EBG00000313325 - n.1354delC
Drug resistance types
50 Sensitive
8 RR-TB
8 HR-TB
14 MDR-TB
15 Pre-XDR-TB
0 XDR-TB
20 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.1.1 | 6 |
| lineage4.3.4.2.1 | 2 |
| lineage4.1.2 | 3 |
| lineage3 | 4 |
| lineage4.9 | 34 |
| lineage4.6.1.2 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4 | 4 |
| lineage2.2.1 | 14 |
| lineage4.8 | 2 |
| lineage4.4.1.1 | 2 |
| lineage4.2.1 | 1 |
| lineage4.2.1;lineage2.2.1 | 1 |
| lineage4.3.3 | 1 |
| lineage4.9.1 | 1 |
| lineage3.1.1 | 2 |
| lineage4;lineage3.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.9;La1.8.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.7 | 1 |
| lineage4.1.1.3 | 4 |
| lineage4.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage2.2 | 2 |
| lineage4.9;lineage4.2.1 | 1 |
| lineage3.1.2.1 | 1 |
| 3 | |
| lineage2.2.2 | 3 |
| lineage3;lineage2.2 | 2 |
| lineage4.3.2 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.9;lineage4.3 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.3.4.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage1.2.2.2 | 1 |
| La1.8.1 | 1 |
| lineage4.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 115 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7535073 | Sensitive | lineage4.6.1.1 | None | SRR6855896 | Other | lineage4.3.4.2.1 | None | SRR7131114 | Other | lineage4.1.2 | None | SRR7535074 | Sensitive | lineage3 | None | ERR502942 | Sensitive | lineage4.9 | None | SRR7535053 | Sensitive | lineage3 | None | SRR7535077 | MDR-TB | lineage4.6.1.2 | None | SRR7535079 | Sensitive | lineage4.6.1.1 | None | SRR7646056 | Other | lineage4.2.1.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR7645853 | MDR-TB | lineage2.2.1 | None | SRR7535081 | Sensitive | lineage4.6.1.1 | None | SRR7535080 | HR-TB | lineage4.8 | None | SRR7645856 | Sensitive | lineage4.4.1.1 | None | SRR7755706 | MDR-TB | lineage4.2.1 | None | SRR7755705 | MDR-TB | lineage4.2.1;lineage2.2.1 | None | ERR323057 | Sensitive | lineage4.9 | None | ERR037235 | Sensitive | lineage4.9 | None | ERR323067 | Sensitive | lineage4.3.4.2.1 | None | ERR3468549 | Sensitive | lineage4.9 | None | ERR10796619 | Other | lineage4.3.3 | None | ERR126611 | Sensitive | lineage4.9.1 | None | ERR3439235 | Sensitive | lineage4.9 | None | ERR3283034 | Sensitive | lineage4.9 | None | ERR3439294 | Other | lineage4.9 | None | ERR405217 | Sensitive | lineage2.2.1 | None | ERR405216 | Sensitive | lineage3.1.1 | None | ERR3468754 | Sensitive | lineage4.9 | None | ERR3797078 | Sensitive | lineage4.9 | None | ERR405209 | Sensitive | lineage4 | None | ERR405222 | Sensitive | lineage4;lineage3.1 | None | ERR473340 | Sensitive | lineage1.1.2 | None | ERR4188072 | Other | lineage4.9;La1.8.1 | None | ERR473279 | Other | lineage4.9 | None | ERR473311 | Sensitive | lineage4.9 | None | ERR5979817 | Sensitive | lineage4.9 | None | ERR5865065 | MDR-TB | lineage4.8 | None | ERR5865230 | MDR-TB | lineage2.2.1 | None | ERR5979787 | Other | lineage4.9 | None | ERR970453 | RR-TB | lineage4.1.2 | None | ERR736825 | Sensitive | lineage4.9 | None | ERR760878 | MDR-TB | lineage4.1.2.1.1 | ar | ERR773804 | Sensitive | lineage4.9 | None | ERR6197025 | Other | lineage4.7 | None | ERR736850 | Sensitive | lineage4.9 | None | ERR751414 | MDR-TB | lineage4 | None | ERR970455 | RR-TB | lineage4.1.2 | None | ERR970458 | RR-TB | lineage4.1.1.3 | None | ERR970457 | RR-TB | lineage4.1.1.3 | None | SRR1002681 | HR-TB | lineage4.1 | None | ERR972802 | RR-TB | lineage4.1.1.3 | None | ERR972801 | RR-TB | lineage2.2.1.1 | None | SRR057732 | Sensitive | lineage4.1.1.2 | ca | SRR1062868 | HR-TB | lineage4.9 | None | SRR1013530 | HR-TB | lineage4.9 | None | SRR1166181 | MDR-TB | lineage4 | None | SRR1062869 | Pre-XDR-TB | lineage4.9 | None | SRR1165236 | Pre-XDR-TB | lineage2.2 | None | SRR1168955 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR1167264 | Pre-XDR-TB | lineage2.2 | None | SRR1172751 | HR-TB | lineage3.1.2.1 | None | SRR1173139 | Sensitive | lineage4.9 | None | SRR1173344 | Sensitive | lineage4.6.1.1 | None | SRR1173269 | Sensitive | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1173343 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173174 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173335 | Sensitive | lineage4.9 | None | SRR1173380 | Pre-XDR-TB | lineage3;lineage2.2 | None | SRR1173377 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173704 | Sensitive | lineage4.6.1.1 | None | SRR1173508 | Sensitive | lineage4.9 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1173705 | Other | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173768 | Sensitive | lineage4.9 | None | SRR1173766 | Sensitive | lineage4.9 | None | SRR1173764 | Sensitive | lineage4.9 | None | SRR1173800 | Pre-XDR-TB | lineage3;lineage2.2 | None | SRR1173833 | Other | lineage4.9 | None | SRR13591376 | Sensitive | lineage4.3.2 | None | SRR1173865 | Sensitive | lineage4.9 | None | SRR13591377 | Sensitive | lineage4.1.1.3 | None | SRR1174277 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02567670 | Sensitive | lineage4.6.1.1 | None | SRR14334195 | Pre-XDR-TB | lineage2.2.1 | None | SRR15315833 | Sensitive | lineage4.9 | None | ERR4814573 | Other | lineage1.1.3.2 | None | ERR164004 | Sensitive | lineage4.9;lineage4.3 | None | ERR4814723 | Sensitive | lineage4.1.2.1 | gb | SRR14782555 | Pre-XDR-TB | lineage2.2.1 | None | ERR2124091 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4816454 | Sensitive | lineage1.1.3.1 | None | ERR2124088 | Other | lineage4.4.1.1 | None | ERR2124092 | HR-TB | lineage1.2.2.2 | None | ERR2124090 | MDR-TB | lineage2.2.1 | None | ERR245790 | Sensitive | None | ERR2245344 | Sensitive | lineage3.1.1 | no | ERR2510736 | Other | lineage4.1.2.1 | None | SAMN02567685 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034791 | RR-TB | None | SRR3743190 | Sensitive | lineage4.1.2.1 | None | SAMN02403473 | Pre-XDR-TB | lineage2.2.2 | None | ERR4817817 | Sensitive | lineage3 | None | SRR5152904 | Other | lineage2.2.1 | None | ERR1873445 | MDR-TB | lineage2.2.1 | None | SRR6045450 | Other | lineage4.9 | None | ERR2747678 | Other | La1.8.1 | None | SRR6257038 | HR-TB | lineage4.1 | None | SRR6896576 | Other | lineage2.2.1 | None | SRR5152926 | MDR-TB | lineage2.2.1 | None | ERR1873557 | Pre-XDR-TB | lineage2.2.1 | None | ERR2179699 | Other | lineage4.4.2 | cn | SRR6046152 | Other | lineage4.9 | None | SRR6045162 | Sensitive | lineage4.9 | None |
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