Rv0668 - c.1566T>C


Drug resistance types
111 Sensitive 10 RR-TB 69 HR-TB 21 MDR-TB 11 Pre-XDR-TB 3 XDR-TB 179 Other
lineage Counts
lineage Count
lineage4.9 168
M.canetti;lineage2.2 2
24
lineage2.1;lineage4.9 10
lineage4.9;lineage6.1.3 1
lineage2.2.1.2 1
lineage2.2.1 30
lineage2.1;lineage6.3 2
La3;lineage4.9 16
lineage4.1.2.1 16
lineage2.1;lineage4.9;lineage6.3 6
lineage3 10
lineage2.2;lineage4.9 1
lineage2.2.2;lineage4 1
lineage4.3.4.2.1 5
lineage4.3.4.2 1
lineage4 5
lineage4.4.1.2 2
La1.7;lineage3.1;lineage4 1
lineage2.2.1;lineage4.5 1
La1.7;lineage4.9 3
lineage4.1.1.1 3
lineage4.1 2
lineage4.8 14
lineage4.1.3 2
La1.8.1 4
lineage4.1.2 2
lineage4.2.1 2
lineage4.3.3 2
lineage4.3.2.1 1
lineage2.2.2 1
lineage4.8.1 1
lineage3.1 1
La3;lineage2.1;lineage4.9 3
M.canetti;lineage2.1;lineage6.3 1
La1.2.BCG 1
lineage4.1.2.1;lineage4.4.1 1
lineage2.2.1;lineage4.9 1
lineage4.9;lineage6.3 5
lineage1.1.1 1
La1.7;lineage4.9;lineage6 1
M.canetti;lineage2.2.2;lineage6.2 2
La3;M.canetti;lineage4.9 1
lineage4.3.1;lineage4.9;lineage6 1
lineage3.1.2.1 2
lineage4.5 2
lineage4.1.1.2 1
lineage4.6.2.2 4
lineage1.1.2 3
lineage4.1.1.3 3
lineage4.7 1
La1;lineage4.9 3
lineage1.1.2;lineage4.1 1
lineage4.4.1.1.1 2
lineage4.6.3 1
La1.4 1
lineage6 1
lineage6.1.3 1
La1.7.1 1
lineage1.2.1.2 1
lineage4.4 1
lineage4.4.1.1 2
lineage4.3.4.1 1
lineage2.1 1
lineage4.6.3;lineage4.9 1
lineage4.8;lineage4.9 2
La1.2.BCG;La1.8.1 1
lineage4.2.2.2 1
La1;lineage2;lineage4.9 1
lineage6.3.1 1
lineage2.2.1;lineage3 1
lineage1.1.3.1 1
La3;lineage2.2.1 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La3;lineage2.1;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 404
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR3283055 HR-TB lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR926156 Sensitive lineage4.9 None
SRR19295647 Sensitive lineage4.9 None
SRR3675572 Other None
SRR3675457 Other lineage4.9 None
SRR5341333 Other lineage2.1;lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR6046385 Sensitive lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR29096541 Other lineage4.9 None
SRR6045832 Other lineage4.9 None
ERR323062 Sensitive lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR323066 Sensitive lineage4.9 None
ERR3797029 Other lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR4769439 HR-TB lineage4.9 None
ERR11252736 Other lineage4.9 None
SRR18213713 HR-TB None
SRR6044875 Sensitive lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.2.1.2 None
SRR29772570 Other lineage4.9 None
ERR4831620 MDR-TB lineage2.2.1 None
SRR1159378 Other lineage4.9 None
SRR1062919 HR-TB lineage2.2.1 None
ERR3797069 Other lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR3797048 Other La3;lineage4.9 None
SRR9613550 HR-TB lineage4.1.2.1 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1049672 Other lineage3 None
ERR4815550 Other lineage2.2;lineage4.9 None
ERR067712 Sensitive lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1013528 Pre-XDR-TB lineage2.2.2;lineage4 None
ERR4769508 RR-TB lineage4.9 None
SRR16156775 Other lineage4.9 None
ERR161034 Other lineage4.3.4.2.1 None
ERR926160 Sensitive lineage4.9 None
ERR176549 Other lineage4.3.4.2 None
ERR736856 Sensitive lineage4.9 None
ERR1035157 Other lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
ERR2027263 Other lineage4 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR14801749 HR-TB lineage4.9 None
ERR4800341 Other None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR26159043 Other lineage4.9 None
ERR4596902 MDR-TB lineage3 None
SRR22424787 Sensitive lineage4.9 None
ERR13265833 Other lineage4.9 None
ERR6359069 Sensitive lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4811035 Pre-XDR-TB lineage2.2.1;lineage4.5 None
SRR29096174 Sensitive La1.7;lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
SRR10808399 Sensitive lineage4.9 None
ERR9786617 Other lineage4.1.1.1 None
ERR926161 Sensitive lineage4.9 None
ERR9786515 Other lineage4.1.2.1 None
ERR6359074 HR-TB lineage4.9 None
ERR9786526 Other lineage4.1 None
SRR6044876 Sensitive lineage4.9 None
SRR10315751 MDR-TB lineage4.8 None
SRR6511621 Sensitive lineage4.9 None
ERR4814639 HR-TB lineage4.9 None
ERR9786440 Other lineage4.1 None
ERR9786611 HR-TB lineage4.1.3 None
ERR485006 HR-TB lineage4.9 None
SRR6045371 Other lineage4.9 None
SRR11462861 Other La1.8.1 None
SRR29017461 Other La3;lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
SRR12416824 HR-TB None
ERR3283044 Other lineage4 None
ERR363509 Sensitive lineage4.9 None
ERR9786627 Other lineage4.1.2.1 None
ERR11081258 Other lineage4.8 None
ERR3797047 MDR-TB lineage4.9 None
SRR3675246 Other lineage4.9 None
SRR9970978 Sensitive lineage4.1.2 None
SRR6785263 Sensitive lineage2.2.1 None
SRR6785268 Sensitive lineage4.2.1 None
SRR29055629 MDR-TB lineage2.2.1 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR9971080 RR-TB lineage2.2.1 None
SRR9970979 Sensitive lineage4.8 None
SRR5341308 Sensitive lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR1062865 Sensitive lineage2.2.2 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR9970980 Other lineage4.1.2 None
ERR3797046 HR-TB lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
SRR1106670 Sensitive lineage4.9 None
SRR28351442 HR-TB lineage3.1 None
ERR1034634 HR-TB lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR2229542 Other lineage4.8 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR5341467 Other lineage4.9 None
SRR1173777 Sensitive lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR4818110 Sensitive lineage4.9 None
SRR1915487 Other La1.2.BCG None
ERR4797264 Sensitive lineage4.9 None
ERR926165 Sensitive lineage4.9 None
ERR2693252 Sensitive lineage4.9 None
SRR1049725 Other lineage4.1.2.1;lineage4.4.1 None
ERR4815310 Other lineage2.2.1;lineage4.9 None
ERR4815471 Sensitive lineage4.9 None
ERR13265528 Other lineage4.9;lineage6.3 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR7535082 Sensitive lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR926155 Sensitive lineage4.9 None
ERR4407463 HR-TB None
ERR4796577 HR-TB None
SRR30182471 Sensitive lineage4.9 None
ERR4819314 Other lineage1.1.1 None
SRR1049674 HR-TB lineage2.2.1 None
ERR926157 Sensitive lineage4.9 None
ERR4769444 HR-TB lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR3283040 HR-TB lineage4.9 None
SRR1049675 HR-TB lineage2.2.1 None
SRR6045359 Sensitive lineage4.9 None
ERR4818710 Sensitive lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR4769417 Pre-XDR-TB lineage4.9 None
SRR1049673 Pre-XDR-TB lineage3 None
SRR1013527 Other lineage2.2.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR4815604 Other None
ERR4798823 HR-TB None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR3675214 Other lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
SRR1169194 Other lineage4.9 None
SRR5341455 Sensitive lineage4.9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR7496517 Other None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
SRR1791747 Other La1.8.1 None
ERR702405 Sensitive lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR926162 Sensitive lineage4.9 None
ERR176741 Other lineage4.9 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR11081864 Other lineage3 None
ERR323107 Sensitive lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
ERR11466146 Other lineage4.3.4.2.1 None
ERR323115 Sensitive lineage4.9 None
ERR4798099 Other lineage4.9 None
SRR1169249 Other lineage4.9 None
ERR12015083 Other lineage4.8 None
ERR126597 HR-TB lineage4.4.1.2 None
ERR13267017 Pre-XDR-TB lineage2.2.1 None
ERR4816964 Sensitive lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
SRR10809074 Sensitive lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR2027233 Sensitive lineage4.1.2.1 None
ERR3283030 HR-TB lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR3283014 Sensitive La3;lineage4.9 None
ERR4816717 RR-TB lineage3.1.2.1 None
ERR11049020 Other lineage4.8 None
ERR11081257 Other lineage4.8 None
ERR4817735 Other lineage4.8 None
SRR16156817 Other lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR4821655 HR-TB lineage4.9 None
SRR5341366 Sensitive lineage4.9 None
ERR4800102 Sensitive lineage3.1.2.1 None
ERR3797019 Other La1.8.1 None
SRR29051077 Other lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
SRR29016901 Other La3;lineage4.9 None
SRR6789626 Other None
ERR4816548 HR-TB lineage4.5 None
ERR4818252 Sensitive lineage4.1.1.2 None
ERR4819809 HR-TB lineage4.6.2.2 None
ERR2513259 Other lineage3 None
ERR4816470 HR-TB lineage3 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4769474 HR-TB lineage4.9 None
ERR752229 Other lineage4.5 None
ERR4797193 HR-TB lineage1.1.2 None
SRR16157123 Other lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
ERR4819933 Sensitive lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR10315567 Other lineage2.2.1 None
SAMN02380982 MDR-TB lineage4.3.4.2.1 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR4819932 Sensitive lineage4.7 None
ERR4821276 Sensitive lineage3 None
SRR10808805 Other La1;lineage4.9 None
ERR4822101 Sensitive lineage1.1.2;lineage4.1 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR9786569 Other lineage4.8 None
ERR9786076 Sensitive lineage3 None
SRR29096527 Sensitive lineage4.9 None
SRR29051093 Other lineage4.9 None
ERR3273109 HR-TB lineage4 None
SRR3675236 Other None
SRR1141261 Sensitive lineage4.9 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
ERR926163 Other lineage4.9 None
ERR751326 Other lineage4.9 None
ERR2446413 Sensitive lineage4.6.3 None
ERR3283021 HR-TB lineage4.9 None
ERR926159 Sensitive lineage4.9 None
SRR16278274 Other La1.4 None
ERR9117721 HR-TB None
ERR9786528 Sensitive lineage4.6.2.2 None
ERR9787165 Other lineage6 None
SRR5341303 Sensitive lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR9787256 Other lineage6.1.3 None
ERR323037 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
SRR10315466 RR-TB lineage2.2.1 None
SRR11342660 MDR-TB lineage2.2.1 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SRR1172885 HR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
ERR4596910 Sensitive lineage4.9 None
SRR5818647 Other lineage4.3.4.2.1 None
ERR4799378 Sensitive lineage4.9 None
SRR20969475 Other lineage1.2.1.2 None
SRR16627752 RR-TB lineage4.4 None
ERR4816585 Other lineage2.2.1 None
ERR4816559 MDR-TB lineage4.4.1.1 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR12416842 HR-TB lineage4.9 None
ERR6866639 Other lineage4.9 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
ERR702406 Other lineage2.1 None
ERR133825 HR-TB La1;lineage4.9 None
SRR3675549 Other lineage4.9 None
SRR25827507 MDR-TB lineage4.1.1.1 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR9971026 Sensitive lineage4.4.1.1.1 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR6785413 Other lineage2.2.1 None
SRR1172234 Other lineage4.9 None
SRR5153091 HR-TB lineage4.3.3 None
SRR7496509 Other None
SRR6046521 Other lineage4.4.1.1 None
SRR6785527 Sensitive lineage2.2.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR502470 RR-TB lineage4.9 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675311 Other lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
ERR11068570 Other lineage4 None
SRR7496472 Other lineage4.9 None
ERR4815815 Sensitive lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
ERR473334 HR-TB lineage4.9 None
ERR3797070 Other lineage4.9 None
ERR736831 Other lineage4.9 None
SRR1180996 Sensitive lineage4.9 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
ERR212001 HR-TB None
ERR9787197 Other None
ERR4817060 Other None
ERR4769442 Sensitive lineage4.9 None
ERR4814352 Other lineage2.2.1 None
SRR5341469 HR-TB lineage4.9 None
SRR29097037 Other lineage4.9 None
SRR5341456 Other lineage4.9 None
ERR363456 Sensitive lineage4.9 None
ERR9786843 Other None
ERR11252612 Other La3;lineage4.9 None
ERR4817069 RR-TB None
SRR20632814 Sensitive lineage4.9 None
SRR5341387 Other lineage4.9 None
SRR25827682 Other None
SRR21690574 Other lineage4.1.2.1 None
ERR4797474 Sensitive lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR6866022 Other lineage4.8;lineage4.9 None
SRR1140724 Other lineage2.2.1 None
ERR9786604 Other None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR1167384 Other La3;lineage4.9 None
SRR6982365 Sensitive lineage2.2.1 None
ERR4769530 RR-TB lineage4.9 None
SRR6045795 Sensitive lineage2.2.1 None
SRR6046141 Other lineage4.9 None
ERR4796254 Sensitive lineage4.9 None
SRR7236177 Other La1.8.1 None
SRR1158918 Sensitive lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR137286 Other lineage4.9 None
SRR1175052 HR-TB lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR1063896 Sensitive None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR369151 Other lineage4.9 None
ERR2515228 Sensitive lineage2.2.1 None
ERR502511 Sensitive lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR550636 MDR-TB lineage4.1.1.3 None
SRR26399973 Other La3;lineage4.9 None
SRR6046210 Other lineage4.9 None
ERR6866410 Sensitive lineage4.9 None
ERR6358979 Other lineage4.9 None
ERR4817667 HR-TB lineage4.8 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
ERR736848 Other lineage4.9 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR6359066 HR-TB lineage4.9 None
ERR502510 Sensitive lineage4.9 None
ERR2513470 Other lineage4.2.2.2 None
ERR4818561 Sensitive lineage4.9 None
SRR6046066 Other lineage4.9 None
ERR3283031 Sensitive La3;lineage4.9 None
ERR2446566 Other lineage4.9 None
ERR373945 Sensitive lineage4.9 None
ERR4769433 RR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
SRR3675235 Sensitive lineage4.9 None
ERR4816999 Other None
ERR3797063 Sensitive La3;lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR4829530 Pre-XDR-TB lineage4.8 None
ERR2517514 Sensitive lineage4.8 None
ERR4797184 Sensitive lineage4.9 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR124636 Sensitive lineage4.9 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR10808668 Sensitive lineage2.2.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR4817896 HR-TB lineage2.2.1 None
ERR4820854 Other lineage4.1.2.1 None
ERR9786421 Other lineage4.1.2.1 None
ERR9786525 Other lineage4 None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR9787139 Other lineage6.3.1 None
ERR990545 Other lineage3 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR9786443 Sensitive lineage4.8 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR4817893 Other lineage4.8 None
ERR9786682 Other lineage4.1.2.1 None
ERR4816904 Sensitive lineage4.1.2.1 None
ERR13265748 Other lineage4.9;lineage6.3 None
SRR5341453 Other lineage4.9 None
ERR926154 Sensitive lineage4.9 None
ERR6358951 Sensitive lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
ERR971389 Sensitive lineage4.9 None
SRR25827687 MDR-TB lineage1.1.2 None
ERR4769493 Other lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR1035122 Sensitive lineage4.9 None
ERR176643 Other La3;lineage4.9 None
SRR6785267 Other lineage2.2.1 None
ERR4819546 HR-TB lineage3 None
ERR926164 Other lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9117709 Other None
SRR5341310 Other lineage1.1.2 None
SRR9971112 Other lineage2.2.1 None
SRR26937071 MDR-TB La3;lineage2.2.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR28119752 Other lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR779852 Sensitive lineage4.9 None
ERR323085 Sensitive lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR736834 Sensitive lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
ERR369157 Sensitive lineage4.9 None
SRR3675585 Sensitive lineage4.9 None
SRR5341298 Sensitive lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
ERR4024991 Other lineage4.8;lineage4.9 None
ERR6359070 Sensitive lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675221 Other lineage4.9 None
ERR405209 Sensitive La1.7;lineage4.9 None
ERR369156 Sensitive lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None