lineage | Count |
---|---|
lineage4.9 | 22 |
lineage4 | 10 |
lineage4.3.2 | 2 |
lineage4;lineage3.1 | 1 |
lineage2.2.1 | 6 |
17 | |
lineage3.1.2.1 | 2 |
lineage4.3.4 | 1 |
lineage4.1.1.3 | 1 |
lineage2.2 | 2 |
lineage4.3.4.2.1 | 4 |
lineage3 | 7 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
lineage4.1.2.1 | 2 |
lineage4.9;lineage2.2.1 | 2 |
lineage2.2.2 | 1 |
La1.6 | 1 |
lineage4.4 | 1 |
La1.7.1 | 1 |
lineage4.5 | 1 |
lineage4.6.3 | 1 |
lineage4.8 | 1 |
lineage4.3.4.2 | 1 |
lineage4.1.2 | 1 |
lineage4.6.1.1 | 2 |
lineage4;lineage2.2.1 | 1 |
lineage4.4.1.1.1 | 1 |
lineage4.3.4.1 | 1 |
spoligotype | Count |
---|---|
None | 94 |
ID | Drug resistance | Lineage | Country iso2 | ERR3797062 | RR-TB | lineage4.9 | None | ERR405209 | Sensitive | lineage4 | None | ERR4178291 | Sensitive | lineage4.3.2 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796577 | MDR-TB | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR736875 | HR-TB | lineage4 | None | ERR6865895 | Sensitive | lineage4.3.2 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR1013527 | RR-TB | lineage2.2 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1013531 | MDR-TB | lineage4.9 | None | SRR1013528 | Pre-XDR-TB | lineage2.2 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062864 | Sensitive | lineage4.9;lineage2.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1062865 | HR-TB | lineage2.2.2 | None | SRR1062867 | RR-TB | lineage4.9;lineage2.2.1 | None | SRR1062868 | HR-TB | lineage4.9 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1140736 | RR-TB | None | SRR1106670 | Other | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1141261 | MDR-TB | lineage4.9 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1173740 | Other | None | SRR1175473 | Other | lineage4.9 | None | SRR1173770 | Other | lineage4.9 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR16156832 | RR-TB | None | SRR16156814 | Sensitive | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR15315871 | Sensitive | lineage4.9 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR1791910 | Other | None | SRR16157123 | Other | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4815489 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4 | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | ERR2027233 | RR-TB | lineage4.1.2.1 | None | ERR4817069 | RR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR2446413 | Sensitive | lineage4.6.3 | None | ERR2229358 | Other | lineage4.8 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR4035797 | HR-TB | lineage4.1.2 | None | ERR4820030 | Other | lineage4.9 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6044952 | RR-TB | lineage4.9 | None | ERR4821276 | Other | lineage3 | None | SRR7535082 | Sensitive | lineage4 | None | SRR6046834 | Sensitive | lineage4.9 | None | SRR6896576 | Other | lineage2.2.1 | None | SRR7535053 | Sensitive | lineage3 | None | SRR7535079 | Sensitive | lineage4.6.1.1 | None | SRR7535074 | Sensitive | lineage3 | None | SRR7535081 | Sensitive | lineage4.6.1.1 | None | ERR019859 | MDR-TB | lineage4;lineage2.2.1 | None | SRR9971026 | Sensitive | lineage4.4.1.1.1 | None | ERR323045 | HR-TB | None | ERR1063858 | HR-TB | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR1034634 | HR-TB | None | ERR1063862 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR1063859 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3468659 | Other | lineage4.9 | None |
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