SRR3675501
|
Other
|
La1.7;lineage4.9
|
None
|
ERR4821053
|
RR-TB
|
lineage3
|
None
|
ERR4816717
|
RR-TB
|
lineage3.1.2.1
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|
SRR6046299
|
Other
|
lineage4.3.1;lineage4.9;lineage6
|
None
|
ERR5311100
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675550
|
RR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
ERR323036
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR124642
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
ERR7801176
|
RR-TB
|
lineage4.6.5
|
None
|
ERR163965
|
Sensitive
|
lineage4.3.4.2.1
|
mw
|
ERR4872322
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR978752
|
Other
|
lineage4.8
|
None
|
ERR736837
|
Pre-XDR-TB
|
lineage4.9
|
None
|
ERR176741
|
Other
|
lineage4.9
|
None
|
SRR3675446
|
RR-TB
|
lineage4.9
|
None
|
ERR4799025
|
Other
|
lineage4.8
|
None
|
SRR6046492
|
Other
|
lineage4.9
|
None
|
ERR978761_ERR978762_ERR978760
|
RR-TB
|
lineage4.8
|
None
|
SRR12708407
|
HR-TB
|
lineage4.3.2.1
|
None
|
ERR4816551
|
HR-TB
|
lineage4.1.1.3
|
None
|
SAMEA3501065
|
RR-TB
|
lineage4.8
|
None
|
ERR978755_ERR978756_ERR978754_ERR978757
|
RR-TB
|
lineage4.8
|
None
|
SRR5341330
|
Other
|
lineage4.9
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|
SRR6046593
|
Other
|
lineage4.9
|
None
|
ERR323064
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4817692
|
HR-TB
|
lineage1.1.2;lineage4
|
None
|
SRR6046482
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
SRR5341470
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
SAMN02380990
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR2228890
|
Other
|
lineage4.8;lineage4.9
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR5311082
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
ERR2041726
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR3675481
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6458421
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4814639
|
HR-TB
|
lineage4.9
|
None
|
ERR485006
|
HR-TB
|
lineage4.9
|
None
|
SRR3675561
|
Other
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR278594
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR6045948
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675518
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR3797062
|
RR-TB
|
lineage4.9
|
None
|
ERR176766
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR14782405
|
HR-TB
|
lineage4.9
|
None
|
ERR323055
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675488
|
Other
|
La1.7;lineage4.9
|
None
|
ERR978734_ERR978733_ERR978735
|
RR-TB
|
lineage4.8
|
None
|
ERR4769452
|
Other
|
lineage4.9
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
SRR1183111
|
HR-TB
|
lineage4.9
|
None
|
ERR8976043
|
HR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|
ERR5311090
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2041725
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6046485
|
Other
|
lineage4.9
|
None
|
ERR323054
|
MDR-TB
|
La3;M.canetti;lineage3.1
|
None
|
ERR323038
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SAMEA3501070
|
RR-TB
|
lineage4.8
|
None
|
SRR5341456
|
Other
|
lineage4.9
|
None
|
ERR4811493
|
HR-TB
|
lineage4.9
|
None
|
SRR6046196
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
SRR26159047
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
ERR987722
|
MDR-TB
|
|
None
|
ERR124652
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4818851
|
RR-TB
|
lineage4.4.1.1
|
None
|
SRR1162864
|
Other
|
lineage4.1.2.1
|
None
|
ERR3283055
|
HR-TB
|
lineage4.9
|
None
|
SRR1180226
|
HR-TB
|
lineage4.9
|
None
|
SRR6832787
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6045555
|
Other
|
lineage4.9
|
None
|
SRR11462861
|
Other
|
La1.8.1
|
None
|
SRR17832802
|
HR-TB
|
lineage3
|
None
|
SRR6046385
|
Sensitive
|
lineage4.9
|
None
|
SRR3675444
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6046141
|
Other
|
lineage4.9
|
None
|
ERR6358837
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR3675586
|
Other
|
M.canetti;lineage4.6.4;lineage4.9
|
None
|
ERR038268
|
HR-TB
|
La3;M.canetti;lineage4.8;lineage4.9
|
None
|
SRR6045832
|
Other
|
lineage4.9
|
None
|
ERR3445504
|
Other
|
lineage4.9;lineage6.1.3
|
None
|
ERR752229
|
Other
|
lineage4.5
|
None
|
SRR3675508
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3468607
|
Other
|
lineage4.9
|
None
|
SRR1165506
|
Other
|
lineage4.1.2.1
|
None
|
SRR1175127
|
Other
|
lineage2.2.1.2
|
None
|
SRR6044875
|
Sensitive
|
lineage4.9
|
None
|
ERR4815079
|
RR-TB
|
lineage3
|
None
|
SRR11342649
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1735596
|
RR-TB
|
lineage4.9
|
None
|
SRR5535933
|
Other
|
lineage4.9
|
None
|
ERR5162090
|
RR-TB
|
lineage4.9
|
None
|
ERR473277
|
HR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR6045053
|
Other
|
lineage4
|
None
|
SRR6046577
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6046046
|
Other
|
lineage4.9
|
None
|
SRR7240476
|
Other
|
La1.8.1
|
None
|
ERR4769427
|
Other
|
La1.2
|
None
|
ERR2693228
|
RR-TB
|
lineage4.9
|
None
|
SRR20969731
|
Other
|
lineage2.2.1
|
None
|
SRR6045548
|
Sensitive
|
lineage4.9
|
None
|
SRR16156832
|
RR-TB
|
lineage2.2;lineage4
|
None
|
ERR323040
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR3675486
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR978762
|
Other
|
lineage4.8
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
ERR1063855
|
Other
|
lineage4.9
|
None
|
SRR6046133
|
HR-TB
|
lineage4.9
|
None
|
SRR11342660
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6045219
|
HR-TB
|
lineage4.9
|
None
|
ERR5311091
|
Other
|
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
ERR4769450
|
Other
|
lineage4.9
|
None
|
ERR4798648
|
MDR-TB
|
lineage3.1.2.2
|
None
|
ERR4798504
|
RR-TB
|
lineage3
|
None
|
ERR9119138
|
RR-TB
|
M.canetti;lineage4.3.1;lineage4.9
|
None
|
ERR3283016
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3797036
|
HR-TB
|
lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR1184308
|
Sensitive
|
lineage4.9
|
None
|
SRR1791696
|
Other
|
La1.8.1
|
None
|
ERR1035162
|
Other
|
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9
|
None
|
SRR29096150
|
Other
|
lineage4.9
|
None
|
ERR212121
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
ERR2229143
|
RR-TB
|
lineage4.9
|
None
|
SRR3675515
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323053
|
MDR-TB
|
La2;lineage4.9;lineage9
|
None
|
ERR5311089
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
SRR6045290
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4188350
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR8975532
|
HR-TB
|
lineage4.3.2.1
|
None
|
ERR3290633
|
Other
|
lineage4.2;lineage4.6.3;lineage4.9.1
|
None
|
SRR6046594
|
Sensitive
|
lineage4.9
|
None
|
SRR16156697
|
RR-TB
|
lineage2.2.1
|
None
|
ERR5311096
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283017
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9
|
None
|
SRR5341418
|
Other
|
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7
|
None
|
ERR403298
|
MDR-TB
|
M.canetti;lineage4.2
|
None
|
ERR6359082
|
Other
|
lineage4.9
|
None
|
ERR386953
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
SRR20970016
|
Other
|
lineage2.2
|
None
|
SRR3675390
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
SRR5341412
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR6325448
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR978757
|
RR-TB
|
lineage4.8
|
None
|
ERR126600
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR502889
|
Other
|
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9
|
None
|
SRR28119827
|
Other
|
La3;lineage4.9
|
None
|
ERR4188322
|
Other
|
lineage4.6.4;lineage4.9
|
None
|
ERR736865
|
HR-TB
|
lineage4.3.2;lineage4.9
|
None
|
SRR3675243
|
Other
|
lineage4.9
|
None
|
SRR3675545
|
Other
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6046878
|
Other
|
lineage4.9
|
None
|
SRR6045217
|
Sensitive
|
lineage4.9
|
None
|
ERR4817915
|
Other
|
lineage4.9
|
None
|
ERR3797016
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR29096410
|
Other
|
lineage4.9
|
None
|
SRR1140712
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR25827418
|
XDR-TB
|
lineage3.1;lineage9
|
None
|
ERR4188342
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4808964
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1172310
|
HR-TB
|
lineage4.9
|
None
|
SRR3675270
|
Other
|
lineage4.9
|
None
|
ERR987729
|
HR-TB
|
lineage3.1.2.1;lineage3.1.2.2
|
None
|
ERR736817
|
HR-TB
|
lineage4.3.4
|
None
|
ERR323058
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2693242
|
RR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR2693239
|
RR-TB
|
M.canetti;lineage2.1;lineage4
|
None
|
ERR4809333
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR11662696
|
MDR-TB
|
La1.6;La3;M.canetti;lineage4.2.2
|
None
|
ERR323034
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage3.1
|
None
|
ERR8665994
|
Other
|
lineage4.9
|
None
|
ERR124651
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
ERR323039
|
HR-TB
|
La2;lineage4.9
|
None
|
SRR1163221
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1162740
|
Other
|
lineage4.1.2.1
|
None
|
ERR126608
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1166821
|
Other
|
lineage4.1.2.1
|
None
|
SRR6325445
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR5311103
|
RR-TB
|
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9
|
None
|
SRR3675269
|
RR-TB
|
lineage4.9
|
None
|
ERR4830353
|
Other
|
La1.7
|
None
|
ERR6359066
|
HR-TB
|
lineage4.9
|
None
|
SRR3675267
|
Other
|
La1.7;lineage4.9
|
None
|
ERR1873396
|
Pre-XDR-TB
|
M.canetti;lineage2.2
|
None
|
SRR14782054
|
Other
|
lineage4.9
|
None
|
ERR978750_ERR978752_ERR978751
|
RR-TB
|
lineage4.8
|
None
|
SRR1174897
|
MDR-TB
|
lineage4.9;lineage9
|
None
|
SRR11972417
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3468544
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR7240033
|
Other
|
La1.2;La1.8.1
|
None
|
ERR4821704
|
Other
|
lineage4.3.3
|
None
|
SRR22424787
|
Sensitive
|
lineage4.9
|
None
|
ERR4798406
|
MDR-TB
|
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3
|
None
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
DRR188519
|
Other
|
lineage4.4.2
|
None
|
ERR171142
|
Other
|
lineage3.1.1;lineage4.9
|
None
|
ERR4596902
|
MDR-TB
|
lineage3
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
ERR126618
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
SRR1173767
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR158583
|
MDR-TB
|
La3;M.canetti;lineage2;lineage4.2;lineage4.3
|
None
|
ERR5311099
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3275215
|
RR-TB
|
lineage4.1.2.1
|
nl
|
ERR126597
|
HR-TB
|
lineage4.4.1.2
|
None
|
SRR6046824
|
MDR-TB
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
SRR3675450
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR1172796
|
Sensitive
|
lineage2.2.1.2
|
None
|
ERR176751
|
Other
|
lineage4.9
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
ERR3797046
|
HR-TB
|
lineage4.9
|
None
|
ERR3799304
|
Other
|
lineage6.1.1
|
None
|
ERR978735
|
Other
|
lineage4.8
|
None
|
ERR4799513
|
HR-TB
|
lineage2.2
|
None
|
SRR21732954
|
Sensitive
|
lineage4.9
|
None
|
ERR6358991
|
HR-TB
|
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3
|
None
|
SRR3675320
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9
|
None
|
ERR323033
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3077978
|
RR-TB
|
lineage1.1
|
None
|
ERR1873393
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
SRR1165584
|
Other
|
lineage4.1.2.1
|
None
|
SAMEA3501052
|
RR-TB
|
lineage4.8
|
None
|
SRR13861400
|
Other
|
lineage4.9
|
None
|
SRR13861553
|
Other
|
lineage4.9
|
None
|
SAMEA3501067
|
RR-TB
|
lineage4.8
|
None
|
SRR1049582
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR4817069
|
RR-TB
|
|
None
|
SRR6325442
|
HR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR2509673
|
Other
|
lineage2.2.1
|
None
|
ERR4769497
|
Other
|
La1;lineage4.9
|
None
|
SRR6044815
|
Other
|
lineage4.9
|
None
|
SRR11342673
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR5431730
|
Other
|
La1.8.1
|
None
|
ERR323047
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR736875
|
HR-TB
|
lineage4.9
|
None
|
SRR1173453
|
Other
|
lineage4.4.1.1
|
None
|
ERR9786639
|
Sensitive
|
lineage4.8
|
None
|
ERR2446118
|
Other
|
lineage4.1.2.1
|
nl
|
SRR6045002
|
RR-TB
|
lineage4.9
|
None
|
SRR1640750
|
Other
|
|
None
|
ERR5311097
|
Sensitive
|
lineage4.2;lineage4.6.3;lineage4.9
|
None
|
ERR133986
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7
|
None
|
ERR323060
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR502524
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
ERR5311098
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR6326069
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
SRR3675505
|
Other
|
La1.7;M.canetti;lineage4.9
|
None
|
ERR323044
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR3797023
|
HR-TB
|
La1.8.1
|
None
|
ERR4798823
|
HR-TB
|
lineage4
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR176658
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675322
|
HR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
ERR2693229
|
RR-TB
|
La3;M.canetti;lineage4.9
|
None
|
SRR6045359
|
Sensitive
|
lineage4.9
|
None
|
SRR29097026
|
Other
|
lineage4.9
|
None
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323063
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR9787014
|
Other
|
lineage6.1.1
|
None
|
ERR067681
|
MDR-TB
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
SRR12142339
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6046514
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283026
|
HR-TB
|
lineage4.2;lineage4.6.3;lineage4.9.1
|
None
|
ERR5311083
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311079
|
Other
|
La1.6;La3;M.canetti;lineage4.2;lineage4.9
|
None
|