 None
ERR133825 Sensitive lineage4 None
ERR126597 MDR-TB lineage4.4.1.2 None
ERR137286 Sensitive lineage4 None
ERR323115 Sensitive lineage4 None
ERR3283006 RR-TB lineage4.9 None
ERR3273109 MDR-TB lineage4 None
ERR3283013 MDR-TB lineage4 None
ERR3283021 HR-TB None
ERR3283014 HR-TB None
ERR3283030 HR-TB lineage4.9 None
ERR3283028 Other None
ERR3283040 HR-TB None
ERR3283032 HR-TB None
ERR3283031 HR-TB None
ERR3283057 HR-TB lineage4 None
ERR3283046 MDR-TB lineage4.9 None
ERR3283047 HR-TB None
ERR3797015 HR-TB None
ERR3468488 RR-TB La1.8.1 None
ERR3797047 HR-TB lineage4 None
ERR3797021 Other La1.8.1 None
ERR3797065 MDR-TB lineage4 None
ERR3797048 HR-TB None
ERR3797062 RR-TB lineage4.9 None
ERR3797067 Other La1.8.1 None
ERR3797063 HR-TB None
ERR3797079 Sensitive lineage4 None
ERR3797073 HR-TB La1.8.1 None
ERR3797080 HR-TB lineage4.9 None
ERR387051 HR-TB None
ERR3797087 Sensitive lineage4 None
ERR3797064 Sensitive None
ERR4596910 Sensitive lineage4 None
ERR4024582 MDR-TB lineage4.1.2.1 None
ERR405219 HR-TB lineage4;lineage3.1 None
ERR4024991 Other None
ERR4188247 HR-TB None
ERR4457829 MDR-TB lineage4.1.2.1 None
ERR4769408 Other La1.3 None
ERR473303 Sensitive lineage4.9 None
ERR473323 HR-TB lineage4.9 None
ERR473334 HR-TB lineage4.9 None
ERR473367 Sensitive lineage4.9 None
ERR4769436 Other La1.3 None
ERR4769506 Sensitive La1.3 None
ERR4769442 HR-TB lineage4 None
ERR4769444 HR-TB lineage4.9 None
ERR4769474 HR-TB lineage4 None
ERR4769516 Other La1.3 None
ERR4769552 Other La1.3 None
ERR4769514 Other La1.3 None
ERR4769550 Other lineage4.9;La1.3 None
ERR4796472 Pre-XDR-TB lineage2.2.1 None
ERR4769555 Other La1.3 None
ERR4796254 Sensitive lineage4 None
ERR4796577 MDR-TB None
ERR4796929 Sensitive lineage4 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4797184 Sensitive lineage4 None
ERR4797474 Other None
ERR4797264 Sensitive None
ERR4799378 Sensitive lineage4 None
ERR4798099 Other None
ERR4808964 RR-TB lineage2.2.1 None
ERR4809333 Pre-XDR-TB lineage2.2.2 None
ERR6358951 HR-TB lineage4 None
ERR5987263 MDR-TB lineage2.2.1 None
ERR6358979 Other None
ERR6359070 Other lineage4.9 None
ERR6359066 HR-TB lineage4 None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR6866022 Other None
ERR6359069 Other lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR6866547 Sensitive lineage4 None
ERR6866241 Other lineage4.3.2 None
ERR6866410 Sensitive None
ERR6866639 Other None
ERR736834 Sensitive lineage4 None
ERR736820 MDR-TB lineage1.2.2.2 None
ERR736831 HR-TB lineage4.9 None
ERR736848 HR-TB None
ERR736837 Other lineage4.9 None
ERR736856 HR-TB lineage4 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR751345 Other lineage5.1.1 None
ERR752012 HR-TB lineage1.1.1.1 None
ERR736872 Sensitive lineage4 None
ERR751326 Sensitive lineage4 None
ERR9119483 Pre-XDR-TB lineage5.2 None
ERR037504 Other lineage4.9.1 None
ERR176718 Sensitive lineage2.2.1 None
ERR9787256 Other lineage6.1.3 None
ERR970449 RR-TB lineage4.1.1.3 None
ERR9786076 Sensitive lineage3 None
ERR9119733 MDR-TB lineage2.2.1 None
ERR970413 MDR-TB lineage2.2.1 None
ERR970445 MDR-TB lineage2.2.1 None
ERR987765 Sensitive lineage4.6.1.1 None
ERR9787336 Other lineage6 None
ERR9787362 Sensitive lineage6 None
ERR987695 HR-TB lineage4.3.4.2 None
ERR987707 MDR-TB lineage4.7 None
SRR10315558 Sensitive lineage2.2.1 None
SRR10315551 Sensitive lineage2.2.1 None
SRR10315567 Other lineage2.2.1 None
SRR1049559 MDR-TB lineage4.3.4.2.1 None
SRR10315751 MDR-TB lineage4.8 None
SRR1049560 MDR-TB lineage4.3.4.2.1 None
SRR1049676 MDR-TB lineage4.8;lineage4.3.3 None
SRR1049672 Other lineage3 None
SRR1049673 Pre-XDR-TB lineage3 None
SRR1062920 MDR-TB lineage4.8;lineage4.3.3 None
SRR1062871 MDR-TB lineage4.3.4.2.1 None
SRR1062918 Pre-XDR-TB lineage3 None
SRR1049677 MDR-TB lineage4.8;lineage4.3.3 None
SRR1049726 MDR-TB lineage4.4.1.1;lineage4.1.2.1 None
SRR10808668 Sensitive lineage2.2.1 None
SRR1062928 RR-TB lineage4 None
SRR10808399 Sensitive lineage4 None
SRR10809074 Sensitive lineage4 None
SRR10808805 Sensitive None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR1140753 MDR-TB lineage4.3.4.2.1 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
SRR1140574 MDR-TB lineage4.8;lineage4.3.3 None
SRR1158918 Sensitive lineage4 None
SRR11418327 HR-TB La1.7.1 None