TB-Profiler result

Run: SRR12006095
Summary

Run ID: SRR12006095

Sample name:

Date: 03-04-2023 05:48:50

Number of reads: 6716650

Percentage reads mapped: 78.77

Strain: lineage4.9

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1473147 n.1302G>A non_coding_transcript_exon_variant 0.14
rrs 1473150 n.1305T>G non_coding_transcript_exon_variant 0.15
rrs 1473158 n.1313T>C non_coding_transcript_exon_variant 0.16
rrs 1473161 n.1316A>C non_coding_transcript_exon_variant 0.16
rrs 1473164 n.1319C>T non_coding_transcript_exon_variant 0.16
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.2
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.21
rrs 1473188 n.1343T>C non_coding_transcript_exon_variant 0.23
rrs 1473201 n.1356A>C non_coding_transcript_exon_variant 0.23
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.23
rrs 1473216 n.1371C>T non_coding_transcript_exon_variant 0.25
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.13
rrs 1473258 n.1413T>C non_coding_transcript_exon_variant 0.12
rrs 1473262 n.1417T>C non_coding_transcript_exon_variant 0.12
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.17
rrl 1476336 n.2679C>G non_coding_transcript_exon_variant 0.2
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.24
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.24
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.29
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.31
rrl 1476383 n.2726T>G non_coding_transcript_exon_variant 0.31
rrl 1476423 n.2766T>C non_coding_transcript_exon_variant 0.38
rrl 1476428 n.2771C>A non_coding_transcript_exon_variant 0.36
rrl 1476458 n.2801T>G non_coding_transcript_exon_variant 0.29
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.26
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.2
PPE35 2170598 c.15G>A synonymous_variant 1.0