EBG00000313325 - n.1417T>C
Drug resistance types
39 Sensitive
34 RR-TB
20 HR-TB
17 MDR-TB
15 Pre-XDR-TB
0 XDR-TB
194 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 34 |
| lineage3.1.3 | 2 |
| lineage4 | 6 |
| lineage4.9 | 37 |
| lineage2.2.1 | 30 |
| lineage4.6.2.2 | 7 |
| lineage3.1.1 | 5 |
| lineage4.2.1 | 3 |
| lineage3 | 26 |
| lineage4.9.1 | 1 |
| 6 | |
| lineage1.1.2 | 8 |
| lineage4.3.4.2.1 | 6 |
| lineage4.8 | 25 |
| lineage4.7 | 3 |
| lineage4.3.3 | 14 |
| lineage4.1.1.3 | 5 |
| lineage4.2.1.1 | 2 |
| lineage4.4.1.1 | 9 |
| lineage4.1.2 | 4 |
| lineage1 | 2 |
| lineage4.5 | 6 |
| lineage3.1.2 | 2 |
| lineage4.1.1.3.1 | 6 |
| lineage4.1.1 | 5 |
| lineage6.3.1 | 1 |
| lineage4;lineage3 | 1 |
| lineage4.6 | 4 |
| lineage4.8.2 | 1 |
| lineage1.2.2.2 | 3 |
| lineage4.1.1.2 | 1 |
| lineage3.1.2.2 | 2 |
| lineage4;lineage3.1.2.1 | 1 |
| lineage4.2.2 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage4.2.2.2 | 5 |
| lineage4.8.1 | 1 |
| lineage4.3.4.1 | 2 |
| lineage1.2.1.1 | 1 |
| La3 | 1 |
| lineage4.3.1.1 | 6 |
| lineage6.1.3 | 1 |
| lineage1.1.3.1 | 3 |
| lineage4.1.3 | 2 |
| lineage1.1.1.1 | 2 |
| lineage4.1 | 3 |
| lineage5.1.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.1;lineage2.2.1 | 1 |
| lineage4.3.4 | 1 |
| La1.7.X-unk4 | 1 |
| La1.8.1 | 1 |
| La1.3 | 1 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage4.6.5 | 2 |
| lineage4.3 | 1 |
| lineage2.2.2 | 2 |
| lineage6 | 1 |
| lineage1.2.1.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.4.2 | 1 |
| lineage2.2 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.3.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 319 |
Geographic prevalence
Country level data for this variant is available for 65 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4815572 | Other | lineage4.1.2.1 | None | ERR4815577 | Other | lineage3.1.3 | None | ERR4816232 | Other | lineage4 | None | SRR3675547 | Other | lineage4.9 | None | ERR4816147 | RR-TB | lineage2.2.1 | gb | ERR4816184 | Other | lineage4.1.2.1 | None | ERR4815870 | HR-TB | lineage4.6.2.2 | gb | ERR4817464 | Other | lineage3.1.1 | None | ERR4816968 | Other | lineage4.2.1 | gb | ERR4816982 | Other | lineage4 | None | ERR4816103 | Sensitive | lineage3 | gb | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4816227 | RR-TB | lineage3 | None | ERR212082 | Sensitive | lineage4.9.1 | None | ERR4816270 | Other | lineage4.1.2.1 | None | SRR5485595 | RR-TB | None | ERR4816334 | Other | lineage4.6.2.2 | None | ERR4816397 | Other | lineage1.1.2 | None | ERR4817382 | Other | lineage4.9 | gb | ERR4816462 | Other | lineage4.1.2.1 | None | ERR4817488 | Other | lineage4.3.4.2.1 | None | ERR4816464 | Other | lineage3 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4817127 | Other | lineage4.1.2.1 | None | ERR4816549 | Other | lineage2.2.1 | None | ERR4817131 | Pre-XDR-TB | None | ERR2229233 | Sensitive | lineage4 | None | ERR2229234 | RR-TB | lineage4.8 | None | ERR4817189 | Other | lineage4.7 | None | ERR4816571 | Other | lineage1.1.2 | None | ERR4817398 | Other | lineage3.1.1 | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4816692 | Other | lineage4.1.2.1 | None | ERR4817234 | Other | lineage4.1.1.3 | None | ERR4816800 | Other | lineage4.8 | gb | ERR4816856 | Other | lineage4.1.2.1 | None | ERR4816831 | Other | lineage4.1.2.1 | None | ERR4817278 | Other | lineage4.8 | gb | ERR4817730 | Other | lineage4.2.1.1 | gb | ERR4817526 | Other | lineage4.4.1.1 | gb | ERR2513589 | Other | lineage3.1.3 | None | ERR4816882 | Other | lineage4.8 | None | ERR4817294 | Other | lineage4.1.2 | None | ERR4817506 | Sensitive | lineage3 | gb | ERR4818988 | Other | lineage1 | None | ERR4817903 | Other | lineage4.1.2.1 | gb | ERR4819002 | HR-TB | lineage4.8 | None | ERR2513398 | Other | lineage4.2.1 | gb | ERR4817907 | Other | lineage3 | gb | ERR2513056 | HR-TB | lineage4.1.2.1 | gb | ERR4818726 | Other | lineage4.1.2.1 | None | ERR4817964 | RR-TB | lineage4.1.2.1 | gb | ERR4817966 | Sensitive | lineage4.3.4.2.1 | gb | ERR4818023 | Other | lineage4.1.2 | gb | ERR2513067 | Sensitive | lineage4.8 | gb | ERR2513401 | HR-TB | lineage3 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR4818797 | Other | lineage4.5 | None | ERR4818050 | Other | lineage4.6.2.2 | None | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4818126 | RR-TB | lineage1 | None | ERR2515055 | Other | lineage3 | None | ERR2512494 | Other | lineage4.3.3 | gb | ERR4818200 | Other | lineage3.1.2 | gb | ERR4818180 | Other | lineage4.8 | gb | ERR2512541 | HR-TB | lineage4.2.1.1 | gb | ERR4818208 | Other | lineage4.1.1.3.1 | gb | ERR4819073 | Other | lineage4.1.2.1 | None | ERR2513223 | Other | lineage4.1.2.1 | None | ERR4818261 | Other | lineage1.1.2 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | ERR4818287 | Other | lineage4.5 | gb | SRR4037698 | Sensitive | lineage4.4.1.1 | None | ERR4818888 | Sensitive | lineage4.1.2.1 | None | ERR4818294 | Sensitive | lineage4.1.1 | gb | ERR2512716 | HR-TB | lineage4.6.2.2 | gb | ERR4818930 | Other | lineage4.1.2.1 | None | ERR4818440 | Other | lineage6.3.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818548 | Other | lineage4.3.3 | None | ERR4818556 | Other | lineage3 | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR2513298 | Other | lineage4.8 | gb | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007186 | Other | lineage4.6 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR4818977 | RR-TB | lineage4.1.2.1 | None | ERR2513619 | Other | lineage4.8 | gb | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR2512941 | Other | lineage1.1.2 | None | ERR2513657 | Other | lineage1.2.2.2 | gb | ERR2513652 | Sensitive | lineage4.1.1.3.1 | gb | ERR2513743 | Other | lineage4.1.2 | None | ERR2513681 | Other | lineage1.1.2 | None | ERR4820230 | Other | lineage4.1.2.1 | gb | ERR4819166 | Other | lineage3 | gb | ERR4819192 | Other | lineage3 | None | ERR4819198 | Other | lineage2.2.1 | None | ERR4820256 | Other | lineage2.2.1 | None | ERR4820266 | RR-TB | lineage3 | None | ERR4820265 | Other | lineage4.1.2.1 | None | ERR2513929 | Other | lineage4.1.1.2 | None | ERR4820284 | Other | lineage4.9 | None | ERR4819298 | Other | lineage4.1.2.1 | gb | ERR4819242 | HR-TB | lineage4.6.2.2 | None | ERR2513904 | Other | lineage3.1.2.2 | gb | ERR4819324 | Other | lineage4.8 | gb | ERR2513949 | Other | lineage3 | gb | ERR2514073 | Other | lineage4.1.1.3.1 | None | ERR4819377 | Other | lineage4;lineage3.1.2.1 | None | ERR4820318 | Other | lineage4.2.2 | None | ERR4820736 | Other | lineage4.1.2.1 | gb | ERR2514200 | HR-TB | lineage1.2.1.2.1 | gb | ERR4820338 | Other | lineage4.2.2.2 | None | ERR4820742 | Other | lineage4.3.4.2.1 | None | ERR4819423 | Other | lineage4.6.2.2 | None | ERR2514173 | Other | lineage4.5 | gb | ERR4819549 | Other | lineage3 | gb | ERR4820369 | Other | lineage2.2.1 | None | ERR4819525 | Other | lineage3 | None | ERR4820375 | Sensitive | lineage1.2.2.2 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR2514377 | Sensitive | lineage4.5 | None | ERR4819593 | Other | lineage4.5 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR4820748 | Other | lineage3 | None | ERR4820891 | Other | lineage4.9 | gb | ERR4819622 | Other | lineage4.1.2.1 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR2514668 | Other | lineage4.8.1 | gb | ERR2514533 | Other | lineage4.9 | None | ERR4820787 | Other | lineage3.1.1 | gb | ERR2514645 | Other | lineage4.3.4.1 | None | ERR4819790 | Other | lineage4.6 | gb | ERR2514702 | Other | lineage4.1.2.1 | gb | ERR2513819 | Pre-XDR-TB | lineage4.3.3 | gb | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | ERR4819842 | Other | lineage4.1.2.1 | None | ERR2514834 | Other | lineage4.7 | None | ERR4819910 | Other | lineage4.9 | None | ERR4820820 | Other | lineage1.2.1.1 | gb | ERR4820829 | Other | lineage4.8 | None | ERR4820001 | Other | lineage4.8 | gb | ERR4820012 | Other | lineage4.1.2.1 | None | ERR2515077 | Sensitive | lineage3 | gb | ERR4821054 | Other | lineage3 | None | ERR4820194 | Other | La3 | None | ERR4820941 | HR-TB | lineage3 | gb | ERR4821796 | Other | lineage4.1.1 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR4820679 | Other | lineage4.8 | None | SRR6045422 | Other | lineage4.3.1.1 | None | SRR6046089 | Other | lineage4.1.2.1 | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR6045464 | Other | lineage4.1.1.3 | None | ERR4821105 | Other | lineage3.1.2 | gb | SRR6045496 | Other | lineage6.1.3 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR2660441 | Sensitive | lineage1.1.3.1 | None | ERR2660499 | Sensitive | lineage4.1.1.3 | None | SRR6045537 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821286 | Other | lineage4.8 | None | ERR2660498 | Sensitive | lineage4.3.4.2.1 | None | ERR4821214 | RR-TB | None | ERR4821263 | Other | lineage4.1.3 | gb | ERR4821325 | Other | lineage3 | None | ERR4822004 | Other | lineage1.1.1.1 | gb | ERR4822114 | Other | lineage4.1.2.1 | None | ERR4822035 | Other | lineage4.8 | None | ERR4821360 | Other | lineage4.1.2.1 | None | ERR4821371 | Other | lineage4.8 | gb | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4822105 | Other | lineage4.1 | None | ERR4821722 | Other | lineage2.2.1 | None | ERR4822150 | Other | lineage4.8 | gb | ERR4822217 | Sensitive | lineage4.3.4.1 | None | ERR4821676 | HR-TB | lineage4.8 | None | ERR4822222 | Other | lineage3.1.2.2 | None | ERR4822225 | Sensitive | lineage3 | gb | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4821704 | MDR-TB | lineage4.3.3 | None | ERR4821761 | Other | lineage3 | gb | SRR5818388 | Other | lineage4.9 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045805 | Other | lineage4.3.1.1 | None | SRR6045749 | Other | lineage4.1.1 | gb | SRR6044993 | Other | lineage3 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045071 | Other | lineage4.3.1.1 | None | ERR4830549 | MDR-TB | lineage4.1.1.3 | None | ERR2851359 | Other | lineage4.9 | None | SRR6045396 | Other | lineage4.3.1.1 | None | SRR6046291 | Other | lineage3 | None | ERR4829208 | RR-TB | lineage4.8 | None | ERR4829337 | Other | lineage4.8 | None | SRR6046541 | Other | lineage4.9 | None | SRR6046612 | Other | lineage1.1.1.1 | None | SRR6046534 | Other | lineage1.1.2 | None | SRR6046602 | HR-TB | lineage4.1.2.1 | gb | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6982349 | Sensitive | lineage2.2.1 | None | SRR6981948 | Sensitive | lineage4.3.2.1 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR10796559 | Other | lineage4.9 | None | ERR067732 | RR-TB | lineage4.1;lineage2.2.1 | ru | ERR10796563 | Other | lineage4.3.3 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796574 | Other | lineage4.9 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796576 | RR-TB | lineage4.9 | None | ERR10796580 | RR-TB | lineage4.6 | None | ERR10796630 | HR-TB | None | ERR10796586 | Other | lineage4.9 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR10796590 | Other | lineage4.9 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283008 | Other | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR4195828 | Sensitive | lineage4.7 | None | ERR3797063 | HR-TB | None | ERR4187652 | Other | lineage4.9 | None | ERR4769423 | Other | La1.3 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769512 | Sensitive | lineage4.9 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4796257 | Pre-XDR-TB | lineage2.2.1 | in | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR6197028 | Other | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117676 | Other | lineage4.2.2.2 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | ERR9119683 | Other | lineage4.2.1 | None | ERR9787033 | Sensitive | lineage6 | None | SRR1173258 | Sensitive | lineage1.1.2 | None | SRR10214505 | Sensitive | lineage1.2.1.2 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR10315486 | MDR-TB | lineage2.2.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR12006067 | Sensitive | lineage4.9 | None | SRR12006068 | Sensitive | lineage4.9 | None | SRR12006056 | Sensitive | lineage4.9 | None | SRR12006070 | Sensitive | lineage4.9 | None | SRR12199400 | HR-TB | lineage4.9;lineage1.1 | None | SRR12006091 | Sensitive | lineage4.9 | None | SRR12006095 | Sensitive | lineage4.9 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR18002872 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002929 | HR-TB | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR18213721 | Other | lineage4.8 | None | SRR2101540 | Sensitive | lineage4.3.2.1 | None | ERR4815193 | MDR-TB | lineage4.8 | None | ERR4815118 | Other | lineage2.2 | None | SRR21737226 | Sensitive | lineage4.5 | None | ERR181906 | Sensitive | lineage3.1.1 | mw | ERR4814312 | Other | lineage4 | None | ERR4815627 | Other | lineage4.1.1.3 | gb | ERR4814554 | Other | lineage4.1 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | ERR4814623 | Other | lineage4.8 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4814697 | Sensitive | lineage4.4.1.1 | None | ERR4814681 | Other | lineage2.2.1 | None | ERR4814709 | Other | lineage4.1.1 | None | ERR4815467 | Other | lineage3 | None | ERR4812763 | Other | lineage2.2.1 | None | SRR3675236 | HR-TB | None | SRR3675251 | Other | lineage4.3.3 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR4814737 | Sensitive | lineage4.6 | None | ERR176517 | Sensitive | lineage1.1.3.2 | None | ERR4814821 | Other | lineage2.2.1 | None | ERR4814841 | Other | lineage4.1 | None | ERR4814930 | Other | lineage4.4.1.1 | None | ERR4815517 | Other | lineage1.2.2.2 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR4814911 | Other | lineage4.3.3 | None | ERR4814932 | Other | lineage4.1.1 | None | ERR4815040 | Other | lineage4.2.2.2 | None | ERR4814986 | Other | lineage4.3.4.2 | None | SAMEA3501073 | RR-TB | lineage4.8 | None |
|---|
