TB-Profiler result

Run: ERR4769505
Summary

Run ID: ERR4769505

Sample name:

Date: 01-04-2023 06:42:59

Number of reads: 25233

Percentage reads mapped: 1.61

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.99
lineage4.9 Euro-American (H37Rv-like) T1 None 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472122 n.277G>C non_coding_transcript_exon_variant 0.88 streptomycin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.98 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471896 n.51T>C non_coding_transcript_exon_variant 1.0
rrs 1471900 n.55C>T non_coding_transcript_exon_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472085 n.240C>G non_coding_transcript_exon_variant 1.0
rrs 1472086 n.241T>C non_coding_transcript_exon_variant 1.0
rrs 1472089 n.244C>T non_coding_transcript_exon_variant 1.0
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 1.0
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 1.0
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 1.0
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 1.0
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 1.0
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 1.0
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.29
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
rrs 1472203 n.358G>A non_coding_transcript_exon_variant 0.6
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.56
rrs 1472213 n.368G>C non_coding_transcript_exon_variant 0.56
rrs 1472215 n.370A>G non_coding_transcript_exon_variant 0.56
rrs 1472223 n.378C>G non_coding_transcript_exon_variant 0.8
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 1.0
rrs 1472228 n.383G>C non_coding_transcript_exon_variant 0.8
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 1.0
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 1.0
rrs 1472262 n.417C>T non_coding_transcript_exon_variant 1.0
rrs 1472269 n.424G>A non_coding_transcript_exon_variant 1.0
rrs 1472277 n.432C>G non_coding_transcript_exon_variant 1.0
rrs 1472338 n.493A>C non_coding_transcript_exon_variant 1.0
rrs 1472339 n.494C>A non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472378 n.533G>T non_coding_transcript_exon_variant 0.8
rrs 1472379 n.534T>G non_coding_transcript_exon_variant 1.0
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 1.0
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 1.0
rrs 1472505 n.660G>A non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 1.0
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 1.0
rrs 1472518 n.673G>A non_coding_transcript_exon_variant 1.0
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 1.0
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 1.0
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 1.0
rrs 1472544 n.699C>T non_coding_transcript_exon_variant 1.0
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 1.0
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 1.0
rrs 1472570 n.725G>A non_coding_transcript_exon_variant 1.0
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 1.0
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 1.0
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 1.0
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 1.0
rrs 1472591 n.746G>A non_coding_transcript_exon_variant 1.0
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 1.0
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 1.0
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 1.0
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.99
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.97
rrs 1472669 n.824_825insTAGA non_coding_transcript_exon_variant 1.0
rrs 1472678 n.833T>G non_coding_transcript_exon_variant 1.0
rrs 1472679 n.834T>C non_coding_transcript_exon_variant 1.0
rrs 1472682 n.839_843delGGGAT non_coding_transcript_exon_variant 1.0
rrs 1472689 n.844C>T non_coding_transcript_exon_variant 0.99
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 1.0
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.99
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 1.0
rrs 1472701 n.856T>A non_coding_transcript_exon_variant 0.99
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.99
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 1.0
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 1.0
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.97
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.92
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 1.0
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 1.0
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473053 n.1208T>A non_coding_transcript_exon_variant 1.0
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 1.0
rrs 1473062 n.1217T>A non_coding_transcript_exon_variant 1.0
rrs 1473068 n.1223A>G non_coding_transcript_exon_variant 1.0
rrs 1473080 n.1235C>A non_coding_transcript_exon_variant 1.0
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 1.0
rrs 1473352 n.1507C>T non_coding_transcript_exon_variant 1.0
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 1.0
rrl 1474228 n.571T>C non_coding_transcript_exon_variant 1.0
rrl 1474236 n.579G>A non_coding_transcript_exon_variant 0.67
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.67
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.67
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.67
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.67
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.67
rrl 1474844 n.1187G>T non_coding_transcript_exon_variant 0.86
rrl 1474866 n.1209C>A non_coding_transcript_exon_variant 0.88
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.86
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 1.0
rrl 1474902 n.1245T>C non_coding_transcript_exon_variant 1.0
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>A non_coding_transcript_exon_variant 1.0
rrl 1475144 n.1487G>C non_coding_transcript_exon_variant 0.67
rrl 1475151 n.1494C>T non_coding_transcript_exon_variant 0.67
rrl 1475154 n.1497C>A non_coding_transcript_exon_variant 0.67
rrl 1475156 n.1499G>A non_coding_transcript_exon_variant 0.67
rrl 1475163 n.1506T>G non_coding_transcript_exon_variant 0.67
rrl 1475175 n.1518G>A non_coding_transcript_exon_variant 0.67
rrl 1475672 n.2015C>G non_coding_transcript_exon_variant 1.0
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 1.0
rrl 1475687 n.2030C>T non_coding_transcript_exon_variant 1.0
rrl 1475688 n.2031G>C non_coding_transcript_exon_variant 1.0
rrl 1475696 n.2039T>C non_coding_transcript_exon_variant 1.0
rrl 1475703 n.2046A>G non_coding_transcript_exon_variant 1.0
rrl 1475707 n.2050T>A non_coding_transcript_exon_variant 1.0
rrl 1475713 n.2056C>G non_coding_transcript_exon_variant 1.0
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 1.0
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 0.83
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 0.83
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.89
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.89
rrl 1475858 n.2201T>C non_coding_transcript_exon_variant 1.0
rrl 1475866 n.2209T>A non_coding_transcript_exon_variant 1.0
rrl 1476126 n.2469C>T non_coding_transcript_exon_variant 1.0
rrl 1476128 n.2471T>A non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476135 n.2478T>C non_coding_transcript_exon_variant 0.95
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 0.98
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 0.98
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.94
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 0.94
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.94
rrl 1476195 n.2538C>A non_coding_transcript_exon_variant 0.98
rrl 1476196 n.2539C>A non_coding_transcript_exon_variant 0.98
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.98
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.94
rrl 1476204 n.2547C>A non_coding_transcript_exon_variant 0.98
rrl 1476210 n.2553G>T non_coding_transcript_exon_variant 0.98
rrl 1476211 n.2554G>T non_coding_transcript_exon_variant 0.94
rrl 1476212 n.2555T>C non_coding_transcript_exon_variant 0.98
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.98
rrl 1476215 n.2558C>A non_coding_transcript_exon_variant 0.98
rrl 1476225 n.2568T>G non_coding_transcript_exon_variant 0.99
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.99
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.99
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.99
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 1.0
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.96
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.96
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.96
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.99
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 1.0
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.96
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 1.0
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.99
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 1.0
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 1.0
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.98
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 1.0
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 1.0
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 1.0
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 1.0
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.97
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.99
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.99
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.97
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.95
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.99
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.98
rrl 1476514 n.2857C>T non_coding_transcript_exon_variant 1.0
rrl 1476517 n.2860C>T non_coding_transcript_exon_variant 0.82
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 1.0
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.82
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 1.0
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 1.0
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 1.0
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 1.0
rrl 1476537 n.2880A>G non_coding_transcript_exon_variant 1.0
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 1.0
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 1.0
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 1.0
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 1.0
rrl 1476573 n.2916A>C non_coding_transcript_exon_variant 1.0
rrl 1476577 n.2920T>G non_coding_transcript_exon_variant 0.88
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476595 n.2938C>T non_coding_transcript_exon_variant 1.0
katG 2155503 c.609C>T synonymous_variant 1.0
embA 4244220 c.988C>T synonymous_variant 1.0