EBG00000313339 - n.2508T>A
Drug resistance types
62 Sensitive
32 RR-TB
23 HR-TB
42 MDR-TB
22 Pre-XDR-TB
1 XDR-TB
132 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 15 |
| lineage4.3.4.2.1 | 11 |
| lineage4.8 | 8 |
| lineage4.9.1 | 1 |
| lineage4.9 | 75 |
| lineage4.2.1.1 | 2 |
| lineage2.2.1 | 38 |
| lineage4.1.1.3 | 6 |
| lineage1.1.1.1 | 2 |
| lineage4.3.4.1 | 10 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage1.1.2 | 2 |
| lineage1.1.2;lineage4 | 1 |
| lineage2.2.2 | 3 |
| La1.6 | 1 |
| lineage4.1.1.2 | 2 |
| lineage4.3.3 | 10 |
| lineage4.3.4 | 1 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.2.1 | 6 |
| lineage4.1.2.1 | 13 |
| lineage2.1 | 1 |
| lineage4.3 | 1 |
| lineage6.3.1 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La2;lineage4.9 | 1 |
| lineage4 | 3 |
| lineage2.2.1;lineage4.2.1 | 1 |
| La1.2;La1.8.1 | 1 |
| La1.2 | 3 |
| La1.8.1 | 16 |
| lineage4.4.1.1 | 2 |
| La1.7.1 | 3 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.6.1.2 | 1 |
| lineage4.6.1.1 | 3 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage6.1.3 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage5.1.1 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage1.1.3.1 | 2 |
| lineage4.5 | 2 |
| lineage4.4.1.2 | 1 |
| lineage4.4.2 | 2 |
| lineage6.2.2 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.3.4.1;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| lineage4.3.2.1 | 3 |
| lineage2.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage1.2.2.2 | 3 |
| La2;lineage2.2 | 1 |
| lineage4.3.3;lineage4.8 | 4 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage3.1.1 | 3 |
| lineage4.3;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage4.3.2 | 2 |
| La1.3 | 2 |
| lineage2.2.1.1 | 3 |
| lineage1.2.1.2.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage1.1.2;lineage6.2.3 | 1 |
| lineage4.3.4.2 | 1 |
| lineage6.1.2 | 1 |
| lineage4.1.2 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.4 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La2 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.3.4.2.1 | 1 |
| lineage3;lineage4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 314 |
Geographic prevalence
Country level data for this variant is available for 10 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16627757 | Sensitive | lineage3 | None | SRR1140753 | RR-TB | lineage4.3.4.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR037504 | Other | lineage4.9.1 | None | SRR12199468 | Sensitive | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR4817915 | Other | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SRR1062918 | Other | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4817703 | Other | lineage1.1.1.1 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | SRR14782760 | Sensitive | lineage4.3.4.1 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR15522850 | HR-TB | lineage1.1.2 | None | ERR181708 | RR-TB | lineage1.1.2;lineage4 | None | SRR10869285 | Pre-XDR-TB | lineage2.2.2 | None | SRR5341373 | Other | lineage4.9 | None | SRR10993951 | RR-TB | La1.6 | None | ERR176651 | Other | lineage4.9 | None | SRR1208436 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR7069473 | Other | lineage4.1.1.2 | None | SRR7755657 | Other | lineage4.8 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4769518 | Sensitive | lineage4.9 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR6824624 | Sensitive | lineage2.2.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR6982246 | RR-TB | lineage4.1.2;lineage4.9 | None | ERR4819641 | Other | lineage4.6.2.2 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR11465563 | Other | lineage4.1.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | ERR11466444 | Sensitive | lineage4.3.4.1 | None | SRR11662417 | Pre-XDR-TB | lineage2.1 | None | ERR11466445 | Sensitive | lineage4.3.4.1 | None | SRR6397640 | Other | lineage4.2.1.1 | None | ERR4816322 | Other | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341400 | Sensitive | lineage4.9 | None | ERR2229637 | Sensitive | lineage4.8 | dk | SRR1208439 | Sensitive | lineage4.9 | None | SRR10869292 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR502523 | Other | lineage6.3.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR9119669 | MDR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR7645927 | Other | lineage4.8 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR1209048 | Other | lineage4.9 | None | ERR4811708 | HR-TB | lineage4 | None | ERR4769525 | Sensitive | lineage4.9 | None | SRR7755652 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR4769503 | Other | La1.2 | None | SRR7236374 | Other | La1.8.1 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR4820723 | Other | lineage4.4.1.1 | None | SRR21469200 | Other | La1.7.1 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR6358728 | MDR-TB | lineage4.6.1.2 | None | ERR6338285 | Other | La1.2 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR502473 | RR-TB | lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR1334032 | Other | lineage6.1.3 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR6785301 | Sensitive | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | ERR502517 | Other | lineage5.1.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR11465490 | Sensitive | lineage4.1.2.1 | None | ERR5311077 | Other | La1.8.1 | None | SRR5818460 | Other | lineage4.9 | None | ERR3276144 | Other | lineage3 | nl | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR1173170 | Other | lineage4.9 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR11465829 | Sensitive | lineage4.9 | None | SRR21737226 | Sensitive | lineage4.5 | None | SRR2101774 | Sensitive | lineage2.2.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR4820484 | Sensitive | lineage4.8 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR21714038 | Sensitive | lineage4.3.3 | None | ERR3324325 | MDR-TB | lineage4.6.2.2 | None | ERR9787142 | Sensitive | lineage6.2.2 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR6982053 | Sensitive | lineage4.3.4.1;lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | SRR1196478 | Other | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR5818397 | Other | lineage4.9 | None | SRR6982213 | Sensitive | lineage4.3.2.1 | None | SRR10315558 | RR-TB | lineage2.2.1 | None | ERR4816852 | Other | lineage4.9 | None | SRR6044952 | Other | lineage4.9 | None | SRR1792247 | Other | La1.7.1 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR1202421 | Other | lineage4.9 | None | SRR7069931 | Other | lineage4.2.2.2 | None | SRR12199409 | Other | lineage1.2.2.2 | None | SRR1208775 | Other | lineage4.9 | None | SRR7645971 | Other | lineage2.2.1 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR502481 | RR-TB | lineage4.9 | None | SRR5818446 | Other | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR038289 | Other | lineage4.3.3 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | ERR2179857 | Sensitive | lineage4 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR5341430 | Other | lineage3 | None | SRR1140724 | Other | lineage2.2.1 | None | ERR11465301 | Other | lineage4.3.4.2.1 | None | ERR4769424 | Sensitive | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR5087596 | Other | La1.8.1 | None | SRR1208334 | Other | lineage4.9 | None | ERR2179850 | Sensitive | lineage4 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4812328 | Other | lineage4.3.3 | pe | ERR5979454 | Pre-XDR-TB | lineage3 | None | SRR7645928 | Other | lineage4.7 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR18149455 | Sensitive | lineage4.1.2.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | SRR6981977 | Sensitive | lineage2.2.1 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR3275190 | Other | lineage3 | nl | ERR4769495 | Other | La1.3 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR11465562 | Other | lineage4.1.2.1 | None | ERR4814976 | Other | lineage4.9 | None | SRR13199734 | Other | La1.2 | None | ERR2179695 | Sensitive | lineage4.5 | None | ERR3804140 | Sensitive | lineage6.2.2 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR1792024 | Other | La1.8.1 | None | ERR4769506 | Sensitive | lineage4.9 | None | ERR502474 | RR-TB | lineage4.9 | None | SRR5074094 | HR-TB | lineage2.2.1.1 | None | ERR171135 | Other | lineage2.2.1 | za | ERR11465487 | Sensitive | lineage4.1.2.1 | None | SRR1184308 | RR-TB | lineage4.9 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | SRR11972274 | RR-TB | lineage1.2.1.2.1 | None | SRR1208473 | Other | lineage4.9 | None | ERR3324375 | Other | lineage1.1.3.2 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173281 | Other | lineage3 | None | SRR15508556 | Other | lineage4.3.4.1 | None | ERR3468488 | Other | La1.8.1 | None | DRR185024 | Other | lineage2.2.2 | None | SRR1208283 | Sensitive | lineage4.9 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR473332 | Other | lineage4.9 | None | SRR6824572 | MDR-TB | lineage2.2.1 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | ERR6866186 | Sensitive | lineage4.8 | None | SRR1209067 | Other | lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | SRR1208238 | Other | lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1791940 | Other | La1.8.1 | None | SRR1173185 | Other | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR9787030 | RR-TB | lineage6.1.2 | None | SRR1173770 | Other | lineage4.9 | None | ERR11465152 | Sensitive | lineage4.3.4.1 | None | SRR1208872 | Sensitive | lineage4.9 | None | SRR7236108 | Other | La1.8.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR10808496 | Sensitive | lineage4.3.2 | None | SRR1792012 | Other | La1.8.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR1792011 | Other | La1.8.1 | None | ERR11465581 | MDR-TB | lineage4.4.1.1 | None | ERR245740 | Sensitive | lineage4.1.2 | None | ERR181824 | MDR-TB | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR6866807 | RR-TB | lineage4.9 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1792022 | Other | La1.8.1 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | SRR1202516 | Other | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4769505 | Other | lineage4.9 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | SRR11871419 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769493 | Other | lineage4.9 | None | ERR9787079 | Other | lineage6.1.3 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817204 | Other | lineage4.9 | None | SRR7617847 | Other | La1.8.1 | None | ERR10796599 | Other | lineage4.8 | None | SRR10869086 | Pre-XDR-TB | lineage2.2.2 | None | ERR9786498 | Sensitive | lineage4.1.2.1 | None | SRR18149430 | Sensitive | lineage4.1.1.3 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR6785282 | Other | lineage4.3.3 | None | ERR4817434 | Other | lineage3 | None | ERR2446509 | Other | lineage3 | nl | ERR2503533 | Other | lineage4.1.2.1 | fi | ERR181887 | Other | lineage4.9 | None | SRR7516395 | MDR-TB | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR1063855 | Other | lineage4.9 | None | SRR6045002 | RR-TB | lineage4.9 | None | SRR5818436 | Sensitive | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR2660495 | Sensitive | lineage1.2.2.2 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR6046250 | Other | lineage4.9 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR5341460 | Other | lineage3 | None | ERR5087846 | Other | La1.8.1 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR11972394 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR6982141 | Other | lineage4.3.3 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR11465234 | Sensitive | lineage4.1.2.1;lineage4.3.4.2.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR6824519 | MDR-TB | lineage2.2.1 | cn | SRR11972188 | MDR-TB | lineage2.2.1 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR1175474 | Other | lineage4.9 | None | ERR11465982 | Sensitive | lineage4.3.4.2.1 | None | SRR1792025 | Other | La1.8.1 | None | ERR3324354 | Sensitive | lineage4.8 | None | ERR4820030 | Other | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR5818389 | Other | lineage4.9 | None | SRR1208731 | Sensitive | lineage4.9 | None | SRR1140716 | Other | lineage3 | None | ERR5979407 | Other | lineage3 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | DRR184982 | Other | lineage2.2.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR11465488 | Sensitive | lineage4.1.2.1 | None | SRR19576436 | Sensitive | lineage1.2.2.2 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4769546 | Other | La1.3 | None | SRR10869074 | Sensitive | lineage2.2.1.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR7236399 | Other | La1.8.1 | None | ERR867567 | RR-TB | lineage3 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR7236330 | Other | La1.8.1 | None | SRR8073606 | Other | La1.8.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR4821276 | Sensitive | lineage3 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR13423641 | Sensitive | lineage2.2.1 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR17406750 | Other | lineage1.1.2 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None |
|---|
