TB-Profiler result

Run: SRR6046152
Summary

Run ID: SRR6046152

Sample name:

Date: 04-04-2023 12:12:09

Number of reads: 60481

Percentage reads mapped: 1.95

Strain: lineage4.9

Drug-resistance: Other

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.6 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.4 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 1.0 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6943 c.-359G>A upstream_gene_variant 1.0
gyrA 6949 c.-353A>G upstream_gene_variant 1.0
gyrA 6952 c.-350C>G upstream_gene_variant 1.0
gyrA 6967 c.-335T>C upstream_gene_variant 1.0
gyrA 6970 c.-332C>T upstream_gene_variant 1.0
gyrA 6973 c.-329G>C upstream_gene_variant 1.0
gyrA 6976 c.-326A>G upstream_gene_variant 1.0
gyrA 6982 c.-320A>G upstream_gene_variant 1.0
gyrA 6994 c.-308C>T upstream_gene_variant 1.0
gyrA 7006 c.-296T>C upstream_gene_variant 1.0
gyrA 7010 c.-292C>T upstream_gene_variant 1.0
gyrA 7021 c.-281G>A upstream_gene_variant 1.0
gyrA 7033 c.-269G>C upstream_gene_variant 1.0
gyrA 7480 p.Phe60Tyr missense_variant 1.0
gyrA 7484 c.183T>C synonymous_variant 1.0
gyrA 7490 c.189C>G synonymous_variant 1.0
gyrA 7496 c.195C>T synonymous_variant 1.0
gyrA 7499 c.198G>C synonymous_variant 1.0
mshA 575689 c.342G>C synonymous_variant 1.0
mshA 575695 c.348C>G synonymous_variant 1.0
mshA 575704 c.357T>C synonymous_variant 1.0
mshA 575705 c.358T>C synonymous_variant 1.0
mshA 575713 c.366G>A synonymous_variant 1.0
mshA 575719 c.372C>T synonymous_variant 1.0
mshA 575734 c.387T>G synonymous_variant 1.0
mshA 575779 c.432A>G synonymous_variant 1.0
mshA 575785 c.438T>C synonymous_variant 1.0
mshA 575786 p.Tyr147His missense_variant 1.0
rpoB 760235 c.429T>C synonymous_variant 1.0
rpoB 760283 c.477G>C synonymous_variant 1.0
rpoB 760307 c.501T>C synonymous_variant 1.0
rpoB 760310 c.504G>C synonymous_variant 1.0
rpoB 760313 c.507G>C synonymous_variant 1.0
rpoB 760424 c.618C>G synonymous_variant 1.0
rpoB 760430 c.624T>C synonymous_variant 1.0
rpoB 760454 c.648C>G synonymous_variant 1.0
rpoB 760475 c.669A>G synonymous_variant 1.0
rpoB 760481 c.675G>C synonymous_variant 1.0
rpoB 760484 c.678A>G synonymous_variant 1.0
rpoB 760514 c.708C>T synonymous_variant 1.0
rpoB 761564 c.1758G>C synonymous_variant 1.0
rpoB 761573 c.1767C>G synonymous_variant 1.0
rpoB 761579 c.1773G>C synonymous_variant 1.0
rpoB 761606 c.1800C>G synonymous_variant 1.0
rpoB 762218 c.2412T>C synonymous_variant 1.0
rpoB 762254 c.2448T>G synonymous_variant 1.0
rpoB 762257 c.2451C>G synonymous_variant 1.0
rpoB 762266 c.2460T>C synonymous_variant 1.0
rpoB 762284 c.2478G>C synonymous_variant 1.0
rpoB 762293 c.2487T>C synonymous_variant 1.0
rpoB 762297 c.2491C>T synonymous_variant 1.0
rpoC 763528 c.159G>A synonymous_variant 1.0
rpoC 763537 c.168C>G synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763570 c.201G>C synonymous_variant 1.0
rpoC 763573 c.204G>C synonymous_variant 1.0
rpoC 763594 c.225C>T synonymous_variant 1.0
rpoC 763600 c.231C>G synonymous_variant 1.0
rpoC 763633 c.264T>C synonymous_variant 1.0
rpoC 763636 c.267T>C synonymous_variant 1.0
rpoC 763648 c.279C>A synonymous_variant 1.0
rpoC 763714 c.345G>A synonymous_variant 1.0
rpoC 763717 c.348T>C synonymous_variant 1.0
rpoC 763744 c.375G>C synonymous_variant 1.0
rpoC 763765 c.396T>C synonymous_variant 1.0
rpoC 763768 c.399C>G synonymous_variant 1.0
rpoC 763790 p.Glu141Asn missense_variant 1.0
rpoC 763801 c.432C>G synonymous_variant 1.0
rpoC 763807 c.438T>C synonymous_variant 1.0
rpoC 763813 c.444C>G synonymous_variant 1.0
rpoC 763816 c.447C>G synonymous_variant 1.0
rpoC 763888 c.519G>T synonymous_variant 1.0
rpoC 763894 c.525A>G synonymous_variant 1.0
rpoC 764188 c.819A>G synonymous_variant 1.0
rpoC 764203 c.834G>C synonymous_variant 1.0
rpoC 764206 p.Asp279Glu missense_variant 1.0
rpoC 764217 p.Asn283Ser missense_variant 1.0
rpoC 764245 c.876C>G synonymous_variant 1.0
rpoC 764257 c.888G>C synonymous_variant 1.0
rpoC 764266 c.897T>C synonymous_variant 1.0
rpoC 764269 c.900G>C synonymous_variant 1.0
rpoC 764272 c.903G>C synonymous_variant 1.0
rpoC 764278 c.909A>G synonymous_variant 1.0
rpoC 765612 p.His748Arg missense_variant 1.0
rpoC 765625 c.2256C>G synonymous_variant 1.0
rpoC 765628 c.2259G>C synonymous_variant 1.0
rpoC 765673 p.Asp768Glu missense_variant 1.0
rpoC 765700 c.2331T>C synonymous_variant 1.0
rpoC 765734 c.2365T>C synonymous_variant 1.0
rpoC 766426 c.3057C>T synonymous_variant 1.0
rpoC 766447 c.3078T>C synonymous_variant 1.0
rpoC 766645 c.3276A>G synonymous_variant 1.0
rpoC 766651 c.3282T>C synonymous_variant 1.0
rpoC 766657 c.3288A>G synonymous_variant 1.0
rpoC 766658 p.Arg1097Gly missense_variant 1.0
rpoC 766666 c.3297C>G synonymous_variant 1.0
rpoC 766672 c.3303T>C synonymous_variant 1.0
rpoC 766726 c.3357T>C synonymous_variant 1.0
rpoC 766738 c.3369G>C synonymous_variant 1.0
rpoC 766765 c.3396A>C synonymous_variant 1.0
rpoC 766774 c.3405T>C synonymous_variant 1.0
rpsL 781865 c.306G>C synonymous_variant 1.0
rpsL 781868 c.309T>C synonymous_variant 1.0
rpsL 781871 c.312G>C synonymous_variant 1.0
rpsL 781877 c.318T>C synonymous_variant 1.0
rpsL 781892 c.333A>G synonymous_variant 1.0
rpsL 781898 c.339A>T synonymous_variant 1.0
rplC 800648 c.-161A>T upstream_gene_variant 1.0
rplC 800684 c.-125G>A upstream_gene_variant 1.0
rplC 800690 c.-119C>G upstream_gene_variant 1.0
rplC 800693 c.-116A>G upstream_gene_variant 1.0
rplC 800844 c.36T>C synonymous_variant 1.0
rplC 800867 p.Ser20Asn missense_variant 1.0
rplC 800874 c.66A>G synonymous_variant 1.0
rplC 800877 c.69A>C synonymous_variant 1.0
rplC 800880 c.72A>C synonymous_variant 1.0
rplC 800889 c.81C>G synonymous_variant 1.0
rplC 800907 c.99C>G synonymous_variant 1.0
rplC 800916 c.108A>G synonymous_variant 1.0
rplC 800934 c.126C>G synonymous_variant 1.0
rplC 800937 c.129A>G synonymous_variant 1.0
rplC 800946 c.138T>C synonymous_variant 1.0
rplC 800949 c.141T>C synonymous_variant 1.0
rplC 800967 c.159C>A synonymous_variant 1.0
rplC 800970 c.162T>C synonymous_variant 1.0
rplC 800973 c.165C>T synonymous_variant 1.0
rplC 800982 c.174C>T synonymous_variant 1.0
rplC 801004 p.Leu66Val missense_variant 1.0
rplC 801009 c.201A>C synonymous_variant 1.0
rplC 801027 c.219C>G synonymous_variant 1.0
rplC 801039 c.231A>G synonymous_variant 1.0
fbiC 1304115 c.1185A>G synonymous_variant 1.0
fbiC 1304127 c.1197A>C synonymous_variant 1.0
fbiC 1304133 c.1203G>C synonymous_variant 1.0
fbiC 1304136 c.1206C>G synonymous_variant 1.0
fbiC 1304634 c.1704C>G synonymous_variant 1.0
fbiC 1304637 c.1707G>A synonymous_variant 1.0
fbiC 1304640 c.1710A>C synonymous_variant 1.0
fbiC 1304646 c.1716T>C synonymous_variant 1.0
fbiC 1304670 c.1740G>C synonymous_variant 1.0
fbiC 1304671 p.Val581Thr missense_variant 1.0
fbiC 1304675 p.Gly582Glu missense_variant 1.0
fbiC 1304691 c.1761G>C synonymous_variant 1.0
fbiC 1304694 c.1764A>C synonymous_variant 1.0
fbiC 1304703 c.1773C>G synonymous_variant 1.0
fbiC 1304715 c.1785G>C synonymous_variant 1.0
fbiC 1304724 c.1794A>G synonymous_variant 1.0
fbiC 1304727 c.1797A>G synonymous_variant 1.0
fbiC 1304742 c.1812T>G synonymous_variant 1.0
fbiC 1304748 c.1818T>C synonymous_variant 1.0
fbiC 1304757 c.1827A>G synonymous_variant 1.0
fbiC 1304778 c.1848T>C synonymous_variant 1.0
fbiC 1304784 c.1854T>G synonymous_variant 1.0
fbiC 1304787 c.1857T>C synonymous_variant 1.0
fbiC 1304799 c.1869G>C synonymous_variant 1.0
fbiC 1305215 p.Ser762Thr missense_variant 1.0
fbiC 1305228 c.2298C>T synonymous_variant 1.0
fbiC 1305231 c.2301C>G synonymous_variant 1.0
fbiC 1305237 c.2307A>G synonymous_variant 1.0
fbiC 1305243 c.2313T>C synonymous_variant 1.0
fbiC 1305244 c.2314T>C synonymous_variant 1.0
fbiC 1305273 c.2343C>T synonymous_variant 1.0
fbiC 1305276 c.2346G>C synonymous_variant 1.0
fbiC 1305282 c.2352T>C synonymous_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 1.0
rrs 1472135 n.290C>T non_coding_transcript_exon_variant 0.5
rrs 1472138 n.293C>T non_coding_transcript_exon_variant 0.64
rrs 1472147 n.302G>A non_coding_transcript_exon_variant 0.71
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472153 n.308G>A non_coding_transcript_exon_variant 0.72
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.8
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.94
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.85
rrs 1472240 n.395G>C non_coding_transcript_exon_variant 0.97
rrs 1472242 n.397C>T non_coding_transcript_exon_variant 0.94
rrs 1472251 n.406G>T non_coding_transcript_exon_variant 1.0
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.96
rrs 1472256 n.411T>A non_coding_transcript_exon_variant 0.96
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 1.0
rrs 1472277 n.432C>G non_coding_transcript_exon_variant 1.0
rrs 1472279 n.434T>A non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.83
rrs 1472349 n.504A>C non_coding_transcript_exon_variant 0.86
rrs 1472374 n.529T>G non_coding_transcript_exon_variant 0.92
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.92
rrs 1472389 n.544G>A non_coding_transcript_exon_variant 0.83
rrs 1472390 n.545T>A non_coding_transcript_exon_variant 0.83
rrs 1472391 n.546C>T non_coding_transcript_exon_variant 0.83
rrs 1472412 n.567A>C non_coding_transcript_exon_variant 0.75
rrs 1472415 n.570T>A non_coding_transcript_exon_variant 0.73
rrs 1472418 n.573T>C non_coding_transcript_exon_variant 0.73
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.73
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.67
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.67
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.67
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.67
rrs 1472447 n.602C>T non_coding_transcript_exon_variant 0.75
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.75
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.75
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.67
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 1.0
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 1.0
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.75
rrs 1472498 n.653C>A non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.76
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.94
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.99
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.95
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.53
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.43
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.96
rrs 1472553 n.708C>T non_coding_transcript_exon_variant 0.51
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.49
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.98
rrs 1472572 n.727T>C non_coding_transcript_exon_variant 0.48
rrs 1472574 n.729T>C non_coding_transcript_exon_variant 0.47
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.94
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.55
rrs 1472582 n.738_739delTA non_coding_transcript_exon_variant 0.44
rrs 1472594 n.749G>C non_coding_transcript_exon_variant 0.47
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.98
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.51
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.89
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.5
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 1.0
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 1.0
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 1.0
rrs 1472677 n.832C>T non_coding_transcript_exon_variant 0.5
rrs 1472680 n.835C>T non_coding_transcript_exon_variant 0.47
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 1.0
rrs 1472697 n.852T>G non_coding_transcript_exon_variant 1.0
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 1.0
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 1.0
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.97
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.5
rrs 1472754 n.909G>T non_coding_transcript_exon_variant 0.48
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.96
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.95
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.53
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.64
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.88
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.94
rrs 1472836 n.991G>C non_coding_transcript_exon_variant 0.92
rrs 1472838 n.993A>T non_coding_transcript_exon_variant 0.92
rrs 1472840 n.995A>C non_coding_transcript_exon_variant 0.92
rrs 1472841 n.996G>T non_coding_transcript_exon_variant 0.92
rrs 1472845 n.1000G>C non_coding_transcript_exon_variant 0.92
rrs 1472846 n.1001C>G non_coding_transcript_exon_variant 0.92
rrs 1472861 n.1016G>T non_coding_transcript_exon_variant 0.92
rrs 1472874 n.1029C>A non_coding_transcript_exon_variant 0.92
rrs 1472875 n.1030T>G non_coding_transcript_exon_variant 1.0
rrs 1472877 n.1032T>A non_coding_transcript_exon_variant 0.92
rrs 1472880 n.1035_1036insA non_coding_transcript_exon_variant 1.0
rrs 1472887 n.1042G>C non_coding_transcript_exon_variant 0.41
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.56
rrs 1472912 n.1067C>T non_coding_transcript_exon_variant 0.48
rrs 1472917 n.1072G>A non_coding_transcript_exon_variant 0.48
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 0.4
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.67
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 1.0
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.67
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 1.0
rrs 1473009 n.1165delC non_coding_transcript_exon_variant 0.4
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.43
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.43
rrs 1473044 n.1199C>G non_coding_transcript_exon_variant 0.29
rrs 1473053 n.1208T>A non_coding_transcript_exon_variant 0.57
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.43
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 0.57
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 0.57
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.5
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.5
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473148 n.1303G>A non_coding_transcript_exon_variant 0.86
rrs 1473163 n.1318C>T non_coding_transcript_exon_variant 0.92
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473177 n.1332G>A non_coding_transcript_exon_variant 1.0
rrs 1473191 n.1346C>T non_coding_transcript_exon_variant 0.94
rrs 1473198 n.1354delC non_coding_transcript_exon_variant 1.0
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.88
rrs 1473206 n.1361G>A non_coding_transcript_exon_variant 0.88
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.75
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 1.0
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473290 n.1445C>A non_coding_transcript_exon_variant 1.0
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 1.0
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.75
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 1.0
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 0.5
rrl 1474228 n.571T>C non_coding_transcript_exon_variant 0.67
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474252 n.595T>A non_coding_transcript_exon_variant 0.67
rrl 1474275 n.618T>C non_coding_transcript_exon_variant 0.67
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474634 n.977T>G non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 1.0
rrl 1474658 n.1001A>G non_coding_transcript_exon_variant 1.0
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 1.0
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.67
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.67
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.5
rrl 1474883 n.1226T>C non_coding_transcript_exon_variant 0.67
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475538 n.1881T>C non_coding_transcript_exon_variant 1.0
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 1.0
rrl 1475540 n.1883C>T non_coding_transcript_exon_variant 1.0
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 1.0
rrl 1475550 n.1893A>C non_coding_transcript_exon_variant 1.0
rrl 1475551 n.1894T>G non_coding_transcript_exon_variant 1.0
rrl 1475555 n.1898T>G non_coding_transcript_exon_variant 0.75
rrl 1475564 n.1907C>A non_coding_transcript_exon_variant 0.75
rrl 1475574 n.1917C>G non_coding_transcript_exon_variant 1.0
rrl 1475575 n.1918C>T non_coding_transcript_exon_variant 0.75
rrl 1475576 n.1919C>G non_coding_transcript_exon_variant 0.75
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 0.75
rrl 1475713 n.2056C>G non_coding_transcript_exon_variant 0.38
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 0.38
rrl 1475717 n.2060C>G non_coding_transcript_exon_variant 0.5
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.3
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 0.67
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.5
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 1.0
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 1.0
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.5
rrl 1475783 n.2126T>G non_coding_transcript_exon_variant 0.5
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 0.67
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 0.75
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.8
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.84
rrl 1475874 n.2217C>T non_coding_transcript_exon_variant 0.63
rrl 1475877 n.2220C>G non_coding_transcript_exon_variant 0.43
rrl 1475878 n.2221T>A non_coding_transcript_exon_variant 0.33
rrl 1475879 n.2222T>C non_coding_transcript_exon_variant 0.33
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 1.0
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.86
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 1.0
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.71
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.71
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.71
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.29
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.29
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.67
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 1.0
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 1.0
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 1.0
rrl 1476196 n.2539C>T non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 1.0
rrl 1476210 n.2553G>A non_coding_transcript_exon_variant 1.0
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 1.0
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>C non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 1.0
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 1.0
rrl 1476227 n.2570C>T non_coding_transcript_exon_variant 0.93
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 1.0
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.83
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.97
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.83
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 1.0
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 1.0
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 1.0
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 1.0
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 1.0
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 1.0
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.96
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.96
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.97
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.29
rrl 1476336 n.2679C>T non_coding_transcript_exon_variant 0.72
rrl 1476356 n.2699C>A non_coding_transcript_exon_variant 0.72
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.72
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.99
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.72
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.98
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.74
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.98
rrl 1476383 n.2726T>G non_coding_transcript_exon_variant 0.97
rrl 1476384 n.2727G>T non_coding_transcript_exon_variant 0.71
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.73
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 0.73
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.97
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.99
rrl 1476442 n.2785T>A non_coding_transcript_exon_variant 0.74
rrl 1476443 n.2786G>T non_coding_transcript_exon_variant 0.74
rrl 1476455 n.2798C>A non_coding_transcript_exon_variant 0.78
rrl 1476456 n.2799A>T non_coding_transcript_exon_variant 0.77
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.75
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.77
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.97
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 0.36
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 0.57
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 0.8
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.67
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.67
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.67
inhA 1674243 c.42A>G synonymous_variant 1.0
inhA 1674249 c.48C>T synonymous_variant 1.0
inhA 1674279 c.78A>G synonymous_variant 1.0
inhA 1674285 c.84A>G synonymous_variant 1.0
inhA 1674300 c.99C>G synonymous_variant 1.0
inhA 1674304 p.Gln35Glu missense_variant 1.0
inhA 1674315 c.114C>G synonymous_variant 1.0
inhA 1674342 c.141T>C synonymous_variant 1.0
inhA 1674352 p.Thr51Ala missense_variant 1.0
inhA 1674387 c.186A>G synonymous_variant 1.0
inhA 1674703 c.502T>C synonymous_variant 1.0
inhA 1674714 c.513C>G synonymous_variant 1.0
inhA 1674718 c.517A>C synonymous_variant 1.0
inhA 1674726 c.525G>A synonymous_variant 1.0
inhA 1674729 c.528G>C synonymous_variant 1.0
inhA 1674750 c.549T>C synonymous_variant 1.0
inhA 1674756 c.555T>C synonymous_variant 1.0
inhA 1674765 c.564C>T synonymous_variant 1.0
inhA 1674771 c.570C>G synonymous_variant 1.0
inhA 1674777 c.576C>G synonymous_variant 1.0
inhA 1674780 c.579T>G synonymous_variant 1.0
inhA 1674792 c.591G>C synonymous_variant 1.0
inhA 1674801 c.600T>C synonymous_variant 1.0
inhA 1674816 c.615T>A synonymous_variant 1.0
rpsA 1833874 c.333T>C synonymous_variant 1.0
rpsA 1833928 c.387G>C synonymous_variant 1.0
rpsA 1833949 c.408T>C synonymous_variant 1.0
rpsA 1833979 c.438T>C synonymous_variant 1.0
rpsA 1834366 c.825A>G synonymous_variant 1.0
rpsA 1834375 c.834G>A synonymous_variant 1.0
rpsA 1834378 c.837T>C synonymous_variant 1.0
rpsA 1834411 c.870T>C synonymous_variant 1.0
rpsA 1834417 c.876G>C synonymous_variant 1.0
rpsA 1834423 c.882G>C synonymous_variant 1.0
rpsA 1834546 c.1005T>C synonymous_variant 1.0
rpsA 1834558 c.1017C>G synonymous_variant 1.0
ndh 2102830 c.213G>C synonymous_variant 1.0
ndh 2102842 c.201A>G synonymous_variant 1.0
ndh 2102857 c.186T>C synonymous_variant 1.0
ndh 2102866 c.177C>T synonymous_variant 1.0
ndh 2102872 c.171A>G synonymous_variant 1.0
ndh 2102883 c.160C>T synonymous_variant 1.0
ndh 2102884 c.159G>A synonymous_variant 1.0
kasA 2518627 c.513T>C synonymous_variant 1.0
kasA 2518642 c.528A>G synonymous_variant 1.0
kasA 2518645 c.531G>C synonymous_variant 1.0
kasA 2518663 c.549T>C synonymous_variant 1.0
kasA 2518672 c.558G>C synonymous_variant 1.0
kasA 2518678 c.564C>T synonymous_variant 1.0
kasA 2518681 c.567C>T synonymous_variant 1.0
kasA 2518684 c.570C>G synonymous_variant 1.0
kasA 2518697 p.Cys195Ala missense_variant 1.0
kasA 2518711 c.597A>G synonymous_variant 1.0
kasA 2518714 c.600A>C synonymous_variant 1.0
kasA 2518717 c.603C>G synonymous_variant 1.0
kasA 2518747 c.633C>G synonymous_variant 1.0
folC 2747023 c.576C>G synonymous_variant 1.0
folC 2747032 c.567A>G synonymous_variant 1.0
folC 2747036 p.Asn188Ser missense_variant 1.0
folC 2747059 c.540T>G synonymous_variant 1.0
folC 2747062 c.537A>T synonymous_variant 1.0
folC 2747070 p.Met177Leu missense_variant 1.0
folC 2747074 c.525G>C synonymous_variant 1.0
folC 2747086 c.513A>G synonymous_variant 1.0
folC 2747089 c.510G>C synonymous_variant 1.0
folC 2747778 c.-180T>C upstream_gene_variant 1.0
folC 2747790 c.-192G>C upstream_gene_variant 1.0
folC 2747798 c.-200A>C upstream_gene_variant 1.0
pepQ 2859306 c.1113T>C synonymous_variant 1.0
pepQ 2859318 c.1101A>G synonymous_variant 1.0
pepQ 2859335 c.1084T>C synonymous_variant 1.0
thyX 3067673 c.273C>T synonymous_variant 1.0
thyA 3074307 c.165A>G synonymous_variant 1.0
thyA 3074313 c.159A>G synonymous_variant 1.0
thyA 3074322 c.150C>G synonymous_variant 1.0
thyA 3074325 c.147A>G synonymous_variant 1.0
thyA 3074334 c.138T>C synonymous_variant 1.0
thyA 3074349 c.123T>C synonymous_variant 1.0
thyA 3074360 c.112T>C synonymous_variant 1.0
thyA 3074361 c.111T>C synonymous_variant 1.0
ald 3087233 c.414T>C synonymous_variant 1.0
ald 3087236 c.417A>G synonymous_variant 1.0
ald 3087240 p.Ala141Ser missense_variant 1.0
ald 3087251 c.432T>C synonymous_variant 1.0
ald 3087254 c.435C>G synonymous_variant 1.0
ald 3087257 c.438T>C synonymous_variant 1.0
ald 3087260 c.441C>T synonymous_variant 1.0
ald 3087272 c.453A>G synonymous_variant 1.0
ald 3087281 c.462G>C synonymous_variant 1.0
ald 3087284 c.465C>G synonymous_variant 1.0
ald 3087290 c.471T>C synonymous_variant 1.0
ald 3087311 c.492C>G synonymous_variant 1.0
rpoA 3877737 c.771G>C synonymous_variant 1.0
rpoA 3877743 c.765T>C synonymous_variant 1.0
rpoA 3877764 c.744C>G synonymous_variant 1.0
rpoA 3877770 c.738A>T synonymous_variant 1.0
rpoA 3877776 c.732T>C synonymous_variant 1.0
rpoA 3877782 c.726T>C synonymous_variant 1.0
rpoA 3877818 c.690A>G synonymous_variant 1.0
rpoA 3877839 c.669G>C synonymous_variant 1.0
rpoA 3877962 c.546G>T synonymous_variant 1.0
rpoA 3877989 c.519A>G synonymous_variant 1.0
rpoA 3878385 c.123C>G synonymous_variant 1.0
rpoA 3878409 c.99C>G synonymous_variant 1.0
rpoA 3878430 c.78G>T synonymous_variant 1.0
rpoA 3878442 c.66G>C synonymous_variant 1.0
rpoA 3878454 c.54A>G synonymous_variant 1.0
rpoA 3878472 p.Asp12Glu missense_variant 1.0
rpoA 3878480 p.Ser10Ala missense_variant 1.0
clpC1 4038878 c.1827A>G synonymous_variant 1.0
clpC1 4038908 c.1797C>G synonymous_variant 1.0
clpC1 4038914 c.1791G>C synonymous_variant 1.0
clpC1 4038923 c.1782A>G synonymous_variant 1.0
clpC1 4039790 c.915C>G synonymous_variant 1.0
clpC1 4039814 c.891C>G synonymous_variant 1.0
clpC1 4039817 c.888A>T synonymous_variant 1.0
clpC1 4039820 c.885T>C synonymous_variant 1.0
clpC1 4039823 c.882T>C synonymous_variant 1.0
clpC1 4039831 c.874T>C synonymous_variant 1.0
clpC1 4039850 c.855T>C synonymous_variant 1.0
clpC1 4039952 c.753T>C synonymous_variant 1.0
clpC1 4039958 c.747G>C synonymous_variant 1.0
clpC1 4039991 c.714G>C synonymous_variant 1.0
clpC1 4040090 c.615T>C synonymous_variant 1.0
embC 4240780 c.918T>C synonymous_variant 1.0
embC 4240783 c.921G>C synonymous_variant 1.0
embC 4240786 c.924C>T synonymous_variant 1.0
embC 4240789 c.927T>C synonymous_variant 1.0
embC 4240807 c.945C>T synonymous_variant 1.0
embC 4240816 c.954C>T synonymous_variant 1.0
embC 4240819 c.957A>G synonymous_variant 1.0
embC 4240828 c.966G>C synonymous_variant 1.0
embC 4240831 c.969T>G synonymous_variant 1.0
embC 4240858 c.996G>C synonymous_variant 1.0
embC 4240867 c.1005T>A synonymous_variant 1.0
embC 4240870 c.1008T>C synonymous_variant 1.0
embC 4240879 c.1017G>C synonymous_variant 1.0
embC 4240885 c.1023T>C synonymous_variant 1.0
embC 4240911 p.Ala350Val missense_variant 1.0
embC 4240921 c.1059C>G synonymous_variant 1.0
embC 4240936 c.1074A>G synonymous_variant 1.0
embC 4241002 c.1140G>C synonymous_variant 1.0
embC 4241140 c.1278A>G synonymous_variant 1.0
embA 4244918 c.1686G>A synonymous_variant 1.0
embA 4244921 c.1689C>G synonymous_variant 1.0
embA 4244933 c.1701A>G synonymous_variant 1.0
embA 4244936 c.1704C>G synonymous_variant 1.0
embA 4244970 p.Leu580Val missense_variant 1.0
embB 4246280 c.-234G>C upstream_gene_variant 1.0
embB 4246292 c.-222A>G upstream_gene_variant 1.0
embA 4246299 p.Ser1023Ala missense_variant 1.0
embA 4246305 p.Ser1025Glu missense_variant 1.0
embB 4246316 c.-198T>C upstream_gene_variant 1.0
embB 4246352 c.-162G>C upstream_gene_variant 1.0
embA 4246359 p.Ala1043Ser missense_variant 1.0
embB 4246373 c.-141T>C upstream_gene_variant 1.0
embB 4246376 c.-138G>C upstream_gene_variant 1.0
embB 4246385 c.-129T>C upstream_gene_variant 1.0
embB 4246400 c.-114G>C upstream_gene_variant 1.0
embA 4246413 p.His1061Tyr missense_variant 1.0
embB 4247437 c.924A>G synonymous_variant 1.0
embB 4247470 c.957T>C synonymous_variant 1.0
embB 4247491 c.978G>C synonymous_variant 1.0
embB 4247497 c.984T>C synonymous_variant 1.0
embB 4247500 c.987C>G synonymous_variant 1.0
embB 4247512 c.999T>C synonymous_variant 1.0
embB 4247539 c.1026T>C synonymous_variant 1.0
embB 4247550 p.Ala346Asp missense_variant 1.0
embB 4247554 c.1041T>C synonymous_variant 1.0
embB 4249543 c.3030G>C synonymous_variant 1.0
embB 4249558 c.3045A>C synonymous_variant 1.0
embB 4249573 c.3060T>C synonymous_variant 1.0
embB 4249580 p.Leu1023Met missense_variant 1.0
embB 4249594 c.3081G>C synonymous_variant 1.0
embB 4249600 c.3087A>G synonymous_variant 1.0
embB 4249609 c.3096T>C synonymous_variant 1.0
aftB 4269153 c.-317C>G upstream_gene_variant 1.0
aftB 4269261 c.-425G>A upstream_gene_variant 1.0
aftB 4269282 c.-446G>A upstream_gene_variant 1.0
aftB 4269285 c.-449T>G upstream_gene_variant 1.0
aftB 4269291 c.-455A>C upstream_gene_variant 1.0