Rv0668 - c.1332C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
125 Sensitive
24 RR-TB
58 HR-TB
28 MDR-TB
15 Pre-XDR-TB
1 XDR-TB
70 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 13 |
| lineage4.9 | 134 |
| lineage2.2.1 | 34 |
| lineage4.9;lineage7 | 1 |
| lineage3.1.3 | 2 |
| lineage4.7 | 1 |
| lineage4.3.2.1 | 5 |
| lineage4.8 | 12 |
| La1.8.1 | 6 |
| lineage4.3.4 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.5 | 1 |
| lineage4.6.2.2 | 3 |
| lineage4 | 3 |
| lineage4.1.2.1 | 8 |
| lineage4.3.4.2 | 1 |
| lineage4.6.1.2 | 6 |
| lineage4.3.3 | 7 |
| lineage4.4.1.1.1 | 3 |
| lineage4.6.3 | 1 |
| lineage1.1.1.1 | 1 |
| La1.6 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 6 |
| 2 | |
| lineage4.6.1.1 | 3 |
| lineage1.1.1 | 2 |
| lineage3;lineage4 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.4.1.2 | 2 |
| La1.3 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4.1.1.2 | 1 |
| lineage5.1.1 | 1 |
| lineage2.2.2 | 1 |
| lineage2.2.1.2 | 2 |
| lineage1.1.2 | 2 |
| lineage2.2.1;lineage4.5 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage4.1.1.3 | 4 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1;lineage4.9 | 2 |
| lineage4.1.2 | 3 |
| La1.7.1;lineage4.9 | 1 |
| La1.7.1 | 1 |
| lineage4.8.1 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage2.2.1;lineage4.9 | 3 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| La1.4 | 1 |
| lineage6.1.3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage3.1 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 321 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173281 | Other | lineage3 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR19303779 | Sensitive | lineage4.8 | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1180345 | Other | lineage4.9 | None | ERR4815079 | RR-TB | lineage3 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR1049672 | Other | lineage3 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4829238 | Sensitive | lineage3 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SAMN02381051 | RR-TB | lineage4.6.1.2 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR3273109 | HR-TB | lineage4 | None | SRR11349133 | MDR-TB | lineage4.3.3 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR751326 | Other | lineage4.9 | None | ERR2446413 | Sensitive | lineage4.6.3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | ERR978767 | RR-TB | lineage4.8 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR19303806 | Sensitive | lineage4.1.2.1 | None | ERR6866639 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR3675246 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR4817584 | Other | lineage3;lineage4.9 | None | SRR9971026 | Sensitive | lineage4.4.1.1.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | ERR4815815 | Sensitive | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR1063896 | Sensitive | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR6044780 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR6358979 | Other | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR16156775 | Other | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR4817554 | Other | lineage1.1.1 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4814896 | Other | lineage2.2.1.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | ERR9786076 | Sensitive | lineage3 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | SRR11342667 | MDR-TB | lineage4.3.3 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR19303813 | Sensitive | lineage4.8 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR5341453 | Other | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR4819546 | HR-TB | lineage3 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR7236330 | Other | La1.8.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR6046737 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4821007 | Other | lineage1.2.2.2 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR1173310 | Other | lineage3.1.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SAMN02381005 | Sensitive | lineage4.6.1.1 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR7645936 | Sensitive | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR4798823 | HR-TB | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR17567930 | Sensitive | lineage4.4.1.1 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR6046210 | Other | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR11465833 | Sensitive | lineage4.3.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR2027233 | Sensitive | lineage4.1.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR6981999 | Sensitive | lineage2.2.1 | None | SRR7131160 | Sensitive | lineage3 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4769418 | Other | La1.2 | None | ERR4816852 | Other | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR11342634 | MDR-TB | lineage4.8 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR5311077 | Other | La1.8.1 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR7240033 | Other | La1.8.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR28351442 | HR-TB | lineage3.1 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR1181368 | Other | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None |
|---|
