Rv1630 - c.564C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
54 Sensitive
32 RR-TB
28 HR-TB
12 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
47 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 29 |
| lineage2.2.1.1 | 3 |
| lineage4.9 | 79 |
| lineage2.2.1;lineage4.9 | 3 |
| lineage3 | 6 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage2.2.1 | 7 |
| lineage4.9.1 | 2 |
| lineage4.1.1.3 | 2 |
| La1.2 | 2 |
| lineage4.8;lineage4.9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage6.1.1 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage6 | 1 |
| lineage4 | 2 |
| La1.7.1 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| 3 | |
| lineage2.2.1;lineage4 | 2 |
| lineage1.1.1 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage4.6.5 | 2 |
| La2;lineage4.9 | 2 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.9;lineage9 | 2 |
| La1.8.1 | 1 |
| La1.4 | 1 |
| lineage4.4 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage3.1.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.2.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 176 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR363456 | Sensitive | lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR1173281 | Other | lineage3 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR978733 | RR-TB | lineage4.8 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR978726 | RR-TB | lineage4.8 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4816852 | Other | lineage4.9 | None | ERR978693 | Other | lineage4.8 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR2228890 | Other | lineage4.8;lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR9787336 | RR-TB | lineage6 | None | SRR1181349 | Sensitive | lineage4 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4769493 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR13245829 | Sensitive | lineage2.2.1 | None | SRR29097037 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR987722 | MDR-TB | None | ERR978757 | RR-TB | lineage4.8 | None | SRR28351408 | Pre-XDR-TB | lineage2.2.1;lineage4 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | ERR017781 | Other | lineage3 | None | SRR6044952 | Other | lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819241 | Other | lineage4.9 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR978761 | Other | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR978752 | Other | lineage4.8 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR176741 | Other | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR11462861 | Other | La1.8.1 | None | SRR16278274 | Other | La1.4 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | ERR2228900 | Other | lineage4.8 | None | SRR29096150 | Other | lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978735 | Other | lineage4.8 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675312 | Sensitive | lineage4.9 | None | ERR11466062 | Sensitive | lineage4.9.1 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4817069 | RR-TB | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | DRR188494 | Sensitive | lineage2.2.1 | None | ERR4798823 | HR-TB | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR4769427 | Other | La1.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR9786639 | Sensitive | lineage4.8 | None | SRR6045371 | Other | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR29097026 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None |
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