SRR1049559
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4769418
|
Other
|
La1.2
|
None
|
ERR4821007
|
Other
|
lineage1.2.2.2
|
None
|
SRR1173281
|
Other
|
lineage3
|
None
|
ERR9786076
|
Sensitive
|
lineage3
|
None
|
SRR1180355
|
Sensitive
|
lineage4.9
|
None
|
ERR4797474
|
Sensitive
|
lineage4.9
|
None
|
ERR6866022
|
Other
|
lineage4.8;lineage4.9
|
None
|
ERR736875
|
HR-TB
|
lineage4.9
|
None
|
SRR1140724
|
Other
|
lineage2.2.1
|
None
|
SRR1049725
|
Other
|
lineage4.1.2.1;lineage4.4.1
|
None
|
ERR4815310
|
Other
|
lineage2.2.1;lineage4.9
|
None
|
ERR4819809
|
HR-TB
|
lineage4.6.2.2
|
None
|
SRR1180410
|
Sensitive
|
lineage4.9
|
None
|
ERR323062
|
Sensitive
|
lineage4.9
|
None
|
ERR4798823
|
HR-TB
|
lineage4
|
None
|
ERR4819314
|
Other
|
lineage1.1.1
|
None
|
SRR1049674
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1140712
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR1181325
|
Sensitive
|
lineage4.9
|
None
|
ERR4816762
|
Sensitive
|
lineage4.9
|
None
|
ERR4024582
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR137286
|
Other
|
lineage4.9
|
None
|
SRR1180406
|
Sensitive
|
lineage4.9
|
None
|
SRR1049675
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1173568
|
Sensitive
|
lineage4.9
|
None
|
ERR736872
|
HR-TB
|
lineage4.9
|
None
|
SRR10993951
|
RR-TB
|
La1.6
|
None
|
SRR6044875
|
Sensitive
|
lineage4.9
|
None
|
SRR1049673
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR736817
|
HR-TB
|
lineage4.3.4
|
None
|
ERR4815079
|
RR-TB
|
lineage3
|
None
|
SRR1172807
|
Sensitive
|
lineage4.9
|
None
|
SRR1180391
|
Sensitive
|
lineage4.9
|
None
|
SRR1180444
|
Sensitive
|
lineage4.9
|
None
|
ERR4831620
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR17567930
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR1172717
|
Sensitive
|
lineage4.9
|
None
|
ERR9786592
|
Other
|
lineage4.3.4.2
|
None
|
SRR5153091
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4817667
|
HR-TB
|
lineage4.8
|
None
|
SRR10315466
|
RR-TB
|
lineage2.2.1
|
None
|
SRR18909918
|
Other
|
lineage2.2.1.1
|
None
|
ERR4457829
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR702405
|
Sensitive
|
lineage4.9
|
None
|
ERR4872322
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11465833
|
Sensitive
|
lineage4.3.2.1
|
None
|
SRR12708415
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4831617
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1184114
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
ERR4815550
|
Other
|
lineage2.2;lineage4.9
|
None
|
ERR067712
|
Sensitive
|
lineage4.9
|
None
|
SRR12708407
|
HR-TB
|
lineage4.3.2.1
|
None
|
SRR1175487
|
Sensitive
|
lineage4.9
|
None
|
ERR736856
|
Sensitive
|
lineage4.9
|
None
|
ERR9787256
|
Other
|
lineage6.1.3
|
None
|
ERR502510
|
Sensitive
|
lineage4.9
|
None
|
SRR10315751
|
MDR-TB
|
lineage4.8
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
ERR4769433
|
RR-TB
|
lineage4.9
|
None
|
ERR323045
|
HR-TB
|
lineage1;lineage4.9
|
None
|
SRR1062880
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR7240033
|
Other
|
La1.2;La1.8.1
|
None
|
SRR14801749
|
HR-TB
|
lineage4.9
|
None
|
ERR4817628
|
Sensitive
|
lineage4.8
|
gb
|
ERR405219
|
HR-TB
|
La1.7;lineage3.1;lineage4
|
None
|
ERR4799478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4818252
|
Sensitive
|
lineage4.1.1.2
|
None
|
ERR124636
|
Sensitive
|
lineage4.9
|
None
|
ERR216938
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR067699
|
Sensitive
|
La1;lineage2;lineage4.9
|
None
|
SRR12708370
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR5341461
|
HR-TB
|
lineage4.9
|
None
|
SRR12708411
|
HR-TB
|
lineage1.2.2.2
|
None
|
SRR6789624
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
ERR3273109
|
HR-TB
|
lineage4
|
None
|
ERR176779
|
HR-TB
|
lineage4.9
|
None
|
SRR1180319
|
Sensitive
|
lineage4.9
|
None
|
ERR4769436
|
Other
|
La1.3
|
None
|
SRR5341267
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
ERR978767
|
RR-TB
|
lineage4.8
|
None
|
ERR1035122
|
Sensitive
|
lineage4.9
|
None
|
SRR12416842
|
HR-TB
|
lineage4.9
|
None
|
ERR6866639
|
Other
|
lineage4.9
|
None
|
ERR1063849
|
HR-TB
|
lineage4.9
|
None
|
SRR3675246
|
Other
|
lineage4.9
|
None
|
ERR3445501
|
HR-TB
|
La1.7.1;La1.7.X-unk4;lineage7
|
None
|
SRR5341308
|
Sensitive
|
lineage4.9
|
None
|
SRR9971065
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1175512
|
Sensitive
|
lineage4.9
|
None
|
SRR1180399
|
Sensitive
|
lineage4.9
|
None
|
SRR1062928
|
Other
|
lineage4.1.2.1;lineage4.9
|
None
|
ERR4819383
|
RR-TB
|
lineage4.9
|
None
|
SRR1180413
|
Sensitive
|
lineage4.9
|
None
|
ERR11465511
|
Other
|
lineage4.3.4.2.1
|
None
|
SRR3675585
|
Sensitive
|
lineage4.9
|
None
|
ERR9992879
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR9971112
|
Other
|
lineage2.2.1
|
None
|
SRR1181390
|
Sensitive
|
lineage2.2.1;lineage4.9
|
None
|
SRR1062871
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
SRR5341299
|
HR-TB
|
lineage4.9
|
None
|
ERR4024991
|
Other
|
lineage4.8;lineage4.9
|
None
|
ERR3797081
|
Sensitive
|
lineage4.9
|
None
|
ERR4829238
|
Sensitive
|
lineage3
|
None
|
SRR1181402
|
Sensitive
|
lineage4.9
|
None
|
SRR1181368
|
Other
|
lineage4.9
|
None
|
ERR5917985
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5341365
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR176778
|
HR-TB
|
lineage4.9
|
None
|
SRR1173310
|
Other
|
lineage3.1.1
|
None
|
ERR4769530
|
RR-TB
|
lineage4.9
|
None
|
SRR17567887
|
Sensitive
|
lineage4.4.1.2
|
None
|
SRR18002887
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4796254
|
Sensitive
|
lineage4.9
|
None
|
SRR11349133
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1140736
|
Other
|
lineage4.1.2.1
|
None
|
SRR1175513
|
Sensitive
|
lineage4.9
|
None
|
ERR4816322
|
Other
|
lineage4.9
|
None
|
SRR1158918
|
Sensitive
|
lineage4.9
|
None
|
SRR1175506
|
Sensitive
|
lineage4.9
|
None
|
SRR1180250
|
Other
|
lineage4.9
|
None
|
ERR6866547
|
Other
|
La1.7;lineage4.9;lineage6
|
None
|
ERR323066
|
Sensitive
|
lineage4.9
|
None
|
ERR1199132
|
Sensitive
|
lineage4.6.1.1
|
None
|
ERR4818646
|
Sensitive
|
lineage4.1.2.1
|
None
|
SAMN02381005
|
Sensitive
|
lineage4.6.1.1
|
None
|
SRR11342658
|
RR-TB
|
lineage4.1.2
|
None
|
SRR7645936
|
Sensitive
|
lineage2.2.1
|
None
|
SRR9971041
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1180345
|
Other
|
lineage4.9
|
None
|
SRR12142339
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1159378
|
Other
|
lineage4.9
|
None
|
SRR1180946
|
Sensitive
|
lineage2;lineage4.9
|
None
|
SRR6982239
|
Sensitive
|
lineage4.1.1.3
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
SAMEA3501073
|
RR-TB
|
lineage4.8
|
None
|
ERR323108
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SRR5341310
|
Other
|
lineage1.1.2
|
None
|
SRR1181237
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
ERR736837
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR11342642
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR12708418
|
HR-TB
|
lineage2.2.1
|
None
|
ERR323107
|
Sensitive
|
lineage4.9
|
None
|
SRR5341300
|
HR-TB
|
lineage4.9
|
None
|
SAMN02381051
|
RR-TB
|
lineage4.6.1.2
|
None
|
ERR323115
|
Sensitive
|
lineage4.9
|
None
|
SRR9971150
|
RR-TB
|
lineage4.8.1
|
None
|
ERR4814734
|
Other
|
lineage1.2.1.1
|
None
|
ERR181887
|
Other
|
lineage4.9
|
None
|
SRR10809074
|
Sensitive
|
lineage4.9
|
None
|
ERR4818561
|
Sensitive
|
lineage4.9
|
None
|
SRR3675230
|
Other
|
lineage3;lineage4
|
None
|
ERR1063883
|
HR-TB
|
lineage4.9
|
None
|
SRR3675235
|
Sensitive
|
lineage4.9
|
None
|
SRR6981999
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7131160
|
Sensitive
|
lineage3
|
None
|
ERR4821655
|
HR-TB
|
lineage4.9
|
None
|
ERR4819051
|
Sensitive
|
lineage4.9
|
None
|
ERR4816852
|
Other
|
lineage4.9
|
None
|
SRR1181283
|
Sensitive
|
lineage4.9
|
None
|
SRR16156188
|
Sensitive
|
lineage4.9
|
None
|
ERR4797184
|
Sensitive
|
lineage4.9
|
None
|
ERR4769474
|
HR-TB
|
lineage4.9
|
None
|
SAMN02380990
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR6866125
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR1184308
|
Sensitive
|
lineage4.9
|
None
|
ERR751326
|
Other
|
lineage4.9
|
None
|
ERR2446413
|
Sensitive
|
lineage4.6.3
|
None
|
SRR11342667
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4821272
|
RR-TB
|
lineage4.1.2.1
|
None
|
SRR1180977
|
Sensitive
|
lineage4.9
|
None
|
SRR1181349
|
Sensitive
|
lineage4
|
None
|
ERR4596910
|
Sensitive
|
lineage4.9
|
None
|
ERR245794
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR5341453
|
Other
|
lineage4.9
|
None
|
ERR978767_ERR978765_ERR978766
|
RR-TB
|
lineage4.8
|
None
|
SAMN02380982
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR3797062
|
RR-TB
|
lineage4.9
|
None
|
ERR133825
|
HR-TB
|
La1;lineage4.9
|
None
|
ERR4819546
|
HR-TB
|
lineage3
|
None
|
SRR7236330
|
Other
|
La1.8.1
|
None
|
ERR323056
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR4797193
|
HR-TB
|
lineage1.1.2
|
None
|
ERR752012
|
HR-TB
|
lineage1.1.1.1
|
None
|
SRR5341467
|
Other
|
lineage4.9
|
None
|
ERR779852
|
Sensitive
|
lineage4.9
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
ERR736834
|
Sensitive
|
lineage4.9
|
None
|
SRR16278274
|
Other
|
La1.4
|
None
|
ERR212125
|
HR-TB
|
lineage4.9
|
None
|
SRR6045892
|
Sensitive
|
lineage4.9
|
None
|
SRR1181351
|
Sensitive
|
lineage4.9
|
None
|
SRR9971026
|
Sensitive
|
lineage4.4.1.1.1
|
None
|
SRR6046737
|
Other
|
lineage4.9
|
None
|
ERR4818110
|
Sensitive
|
lineage4.9
|
None
|
ERR3283006
|
RR-TB
|
lineage4.9
|
None
|
ERR2513121
|
Sensitive
|
lineage3.1.3
|
None
|
SRR9971168
|
Other
|
lineage4.3.2.1
|
None
|
ERR4815815
|
Sensitive
|
lineage4.9
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
ERR4814896
|
Other
|
lineage2.2.1.1
|
None
|
SRR5341469
|
HR-TB
|
lineage4.9
|
None
|
ERR4797264
|
Sensitive
|
lineage4.9
|
None
|
SRR1180996
|
Sensitive
|
lineage4.9
|
None
|
SRR1183965
|
Sensitive
|
lineage4.9
|
None
|
SRR12708419
|
Other
|
lineage4.3.3
|
None
|
SRR1735598
|
RR-TB
|
lineage4.9
|
None
|
ERR405209
|
Sensitive
|
La1.7;lineage4.9
|
None
|
SRR9971046
|
MDR-TB
|
lineage4.8
|
None
|
ERR2513229
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3445502
|
Sensitive
|
lineage4.9;lineage7
|
None
|
ERR4831529
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18913742
|
Sensitive
|
lineage3.1.3
|
None
|
SRR7496523
|
Other
|
lineage4.7
|
None
|
SRR12708396
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR1180312
|
Sensitive
|
lineage4.9
|
None
|
SRR19303779
|
Sensitive
|
lineage4.8
|
None
|
SRR1049726
|
Other
|
lineage4.1.2.1;lineage4.4.1.1
|
None
|
SRR11349145
|
Pre-XDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR11462861
|
Other
|
La1.8.1
|
None
|
ERR2513405
|
Other
|
lineage2.2.1
|
None
|
SRR7236177
|
Other
|
La1.8.1
|
None
|
SRR7535082
|
Sensitive
|
lineage4.9
|
None
|
SRR6045010
|
Sensitive
|
lineage4.9
|
None
|
ERR176651
|
Other
|
lineage4.9
|
None
|
ERR9786597
|
Other
|
lineage4.6.2.2
|
None
|
SRR18549032
|
HR-TB
|
lineage2.2.1.2;lineage7
|
None
|
SRR6045359
|
Sensitive
|
lineage4.9
|
None
|
SRR1175052
|
HR-TB
|
lineage4.9
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
SRR12708414
|
HR-TB
|
lineage2.2.1
|
None
|
ERR978765
|
RR-TB
|
lineage4.8
|
None
|
ERR4799989
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR10315558
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1181215
|
Sensitive
|
lineage4.4.1.1.1
|
None
|
ERR1063896
|
Sensitive
|
|
None
|
SRR12708399
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR1180300
|
Sensitive
|
lineage4.9
|
None
|
SRR1180375
|
Sensitive
|
lineage4.9
|
None
|
SRR12708409
|
HR-TB
|
lineage4.3.3
|
None
|
ERR502511
|
Sensitive
|
lineage4.9
|
None
|
SRR1062919
|
HR-TB
|
lineage2.2.1
|
None
|
ERR751345
|
Other
|
lineage5.1.1
|
None
|
SRR6045191
|
Sensitive
|
lineage4.9
|
None
|
SRR12708413
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR6046210
|
Other
|
lineage4.9
|
None
|
ERR6866410
|
Sensitive
|
lineage4.9
|
None
|
SRR1792478
|
HR-TB
|
La1.7.1
|
None
|
SRR5341455
|
Sensitive
|
lineage4.9
|
None
|
SRR6044780
|
Sensitive
|
lineage4.9
|
None
|
SRR1791747
|
Other
|
La1.8.1
|
None
|
ERR6358979
|
Other
|
lineage4.9
|
None
|
ERR987765
|
Sensitive
|
lineage4.6.1.1
|
None
|
SRR12708371
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR1184021
|
Sensitive
|
lineage4.9
|
None
|
ERR4798099
|
Other
|
lineage4.9
|
None
|
SRR5341425
|
Other
|
lineage4.9
|
None
|
ERR4831616
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4769508
|
RR-TB
|
lineage4.9
|
None
|
SRR16156775
|
Other
|
lineage4.9
|
None
|
SRR5341384
|
HR-TB
|
lineage4.9
|
None
|
SRR1180420
|
Sensitive
|
lineage4.9
|
None
|
ERR4816548
|
HR-TB
|
lineage4.5
|
None
|
SRR22424787
|
Sensitive
|
lineage4.9
|
None
|
ERR3445503
|
Other
|
La1.7.1;La1.7.X-unk4
|
None
|
SRR10315567
|
HR-TB
|
lineage2.2.1
|
None
|
SRR7496471
|
Sensitive
|
lineage4
|
None
|
ERR4811035
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
SRR9970981
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR6044876
|
Sensitive
|
lineage4.9
|
None
|
ERR867540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12708392
|
Other
|
lineage2.2.1
|
None
|
SRR6046644
|
HR-TB
|
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3
|
None
|
SRR10808805
|
Other
|
La1;lineage4.9
|
None
|
SRR6511621
|
Sensitive
|
lineage4.9
|
None
|
ERR4814639
|
HR-TB
|
lineage4.9
|
None
|
ERR1063859
|
HR-TB
|
La1.7.1;lineage4.9
|
None
|
SRR1183054
|
Sensitive
|
lineage4.9
|
None
|
ERR4596902
|
MDR-TB
|
lineage3
|
None
|
SRR1172885
|
HR-TB
|
lineage4.9
|
None
|
ERR5311077
|
Other
|
La1.8.1
|
None
|
ERR978766
|
RR-TB
|
lineage4.8
|
None
|
ERR8479578
|
Sensitive
|
lineage1.1.3.1
|
None
|
ERR4817554
|
Other
|
lineage1.1.1
|
None
|
ERR3445487
|
Other
|
La1.7.X-unk4
|
None
|
ERR4817584
|
Other
|
lineage3;lineage4.9
|
None
|
SRR1173740
|
Other
|
lineage3;lineage4
|
None
|
SRR9970978
|
Sensitive
|
La1;lineage4.1.2
|
None
|
SRR28351442
|
HR-TB
|
lineage3.1
|
None
|
SRR6046259
|
Sensitive
|
lineage4.9
|
None
|
SRR1173777
|
Sensitive
|
lineage4.9
|
None
|
ERR4800102
|
Sensitive
|
lineage3.1.2.1
|
None
|
SRR5341298
|
Sensitive
|
lineage4.9
|
None
|
SRR29096174
|
Sensitive
|
La1.7;lineage4.9
|
None
|
ERR4796929
|
Sensitive
|
lineage4.9
|
None
|
SRR1062918
|
Other
|
lineage3
|
None
|
ERR9786528
|
Sensitive
|
lineage4.6.2.2
|
None
|
ERR2027233
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR4831621
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR1049582
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR5341412
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR5341387
|
Other
|
lineage4.9
|
None
|